Wall clock time and date at job start Tue Mar 31 2020 22:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39312 * 119.05538 * 2 1 4 4 C 1.38864 * 119.57406 * 179.74938 * 3 2 1 5 5 C 1.47903 * 121.10745 * 180.27525 * 4 3 2 6 6 O 1.21543 * 119.99421 * 174.14578 * 5 4 3 7 7 N 1.34771 * 120.00268 * 354.14121 * 5 4 3 8 8 C 1.46507 * 119.99952 * 179.97438 * 7 5 4 9 9 H 1.08999 * 109.46997 * 325.00550 * 8 7 5 10 10 C 1.52998 * 109.47158 * 205.00516 * 8 7 5 11 11 N 1.46500 * 109.47152 * 55.00318 * 10 8 7 12 12 C 1.36943 * 119.99722 * 180.02562 * 11 10 8 13 13 H 1.07994 * 120.00261 * 0.02562 * 12 11 10 14 14 C 1.38812 * 119.99354 * 179.97438 * 12 11 10 15 15 N 1.31613 * 120.00571 * 0.02562 * 14 12 11 16 16 Si 1.86810 * 119.99559 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46933 * 90.00257 * 16 14 12 18 18 H 1.48494 * 109.46839 * 210.00335 * 16 14 12 19 19 H 1.48498 * 109.46857 * 330.00313 * 16 14 12 20 20 C 1.52999 * 109.46708 * 85.00748 * 8 7 5 21 21 C 1.53000 * 117.50195 * 8.74362 * 20 8 7 22 22 C 1.53002 * 117.49732 * 300.08321 * 20 8 7 23 23 C 1.41816 * 117.77419 * 0.25389 * 4 3 2 24 24 C 1.40106 * 121.36598 * 179.97438 * 23 4 3 25 25 C 1.36246 * 119.64507 * 179.97438 * 24 23 4 26 26 C 1.39351 * 120.83391 * 0.08172 * 25 24 23 27 27 C 1.36062 * 121.04975 * 359.93463 * 26 25 24 28 28 C 1.40708 * 119.74255 * 0.02562 * 27 26 25 29 29 N 1.30963 * 119.05674 * 180.29783 * 2 1 3 30 30 H 1.09005 * 109.47670 * 90.00115 * 1 2 3 31 31 H 1.09006 * 109.47002 * 210.00085 * 1 2 3 32 32 H 1.09008 * 109.47256 * 329.99765 * 1 2 3 33 33 H 1.07998 * 120.21626 * 0.02562 * 3 2 1 34 34 H 0.97003 * 120.00265 * 0.02562 * 7 5 4 35 35 H 1.08999 * 109.47474 * 175.00314 * 10 8 7 36 36 H 1.09004 * 109.46841 * 295.00020 * 10 8 7 37 37 H 0.97001 * 120.00067 * 359.97438 * 11 10 8 38 38 H 0.97005 * 120.00185 * 180.02562 * 15 14 12 39 39 H 1.08998 * 115.55125 * 154.41772 * 20 8 7 40 40 H 1.08995 * 117.49707 * 0.02562 * 21 20 8 41 41 H 1.09000 * 117.49589 * 145.02065 * 21 20 8 42 42 H 1.08997 * 117.50100 * 214.98256 * 22 20 8 43 43 H 1.08997 * 117.49920 * 0.02562 * 22 20 8 44 44 H 1.08000 * 120.17334 * 0.02562 * 24 23 4 45 45 H 1.08001 * 119.58456 * 180.02562 * 25 24 23 46 46 H 1.07998 * 119.47624 * 179.97438 * 26 25 24 47 47 H 1.08000 * 120.13124 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1836 1.2178 0.0000 4 6 3.5722 1.2304 0.0053 5 6 4.3248 2.5036 0.0115 6 8 5.5350 2.4935 0.1235 7 7 3.6687 3.6748 -0.1069 8 6 4.4142 4.9360 -0.1002 9 1 5.2654 4.8512 0.5754 10 6 3.4987 6.0671 0.3724 11 7 2.9264 5.7199 1.6755 12 6 2.0696 6.5868 2.2998 13 1 1.8155 7.5261 1.8314 14 6 1.5269 6.2576 3.5343 15 7 1.8361 5.1126 4.1050 16 14 0.3586 7.4404 4.3864 17 1 -1.0361 7.1429 3.9722 18 1 0.4821 7.2840 5.8579 19 1 0.7013 8.8344 4.0062 20 6 4.9134 5.2409 -1.5140 21 6 4.4004 4.3546 -2.6508 22 6 5.8471 4.2208 -2.1687 23 6 4.2444 -0.0184 0.0049 24 6 5.6434 -0.0935 0.0095 25 6 6.2529 -1.3120 0.0096 26 6 5.5022 -2.4861 0.0034 27 6 4.1421 -2.4494 -0.0015 28 6 3.4772 -1.2093 -0.0009 29 7 2.1431 -1.1448 -0.0060 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5139 33 1 1.6318 2.1461 0.0004 34 1 2.7028 3.6829 -0.1960 35 1 4.0753 6.9877 0.4625 36 1 2.6957 6.2106 -0.3506 37 1 3.1537 4.8758 2.0957 38 1 1.4565 4.8824 4.9675 39 1 5.0845 6.2943 -1.7351 40 1 3.7069 3.5547 -2.3915 41 1 4.2343 4.8251 -3.6199 42 1 6.6322 4.6032 -2.8210 43 1 6.1053 3.3324 -1.5925 44 1 6.2355 0.8098 0.0138 45 1 7.3314 -1.3688 0.0135 46 1 6.0081 -3.4402 0.0032 47 1 3.5750 -3.3685 -0.0058 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699598869.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:26 Heat of formation + Delta-G solvation = 65.100375 kcal Electronic energy + Delta-G solvation = -29462.482775 eV Core-core repulsion = 25611.537968 eV Total energy + Delta-G solvation = -3850.944807 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.21959 -39.78969 -37.42913 -37.23209 -34.99151 -33.73271 -33.18199 -32.05240 -31.31286 -30.00883 -28.25855 -27.74732 -24.74810 -24.09815 -23.09499 -22.49633 -22.30654 -21.54708 -20.60781 -19.84629 -18.07556 -17.59885 -17.39019 -17.04900 -16.10374 -15.83064 -15.37186 -14.94886 -14.86047 -14.74993 -14.44657 -14.24098 -13.64094 -13.56141 -13.36257 -13.23285 -13.08480 -13.06337 -12.90709 -12.31436 -12.16900 -11.74017 -11.65499 -11.46675 -11.42495 -11.36266 -11.28244 -10.95079 -10.87252 -10.46393 -10.34111 -10.20943 -10.07011 -9.85817 -9.64434 -9.22797 -8.98308 -8.83732 -8.73393 -8.25826 -7.03302 -5.83714 -3.14361 0.07839 0.74548 1.70298 2.72903 3.13123 3.18504 3.38510 3.44354 3.46142 3.98567 4.04938 4.09855 4.43092 4.50475 4.60045 4.69000 4.79554 4.85446 5.03128 5.10257 5.13183 5.13839 5.25143 5.34227 5.44421 5.47382 5.49161 5.51338 5.63130 5.72192 5.73753 5.79009 5.86713 5.92128 5.93438 6.03702 6.08309 6.15687 6.24657 6.28051 6.37054 6.42830 6.46974 6.53324 6.62263 6.78218 6.86354 7.61576 7.62955 7.83147 8.27495 8.33545 9.45610 9.99964 10.35264 11.38262 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009948 B = 0.003750 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2813.823095 B = 7465.321541 C = 8982.408138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.157 3.843 3 C -0.129 4.129 4 C -0.064 4.064 5 C 0.564 3.436 6 O -0.528 6.528 7 N -0.695 5.695 8 C 0.167 3.833 9 H 0.095 0.905 10 C 0.147 3.853 11 N -0.732 5.732 12 C -0.245 4.245 13 H 0.071 0.929 14 C -0.009 4.009 15 N -0.930 5.930 16 Si 0.907 3.093 17 H -0.289 1.289 18 H -0.291 1.291 19 H -0.282 1.282 20 C -0.160 4.160 21 C -0.178 4.178 22 C -0.186 4.186 23 C -0.070 4.070 24 C -0.095 4.095 25 C -0.126 4.126 26 C -0.099 4.099 27 C -0.102 4.102 28 C 0.129 3.871 29 N -0.464 5.464 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.146 0.854 34 H 0.406 0.594 35 H 0.036 0.964 36 H 0.027 0.973 37 H 0.385 0.615 38 H 0.256 0.744 39 H 0.112 0.888 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.115 0.885 44 H 0.169 0.831 45 H 0.126 0.874 46 H 0.127 0.873 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.054 -11.791 -13.456 18.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.005 3.995 3 C -0.150 4.150 4 C -0.075 4.075 5 C 0.351 3.649 6 O -0.407 6.407 7 N -0.345 5.345 8 C 0.063 3.937 9 H 0.113 0.887 10 C 0.019 3.981 11 N -0.377 5.377 12 C -0.376 4.376 13 H 0.089 0.911 14 C -0.206 4.206 15 N -0.578 5.578 16 Si 0.738 3.262 17 H -0.217 1.217 18 H -0.218 1.218 19 H -0.207 1.207 20 C -0.180 4.180 21 C -0.215 4.215 22 C -0.223 4.223 23 C -0.073 4.073 24 C -0.113 4.113 25 C -0.144 4.144 26 C -0.119 4.119 27 C -0.121 4.121 28 C 0.007 3.993 29 N -0.174 5.174 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.163 0.837 34 H 0.242 0.758 35 H 0.054 0.946 36 H 0.045 0.955 37 H 0.220 0.780 38 H 0.066 0.934 39 H 0.130 0.870 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.133 0.867 44 H 0.186 0.814 45 H 0.144 0.856 46 H 0.145 0.855 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.424 -12.440 -13.325 18.759 hybrid contribution -0.671 1.190 0.713 1.541 sum 3.753 -11.250 -12.612 17.312 Atomic orbital electron populations 1.20826 0.88047 1.04286 1.03371 1.21408 0.97353 0.87573 0.93214 1.22356 0.93661 1.00107 0.98827 1.20377 0.93678 0.93464 1.00018 1.17960 0.87075 0.83358 0.76526 1.90506 1.13580 1.86509 1.50149 1.45913 1.11369 1.05286 1.71980 1.20850 0.95597 0.82837 0.94406 0.88722 1.20924 0.94228 0.93864 0.89040 1.42354 1.54779 1.22651 1.17936 1.19195 1.18801 0.99229 1.00351 0.91091 1.24744 1.00835 0.97349 0.97665 1.69662 1.47759 1.22477 1.17873 0.86202 0.80831 0.80285 0.78910 1.21673 1.21763 1.20736 1.22692 1.04669 0.97152 0.93447 1.22890 0.97806 1.02959 0.97871 1.23335 0.92630 1.02700 1.03629 1.18649 0.95132 0.92026 1.01492 1.22073 0.93445 1.00447 0.95330 1.21058 1.00394 0.92308 1.00657 1.20949 0.93731 0.98775 0.98397 1.20726 0.94191 0.95980 1.01193 1.18831 0.88819 0.92951 0.98699 1.67626 1.08795 1.28864 1.12145 0.90035 0.90147 0.89815 0.83665 0.75784 0.94583 0.95493 0.78042 0.93424 0.87049 0.89202 0.89380 0.89610 0.86656 0.81376 0.85561 0.85486 0.84833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.14 36.01 0.37 -0.71 16 2 C 0.16 2.09 6.78 -82.56 -0.56 1.53 16 3 C -0.13 -1.76 9.21 -38.95 -0.36 -2.12 16 4 C -0.06 -0.98 5.94 -104.34 -0.62 -1.60 16 5 C 0.56 9.00 6.59 -12.31 -0.08 8.92 16 6 O -0.53 -9.17 10.55 5.33 0.06 -9.11 16 7 N -0.70 -10.56 3.01 -54.73 -0.16 -10.73 16 8 C 0.17 2.66 2.59 -67.93 -0.18 2.49 16 9 H 0.09 1.71 7.58 -51.93 -0.39 1.31 16 10 C 0.15 2.72 5.80 -4.04 -0.02 2.69 16 11 N -0.73 -17.36 5.43 -59.91 -0.33 -17.68 16 12 C -0.24 -6.52 9.99 -15.06 -0.15 -6.67 16 13 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 14 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 15 N -0.93 -27.30 13.06 55.49 0.72 -26.58 16 16 Si 0.91 21.75 29.55 -169.99 -5.02 16.72 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 20 C -0.16 -2.14 5.70 -90.62 -0.52 -2.66 16 21 C -0.18 -2.19 9.74 -26.69 -0.26 -2.45 16 22 C -0.19 -2.44 9.83 -26.69 -0.26 -2.70 16 23 C -0.07 -1.07 5.76 -106.52 -0.61 -1.69 16 24 C -0.10 -1.35 9.25 -39.60 -0.37 -1.71 16 25 C -0.13 -1.45 9.96 -39.88 -0.40 -1.85 16 26 C -0.10 -1.04 9.94 -39.95 -0.40 -1.43 16 27 C -0.10 -1.24 9.98 -39.43 -0.39 -1.63 16 28 C 0.13 1.89 6.61 -84.87 -0.56 1.33 16 29 N -0.46 -6.78 10.19 -7.25 -0.07 -6.85 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.78 8.07 -51.92 -0.42 0.36 16 33 H 0.15 1.74 6.55 -52.49 -0.34 1.40 16 34 H 0.41 5.86 6.77 -40.82 -0.28 5.59 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.39 9.81 7.33 -40.82 -0.30 9.51 16 38 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 39 H 0.11 1.37 8.11 -51.93 -0.42 0.95 16 40 H 0.09 1.15 6.67 -51.93 -0.35 0.80 16 41 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.12 1.73 5.01 -51.93 -0.26 1.47 16 44 H 0.17 2.54 4.98 -52.49 -0.26 2.28 16 45 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 46 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 47 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 382.67 15.07 5.77 5.77 Total: -1.00 -31.31 382.67 -10.88 -42.19 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: -6.37 Total: 16.90 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -5.47 Total: -10.63 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: 0.16 Total: -61.84 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.06 Total: -9.11 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.31 -10.88 -42.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699598869.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.290 kcal (2) G-P(sol) polarization free energy of solvation -31.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds