Wall clock time and date at job start Tue Mar 31 2020 22:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39431 * 119.54571 * 2 1 4 4 C 1.35996 * 121.08762 * 180.02562 * 3 2 1 5 5 C 1.40821 * 119.73208 * 359.97438 * 4 3 2 6 6 N 1.33271 * 120.97939 * 180.25363 * 5 4 3 7 7 C 1.31875 * 121.29771 * 180.25820 * 6 5 4 8 8 C 1.48280 * 119.23847 * 179.75378 * 7 6 5 9 9 O 1.21502 * 120.00023 * 179.72816 * 8 7 6 10 10 N 1.34773 * 120.00292 * 359.73169 * 8 7 6 11 11 C 1.46503 * 120.00358 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.46913 * 34.99538 * 11 10 8 13 13 C 1.52997 * 109.47269 * 154.99590 * 11 10 8 14 14 N 1.46505 * 109.47212 * 304.99931 * 13 11 10 15 15 C 1.36936 * 119.99992 * 179.97438 * 14 13 11 16 16 H 1.08006 * 119.99834 * 0.02562 * 15 14 13 17 17 C 1.38801 * 120.00093 * 180.02562 * 15 14 13 18 18 N 1.31619 * 120.00176 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00265 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46951 * 89.99797 * 19 17 15 21 21 H 1.48500 * 109.47313 * 210.00112 * 19 17 15 22 22 H 1.48501 * 109.46991 * 330.00153 * 19 17 15 23 23 C 1.52997 * 109.46834 * 274.99972 * 11 10 8 24 24 C 1.53002 * 117.50022 * 128.74672 * 23 11 10 25 25 C 1.52997 * 117.50076 * 60.08477 * 23 11 10 26 26 C 1.40285 * 121.51891 * 359.47751 * 7 6 5 27 27 C 1.36500 * 119.81878 * 0.25837 * 26 7 6 28 28 C 1.40758 * 118.24332 * 359.97438 * 27 26 7 29 29 C 1.36136 * 119.54012 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.46912 * 89.99988 * 1 2 3 31 31 H 1.08995 * 109.47317 * 210.00383 * 1 2 3 32 32 H 1.09001 * 109.46732 * 330.00303 * 1 2 3 33 33 H 1.08003 * 119.45724 * 359.97438 * 3 2 1 34 34 H 1.07996 * 120.13482 * 179.97438 * 4 3 2 35 35 H 0.97007 * 119.99723 * 359.97438 * 10 8 7 36 36 H 1.09002 * 109.47153 * 184.99923 * 13 11 10 37 37 H 1.09001 * 109.46832 * 65.00114 * 13 11 10 38 38 H 0.96996 * 119.99606 * 0.02562 * 14 13 11 39 39 H 0.97001 * 120.00803 * 179.97438 * 18 17 15 40 40 H 1.09003 * 115.54905 * 274.41110 * 23 11 10 41 41 H 1.09000 * 117.49650 * 359.97438 * 24 23 11 42 42 H 1.09001 * 117.49817 * 145.01411 * 24 23 11 43 43 H 1.08996 * 117.49862 * 214.97497 * 25 23 11 44 44 H 1.08996 * 117.50355 * 359.97438 * 25 23 11 45 45 H 1.08001 * 120.08788 * 180.23480 * 26 7 6 46 46 H 1.07996 * 120.87777 * 179.97438 * 27 26 7 47 47 H 1.08004 * 120.17314 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.2130 0.0000 4 6 3.5540 1.2496 -0.0005 5 6 4.2851 0.0460 -0.0005 6 7 5.6178 0.0529 0.0040 7 6 6.3086 -1.0704 -0.0010 8 6 7.7902 -1.0095 -0.0012 9 8 8.4404 -2.0359 -0.0008 10 7 8.4156 0.1843 -0.0016 11 6 9.8794 0.2445 -0.0012 12 1 10.2772 -0.5820 -0.5900 13 6 10.3355 1.5713 -0.6115 14 7 9.7449 1.7248 -1.9435 15 6 10.0125 2.8436 -2.6863 16 1 10.6592 3.6128 -2.2904 17 6 9.4526 2.9893 -3.9480 18 7 8.6640 2.0523 -4.4302 19 14 9.8181 4.5153 -4.9616 20 1 11.0233 4.2781 -5.7961 21 1 8.6590 4.8154 -5.8400 22 1 10.0626 5.6653 -4.0544 23 6 10.3936 0.1407 1.4360 24 6 11.4736 -0.9034 1.7262 25 6 10.0424 -1.1239 2.2224 26 6 5.6742 -2.3216 -0.0005 27 6 4.3110 -2.3914 0.0000 28 6 3.5824 -1.1871 0.0005 29 6 2.1782 -1.1844 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6384 2.1388 -0.0004 34 1 4.0709 2.1978 -0.0009 35 1 7.8965 1.0038 -0.0023 36 1 11.4224 1.5793 -0.6929 37 1 10.0128 2.3944 0.0261 38 1 9.1638 1.0342 -2.2988 39 1 8.2724 2.1542 -5.3118 40 1 10.4403 1.0797 1.9876 41 1 11.8175 -1.5167 0.8933 42 1 12.2306 -0.6515 2.4690 43 1 9.8584 -1.0169 3.2913 44 1 9.4446 -1.8817 1.7160 45 1 6.2628 -3.2271 -0.0009 46 1 3.8049 -3.3455 0.0000 47 1 1.6335 -2.1170 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699581500.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:53 Heat of formation + Delta-G solvation = 53.996588 kcal Electronic energy + Delta-G solvation = -28674.341008 eV Core-core repulsion = 24822.914705 eV Total energy + Delta-G solvation = -3851.426304 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.07583 -39.65819 -37.71675 -36.81743 -34.97982 -33.82563 -33.25010 -32.25234 -30.98695 -30.37155 -28.37302 -27.22991 -24.49084 -24.02778 -23.36506 -22.21260 -22.09541 -21.46260 -20.84733 -19.94363 -18.17365 -17.88115 -17.01779 -16.92014 -15.99286 -15.53176 -15.34327 -14.93888 -14.65950 -14.49807 -14.41837 -14.22764 -13.95855 -13.79002 -13.28706 -13.23993 -13.19696 -13.09606 -12.81343 -12.58676 -12.07393 -11.70343 -11.67353 -11.57723 -11.42089 -11.13321 -11.00151 -10.86367 -10.78982 -10.69469 -10.21547 -10.15379 -9.96858 -9.87802 -9.65476 -9.41964 -8.87897 -8.82607 -8.58659 -8.31949 -6.91938 -5.73573 -3.03534 0.12974 0.59174 1.84084 2.41239 3.28402 3.31340 3.45138 3.49926 3.51740 3.98284 4.09781 4.20475 4.40028 4.54211 4.58834 4.59785 4.81150 4.86210 4.92863 4.98160 5.12637 5.20601 5.28506 5.29183 5.31824 5.34259 5.48405 5.58706 5.60552 5.64055 5.79495 5.84038 5.88246 5.89285 5.94480 5.96119 6.12107 6.15487 6.27618 6.30941 6.37354 6.39831 6.52014 6.55116 6.67655 6.71104 6.96345 7.61657 7.71517 7.96893 8.43475 8.49923 9.55431 10.11454 10.46864 11.48628 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007829 B = 0.003733 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3575.428985 B = 7498.473891 C =10251.949507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.076 4.076 3 C -0.107 4.107 4 C -0.074 4.074 5 C 0.121 3.879 6 N -0.432 5.432 7 C 0.121 3.879 8 C 0.571 3.429 9 O -0.539 6.539 10 N -0.682 5.682 11 C 0.166 3.834 12 H 0.090 0.910 13 C 0.148 3.852 14 N -0.731 5.731 15 C -0.241 4.241 16 H 0.071 0.929 17 C -0.011 4.011 18 N -0.930 5.930 19 Si 0.907 3.093 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.163 4.163 24 C -0.170 4.170 25 C -0.186 4.186 26 C -0.122 4.122 27 C -0.069 4.069 28 C -0.083 4.083 29 C -0.108 4.108 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.131 0.869 34 H 0.141 0.859 35 H 0.415 0.585 36 H 0.037 0.963 37 H 0.026 0.974 38 H 0.386 0.614 39 H 0.255 0.745 40 H 0.104 0.896 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.116 0.884 45 H 0.150 0.850 46 H 0.143 0.857 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.801 -7.765 14.132 21.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.076 4.076 3 C -0.127 4.127 4 C -0.093 4.093 5 C -0.002 4.002 6 N -0.143 5.143 7 C -0.033 4.033 8 C 0.356 3.644 9 O -0.417 6.417 10 N -0.331 5.331 11 C 0.061 3.939 12 H 0.108 0.892 13 C 0.020 3.980 14 N -0.376 5.376 15 C -0.372 4.372 16 H 0.089 0.911 17 C -0.208 4.208 18 N -0.578 5.578 19 Si 0.738 3.262 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.182 4.182 24 C -0.207 4.207 25 C -0.223 4.223 26 C -0.142 4.142 27 C -0.095 4.095 28 C -0.085 4.085 29 C -0.126 4.126 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.149 0.851 34 H 0.159 0.841 35 H 0.252 0.748 36 H 0.054 0.946 37 H 0.043 0.957 38 H 0.220 0.780 39 H 0.064 0.936 40 H 0.122 0.878 41 H 0.113 0.887 42 H 0.108 0.892 43 H 0.101 0.899 44 H 0.134 0.866 45 H 0.168 0.832 46 H 0.161 0.839 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.872 -7.434 14.070 20.467 hybrid contribution -0.639 0.304 -0.836 1.095 sum -13.511 -7.130 13.235 20.212 Atomic orbital electron populations 1.20853 0.90800 1.02983 1.02656 1.19747 0.96474 0.93034 0.98359 1.20813 0.93971 0.97829 1.00076 1.20947 0.93557 0.97198 0.97598 1.18849 0.88933 0.92933 0.99506 1.67864 1.07408 1.29831 1.09232 1.21405 0.94580 0.89444 0.97874 1.17824 0.85519 0.84310 0.76792 1.90680 1.65744 1.34149 1.51101 1.45834 1.07544 1.08566 1.71180 1.20895 0.78913 1.00727 0.93316 0.89219 1.20918 0.96834 0.92157 0.88055 1.42342 1.57883 1.23748 1.13619 1.19198 1.24031 0.97053 0.96952 0.91131 1.24740 1.00035 0.98286 0.97699 1.69676 1.35892 1.33901 1.18329 0.86199 0.77187 0.82614 0.80220 1.21751 1.21840 1.20753 1.22647 1.04201 0.94344 0.97043 1.22899 0.91913 1.02547 1.03384 1.23257 0.98995 1.00671 0.99342 1.21746 0.95062 0.98914 0.98516 1.21399 0.93704 0.97678 0.96716 1.18937 0.94788 0.94022 1.00776 1.20799 0.92122 0.98222 1.01501 0.90802 0.91395 0.91253 0.85143 0.84092 0.74804 0.94557 0.95675 0.77990 0.93558 0.87793 0.88684 0.89195 0.89892 0.86559 0.83236 0.83882 0.85237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 9.98 36.01 0.36 -0.35 16 2 C -0.08 -0.70 5.85 -104.93 -0.61 -1.31 16 3 C -0.11 -1.07 9.58 -39.94 -0.38 -1.46 16 4 C -0.07 -0.94 9.99 -39.41 -0.39 -1.33 16 5 C 0.12 1.77 6.61 -84.85 -0.56 1.21 16 6 N -0.43 -7.13 9.47 -7.54 -0.07 -7.20 16 7 C 0.12 1.97 6.75 -82.95 -0.56 1.41 16 8 C 0.57 10.17 7.15 -12.13 -0.09 10.08 16 9 O -0.54 -10.19 13.31 5.36 0.07 -10.12 16 10 N -0.68 -12.15 4.48 -54.61 -0.24 -12.40 16 11 C 0.17 2.94 2.43 -67.93 -0.17 2.77 16 12 H 0.09 1.76 7.33 -51.93 -0.38 1.37 16 13 C 0.15 3.00 5.80 -4.04 -0.02 2.97 16 14 N -0.73 -18.64 5.43 -59.91 -0.33 -18.96 16 15 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 16 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 17 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 18 N -0.93 -28.56 13.06 55.49 0.72 -27.83 16 19 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 C -0.16 -2.41 5.36 -90.62 -0.49 -2.89 16 24 C -0.17 -2.28 10.18 -26.69 -0.27 -2.55 16 25 C -0.19 -2.64 9.74 -26.69 -0.26 -2.90 16 26 C -0.12 -1.65 9.54 -39.44 -0.38 -2.02 16 27 C -0.07 -0.78 9.88 -39.26 -0.39 -1.17 16 28 C -0.08 -1.03 5.75 -106.71 -0.61 -1.65 16 29 C -0.11 -1.06 9.37 -39.52 -0.37 -1.43 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.34 8.07 -51.93 -0.42 -0.08 16 32 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 33 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 34 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 35 H 0.42 7.59 7.91 -40.82 -0.32 7.26 16 36 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.39 10.59 7.33 -40.82 -0.30 10.29 16 39 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 40 H 0.10 1.44 8.11 -51.93 -0.42 1.02 16 41 H 0.09 1.32 8.05 -51.93 -0.42 0.91 16 42 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.12 1.88 5.02 -51.93 -0.26 1.62 16 45 H 0.15 1.84 7.60 -52.49 -0.40 1.44 16 46 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 47 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 LS Contribution 392.65 15.07 5.92 5.92 Total: -1.00 -32.90 392.65 -11.08 -43.98 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: -6.69 Total: 17.00 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -5.44 Total: -7.96 kcal Atomic # 7 Polarization: -66.47 SS G_CDS: 0.08 Total: -66.39 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.07 Total: -10.12 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.90 -11.08 -43.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699581500.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.980 kcal (2) G-P(sol) polarization free energy of solvation -32.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds