Wall clock time and date at job start Tue Mar 31 2020 22:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39439 * 119.54313 * 2 1 4 4 C 1.35984 * 121.08421 * 180.02562 * 3 2 1 5 5 C 1.40826 * 119.73661 * 359.97438 * 4 3 2 6 6 N 1.33277 * 120.97918 * 180.25247 * 5 4 3 7 7 C 1.31873 * 121.29864 * 180.25896 * 6 5 4 8 8 C 1.48277 * 119.24388 * 179.75551 * 7 6 5 9 9 O 1.21503 * 120.00109 * 179.72873 * 8 7 6 10 10 N 1.34777 * 119.99570 * 359.72582 * 8 7 6 11 11 C 1.46499 * 119.99665 * 179.72350 * 10 8 7 12 12 H 1.08999 * 109.47228 * 325.27715 * 11 10 8 13 13 C 1.53001 * 109.47193 * 205.27836 * 11 10 8 14 14 N 1.46508 * 109.47024 * 55.00011 * 13 11 10 15 15 C 1.36933 * 119.99920 * 179.97438 * 14 13 11 16 16 H 1.08010 * 119.99913 * 0.02562 * 15 14 13 17 17 C 1.38810 * 120.00299 * 179.97438 * 15 14 13 18 18 N 1.31617 * 120.00370 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 119.99502 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.46972 * 89.99804 * 19 17 15 21 21 H 1.48501 * 109.46876 * 209.99847 * 19 17 15 22 22 H 1.48497 * 109.47005 * 329.99758 * 19 17 15 23 23 C 1.52999 * 109.47341 * 85.27876 * 11 10 8 24 24 C 1.53000 * 117.49472 * 8.74506 * 23 11 10 25 25 C 1.53003 * 117.49581 * 300.08841 * 23 11 10 26 26 C 1.40284 * 121.51690 * 359.47889 * 7 6 5 27 27 C 1.36510 * 119.81727 * 0.25496 * 26 7 6 28 28 C 1.40754 * 118.24619 * 0.02562 * 27 26 7 29 29 C 1.36140 * 119.54098 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47200 * 90.00109 * 1 2 3 31 31 H 1.09006 * 109.47295 * 210.00068 * 1 2 3 32 32 H 1.08998 * 109.47456 * 330.00136 * 1 2 3 33 33 H 1.07997 * 119.45681 * 359.97438 * 3 2 1 34 34 H 1.08003 * 120.13776 * 179.97438 * 4 3 2 35 35 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 36 36 H 1.09000 * 109.46944 * 174.99908 * 13 11 10 37 37 H 1.08997 * 109.47436 * 295.00057 * 13 11 10 38 38 H 0.96994 * 120.00145 * 0.02562 * 14 13 11 39 39 H 0.96996 * 120.00293 * 180.02562 * 18 17 15 40 40 H 1.08999 * 115.55354 * 154.41821 * 23 11 10 41 41 H 1.08995 * 117.49983 * 0.02562 * 24 23 11 42 42 H 1.09001 * 117.49622 * 145.02295 * 24 23 11 43 43 H 1.09002 * 117.49284 * 214.97689 * 25 23 11 44 44 H 1.08990 * 117.49881 * 359.97438 * 25 23 11 45 45 H 1.07992 * 120.08844 * 180.23442 * 26 7 6 46 46 H 1.08002 * 120.87649 * 179.97438 * 27 26 7 47 47 H 1.07996 * 120.17300 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1945 1.2131 0.0000 4 6 3.5538 1.2497 -0.0005 5 6 4.2850 0.0461 -0.0005 6 7 5.6177 0.0530 0.0040 7 6 6.3087 -1.0702 -0.0011 8 6 7.7902 -1.0093 -0.0012 9 8 8.4405 -2.0357 -0.0008 10 7 8.4155 0.1847 -0.0018 11 6 9.8792 0.2449 0.0042 12 1 10.2745 -0.5825 0.5935 13 6 10.3326 1.5708 0.6186 14 7 9.7363 1.7221 1.9482 15 6 10.0014 2.8393 2.6943 16 1 10.6499 3.6091 2.3024 17 6 9.4360 2.9830 3.9539 18 7 9.6905 4.0571 4.6708 19 14 8.3140 1.6520 4.6313 20 1 9.1226 0.6570 5.3805 21 1 7.3139 2.2642 5.5425 22 1 7.6135 0.9768 3.5094 23 6 10.3998 0.1434 -1.4309 24 6 9.3715 0.2120 -2.5618 25 6 10.0485 -1.1182 -2.2221 26 6 5.6743 -2.3214 -0.0006 27 6 4.3110 -2.3913 0.0000 28 6 3.5823 -1.1870 -0.0005 29 6 2.1782 -1.1844 0.0005 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5138 33 1 1.6383 2.1388 -0.0004 34 1 4.0708 2.1979 -0.0009 35 1 7.8964 1.0041 -0.0017 36 1 11.4192 1.5785 0.7047 37 1 10.0128 2.3949 -0.0190 38 1 9.1543 1.0307 2.3003 39 1 9.2957 4.1573 5.5511 40 1 11.3758 0.5944 -1.6100 41 1 8.3243 0.3299 -2.2833 42 1 9.6712 0.7078 -3.4850 43 1 10.7934 -1.4969 -2.9221 44 1 9.4471 -1.8759 -1.7201 45 1 6.2629 -3.2268 -0.0010 46 1 3.8049 -3.3454 0.0000 47 1 1.6335 -2.1170 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699581501.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:56 Heat of formation + Delta-G solvation = 61.890622 kcal Electronic energy + Delta-G solvation = -29047.377564 eV Core-core repulsion = 25196.293572 eV Total energy + Delta-G solvation = -3851.083993 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.24025 -39.97000 -37.85874 -36.92512 -35.05475 -33.95602 -33.29223 -32.35370 -31.27959 -30.50090 -28.84314 -27.47632 -24.62346 -24.07212 -23.47922 -22.32623 -22.23693 -21.31367 -21.07463 -19.73205 -18.38639 -18.07800 -17.49834 -17.03030 -16.16052 -15.82887 -15.63342 -14.95035 -14.75631 -14.61772 -14.44202 -14.28852 -14.07162 -13.79772 -13.57792 -13.40262 -13.32786 -13.15266 -12.75767 -12.67531 -12.19975 -11.85631 -11.81511 -11.71609 -11.54229 -11.50657 -11.27255 -11.02114 -10.85618 -10.82819 -10.38386 -10.16978 -10.09006 -9.70513 -9.60719 -9.56974 -8.96896 -8.91909 -8.77215 -8.44942 -7.24677 -5.76887 -3.12566 -0.01224 0.45673 1.70573 2.26341 3.11536 3.17298 3.39291 3.44112 3.46650 3.88871 3.94072 4.02118 4.27323 4.43376 4.46424 4.60190 4.65634 4.73562 4.80443 4.86303 5.00854 5.12975 5.15861 5.17277 5.19318 5.23683 5.42767 5.50152 5.52222 5.52594 5.61065 5.70578 5.77219 5.81520 5.83431 5.86010 5.89928 6.03187 6.08688 6.19701 6.24628 6.26219 6.40466 6.45250 6.55110 6.60458 6.79960 7.44444 7.76915 7.98358 8.29114 8.41825 9.20587 9.93147 10.12316 11.41337 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008549 B = 0.004098 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3274.588252 B = 6830.789801 C = 8954.135276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.074 4.074 3 C -0.105 4.105 4 C -0.076 4.076 5 C 0.120 3.880 6 N -0.434 5.434 7 C 0.116 3.884 8 C 0.568 3.432 9 O -0.533 6.533 10 N -0.689 5.689 11 C 0.161 3.839 12 H 0.094 0.906 13 C 0.153 3.847 14 N -0.755 5.755 15 C -0.244 4.244 16 H 0.092 0.908 17 C 0.008 3.992 18 N -0.933 5.933 19 Si 0.880 3.120 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.277 1.277 23 C -0.159 4.159 24 C -0.177 4.177 25 C -0.187 4.187 26 C -0.122 4.122 27 C -0.067 4.067 28 C -0.082 4.082 29 C -0.108 4.108 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.132 0.868 34 H 0.142 0.858 35 H 0.416 0.584 36 H 0.045 0.955 37 H 0.036 0.964 38 H 0.362 0.638 39 H 0.259 0.741 40 H 0.113 0.887 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.114 0.886 45 H 0.151 0.849 46 H 0.145 0.855 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.589 -11.984 -15.107 25.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.074 4.074 3 C -0.125 4.125 4 C -0.095 4.095 5 C -0.004 4.004 6 N -0.146 5.146 7 C -0.038 4.038 8 C 0.352 3.648 9 O -0.410 6.410 10 N -0.339 5.339 11 C 0.057 3.943 12 H 0.112 0.888 13 C 0.025 3.975 14 N -0.401 5.401 15 C -0.373 4.373 16 H 0.109 0.891 17 C -0.187 4.187 18 N -0.581 5.581 19 Si 0.710 3.290 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.204 1.204 23 C -0.179 4.179 24 C -0.215 4.215 25 C -0.223 4.223 26 C -0.143 4.143 27 C -0.093 4.093 28 C -0.084 4.084 29 C -0.127 4.127 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.150 0.850 34 H 0.160 0.840 35 H 0.254 0.746 36 H 0.063 0.937 37 H 0.054 0.946 38 H 0.196 0.804 39 H 0.069 0.931 40 H 0.131 0.869 41 H 0.110 0.890 42 H 0.107 0.893 43 H 0.104 0.896 44 H 0.132 0.868 45 H 0.168 0.832 46 H 0.162 0.838 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -15.616 -11.597 -15.018 24.575 hybrid contribution -1.438 -1.189 0.677 1.985 sum -17.054 -12.786 -14.341 25.691 Atomic orbital electron populations 1.20863 0.90684 1.03203 1.02620 1.19774 0.96571 0.92997 0.98045 1.20841 0.93959 0.97919 0.99774 1.20960 0.93610 0.97178 0.97714 1.18855 0.88848 0.93012 0.99644 1.67852 1.07542 1.29824 1.09350 1.21400 0.94505 0.89572 0.98352 1.17898 0.85640 0.84334 0.76934 1.90702 1.65712 1.34019 1.50527 1.45945 1.07819 1.08648 1.71530 1.20925 0.78579 1.00655 0.94162 0.88820 1.20898 0.97080 0.92542 0.86959 1.42694 1.58212 1.23566 1.15617 1.19034 1.24756 0.96646 0.96896 0.89050 1.24621 1.00128 0.97109 0.96880 1.69692 1.48391 1.27659 1.12317 0.86613 0.81246 0.82218 0.78892 1.21088 1.21740 1.20355 1.22656 1.00033 1.02976 0.92213 1.22909 0.98390 1.01322 0.98831 1.23325 1.03843 0.92031 1.03134 1.21744 0.95109 0.98852 0.98600 1.21423 0.93674 0.97754 0.96486 1.18942 0.94841 0.93972 1.00650 1.20814 0.92074 0.98308 1.01487 0.90794 0.91302 0.91120 0.84992 0.84003 0.74648 0.93726 0.94640 0.80447 0.93063 0.86882 0.89026 0.89339 0.89572 0.86760 0.83177 0.83763 0.85137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.65 9.98 36.00 0.36 -0.29 16 2 C -0.07 -0.63 5.85 -104.93 -0.61 -1.24 16 3 C -0.11 -0.98 9.58 -39.94 -0.38 -1.36 16 4 C -0.08 -0.90 9.99 -39.41 -0.39 -1.29 16 5 C 0.12 1.64 6.61 -84.85 -0.56 1.08 16 6 N -0.43 -6.71 9.47 -7.54 -0.07 -6.79 16 7 C 0.12 1.76 6.75 -82.95 -0.56 1.20 16 8 C 0.57 9.41 6.67 -12.13 -0.08 9.33 16 9 O -0.53 -9.45 13.32 5.36 0.07 -9.38 16 10 N -0.69 -11.38 3.03 -54.61 -0.17 -11.55 16 11 C 0.16 2.66 2.59 -67.93 -0.18 2.48 16 12 H 0.09 1.68 7.57 -51.93 -0.39 1.28 16 13 C 0.15 2.91 5.80 -4.04 -0.02 2.89 16 14 N -0.75 -18.02 5.24 -59.90 -0.31 -18.34 16 15 C -0.24 -6.91 10.47 -15.06 -0.16 -7.07 16 16 H 0.09 2.75 8.06 -52.48 -0.42 2.32 16 17 C 0.01 0.25 5.50 -17.43 -0.10 0.16 16 18 N -0.93 -29.52 13.97 55.49 0.78 -28.74 16 19 Si 0.88 22.94 27.74 -169.99 -4.71 18.23 16 20 H -0.28 -7.42 7.11 56.52 0.40 -7.02 16 21 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 22 H -0.28 -7.00 6.52 56.52 0.37 -6.63 16 23 C -0.16 -2.21 5.71 -90.62 -0.52 -2.73 16 24 C -0.18 -2.31 9.74 -26.69 -0.26 -2.57 16 25 C -0.19 -2.51 9.83 -26.69 -0.26 -2.77 16 26 C -0.12 -1.54 9.54 -39.44 -0.38 -1.91 16 27 C -0.07 -0.70 9.88 -39.26 -0.39 -1.09 16 28 C -0.08 -0.95 5.75 -106.72 -0.61 -1.56 16 29 C -0.11 -0.98 9.37 -39.52 -0.37 -1.35 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.32 8.07 -51.93 -0.42 -0.10 16 32 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 33 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.14 1.59 8.06 -52.48 -0.42 1.17 16 35 H 0.42 7.04 7.91 -40.82 -0.32 6.72 16 36 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.36 8.77 5.20 -40.82 -0.21 8.55 16 39 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 40 H 0.11 1.43 8.11 -51.93 -0.42 1.01 16 41 H 0.09 1.28 6.68 -51.93 -0.35 0.93 16 42 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.11 1.76 5.03 -51.93 -0.26 1.50 16 45 H 0.15 1.71 7.60 -52.49 -0.40 1.31 16 46 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 47 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 386.66 15.07 5.83 5.83 Total: -1.00 -33.72 386.66 -10.66 -44.38 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: -6.59 Total: 14.46 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -5.47 Total: -8.10 kcal Atomic # 7 Polarization: -65.64 SS G_CDS: 0.22 Total: -65.41 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.07 Total: -9.38 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.71 Total: 18.23 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.72 -10.66 -44.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699581501.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.266 kcal (2) G-P(sol) polarization free energy of solvation -33.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds