Wall clock time and date at job start Tue Mar 31 2020 22:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 110.65565 * 2 1 4 4 N 1.46494 * 109.47107 * 56.81449 * 3 2 1 5 5 C 1.36940 * 120.00059 * 179.97438 * 4 3 2 6 6 H 1.07991 * 119.99930 * 359.97438 * 5 4 3 7 7 C 1.38816 * 120.00043 * 179.97438 * 5 4 3 8 8 N 1.31620 * 119.99972 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99928 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47230 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47125 * 120.00173 * 9 7 5 12 12 H 1.48504 * 109.46850 * 240.00100 * 9 7 5 13 13 C 1.54619 * 110.74098 * 236.80983 * 2 1 3 14 14 C 1.54001 * 105.04414 * 263.32902 * 13 2 1 15 15 N 1.47476 * 107.08680 * 1.30604 * 14 13 2 16 16 C 1.34779 * 127.03753 * 154.51615 * 15 14 13 17 17 O 1.21551 * 120.00286 * 184.53699 * 16 15 14 18 18 C 1.47884 * 119.99543 * 4.53911 * 16 15 14 19 19 C 1.40575 * 119.71000 * 17.51095 * 18 16 15 20 20 C 1.35811 * 120.73550 * 180.02562 * 19 18 16 21 21 C 1.40549 * 119.98430 * 359.90373 * 20 19 18 22 22 C 1.40813 * 121.13728 * 180.02562 * 21 20 19 23 23 C 1.36553 * 118.20441 * 180.02562 * 22 21 20 24 24 C 1.39425 * 119.93541 * 0.24754 * 23 22 21 25 25 N 1.31025 * 121.71219 * 359.48994 * 24 23 22 26 26 C 1.33752 * 121.34692 * 0.49996 * 25 24 23 27 27 C 1.38415 * 119.70282 * 197.48740 * 18 16 15 28 28 C 1.48124 * 105.93147 * 334.77885 * 15 14 13 29 29 H 1.09006 * 109.46924 * 183.19275 * 1 2 3 30 30 H 1.09002 * 109.47072 * 303.18770 * 1 2 3 31 31 H 1.08992 * 109.47415 * 63.18895 * 1 2 3 32 32 H 1.09001 * 109.46903 * 176.80757 * 3 2 1 33 33 H 1.08997 * 109.47193 * 296.80724 * 3 2 1 34 34 H 0.97007 * 120.00247 * 359.97438 * 4 3 2 35 35 H 0.97003 * 120.00072 * 179.97438 * 8 7 5 36 36 H 1.08996 * 110.32726 * 144.43543 * 13 2 1 37 37 H 1.09000 * 110.41046 * 22.26680 * 13 2 1 38 38 H 1.09001 * 109.91303 * 241.94265 * 14 13 2 39 39 H 1.09007 * 110.06746 * 120.75572 * 14 13 2 40 40 H 1.07999 * 119.62970 * 359.97403 * 19 18 16 41 41 H 1.07998 * 120.00974 * 179.97438 * 20 19 18 42 42 H 1.08004 * 120.89903 * 0.04722 * 22 21 20 43 43 H 1.08001 * 120.03793 * 179.97438 * 23 22 21 44 44 H 1.07996 * 119.14058 * 179.72350 * 24 23 22 45 45 H 1.07994 * 120.23190 * 0.02562 * 27 18 16 46 46 H 1.08998 * 110.66424 * 157.50753 * 28 15 14 47 47 H 1.08997 * 110.65762 * 280.62701 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0697 1.4317 0.0000 4 7 1.5346 2.1552 1.1559 5 6 1.8817 3.4632 1.3656 6 1 2.5503 3.9611 0.6791 7 6 1.3742 4.1490 2.4606 8 7 0.5590 3.5423 3.2970 9 14 1.8473 5.9334 2.7463 10 1 2.7688 6.3795 1.6707 11 1 0.6255 6.7775 2.7338 12 1 2.5240 6.0615 4.0620 13 6 2.0776 -0.7916 -1.2101 14 6 2.3807 -2.1989 -0.6631 15 7 1.9939 -2.2032 0.7600 16 6 1.6327 -3.2703 1.4999 17 8 1.2577 -3.1166 2.6458 18 6 1.6928 -4.6283 0.9174 19 6 2.4547 -4.8561 -0.2418 20 6 2.5240 -6.0947 -0.7945 21 6 1.8307 -7.1663 -0.2060 22 6 1.8860 -8.4604 -0.7584 23 6 1.1889 -9.4573 -0.1379 24 6 0.4449 -9.1772 1.0075 25 7 0.3994 -7.9730 1.5218 26 6 1.0593 -6.9524 0.9633 27 6 0.9985 -5.6638 1.5187 28 6 2.0773 -0.7939 1.2083 29 1 -0.3633 -1.0261 0.0572 30 1 -0.3633 0.5625 0.8601 31 1 -0.3634 0.4635 -0.9171 32 1 3.1580 1.4096 0.0572 33 1 1.7642 1.9351 -0.9172 34 1 0.9343 1.7079 1.7728 35 1 0.2046 4.0214 4.0624 36 1 2.9892 -0.3267 -1.5854 37 1 1.3281 -0.8455 -1.9997 38 1 3.4451 -2.4132 -0.7592 39 1 1.8013 -2.9446 -1.2076 40 1 2.9902 -4.0369 -0.6983 41 1 3.1126 -6.2564 -1.6855 42 1 2.4645 -8.6593 -1.6485 43 1 1.2102 -10.4608 -0.5365 44 1 -0.1052 -9.9743 1.4853 45 1 0.4149 -5.4823 2.4091 46 1 1.4539 -0.6325 2.0878 47 1 3.1113 -0.5158 1.4122 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699851760.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:12 Heat of formation + Delta-G solvation = 50.505537 kcal Electronic energy + Delta-G solvation = -28577.809654 eV Core-core repulsion = 24726.231967 eV Total energy + Delta-G solvation = -3851.577687 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.29434 -40.20169 -38.19030 -36.95163 -34.89276 -33.85179 -32.80309 -31.09570 -30.47966 -30.33562 -29.24476 -26.90342 -25.85038 -24.52534 -24.43359 -23.34078 -22.45221 -22.04276 -20.21108 -18.97970 -18.57716 -17.44678 -17.18241 -16.95879 -16.29574 -15.90501 -15.40120 -14.88448 -14.81585 -14.56490 -14.50359 -14.34569 -13.99385 -13.74349 -13.66977 -13.46135 -13.32338 -12.94741 -12.65404 -12.46191 -12.16488 -12.10157 -12.00382 -11.78774 -11.57263 -11.31855 -10.99048 -10.93549 -10.83488 -10.49186 -10.46106 -10.28575 -9.98241 -9.91800 -9.83973 -9.62113 -9.15967 -8.87244 -8.73835 -8.53341 -6.90359 -5.74057 -3.03194 -0.08495 0.29165 1.53900 2.21308 2.87304 3.11637 3.45005 3.50124 3.52848 3.77143 3.89947 4.14314 4.25280 4.36743 4.45988 4.51670 4.60243 4.65063 4.71688 4.77622 4.90973 4.95474 5.09584 5.26071 5.30714 5.38524 5.46019 5.49370 5.52792 5.60621 5.67517 5.73825 5.83312 5.88211 5.96608 5.98072 6.03594 6.09556 6.13883 6.15645 6.27464 6.38784 6.39733 6.52687 6.66315 6.76343 6.85547 7.51318 7.55430 7.72126 8.13542 8.44286 9.55640 10.12976 10.47141 11.48592 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028214 B = 0.002154 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.160963 B =12996.527369 C =13615.065572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.079 4.079 3 C 0.169 3.831 4 N -0.731 5.731 5 C -0.240 4.240 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.931 5.931 9 Si 0.906 3.094 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.126 4.126 14 C 0.093 3.907 15 N -0.612 5.612 16 C 0.572 3.428 17 O -0.528 6.528 18 C -0.107 4.107 19 C -0.108 4.108 20 C -0.104 4.104 21 C -0.089 4.089 22 C -0.062 4.062 23 C -0.170 4.170 24 C 0.128 3.872 25 N -0.465 5.465 26 C 0.117 3.883 27 C -0.026 4.026 28 C 0.120 3.880 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.021 0.979 33 H 0.024 0.976 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.151 0.849 41 H 0.136 0.864 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.161 0.839 45 H 0.150 0.850 46 H 0.092 0.908 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.094 -26.966 -14.016 30.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.080 4.080 3 C 0.041 3.959 4 N -0.376 5.376 5 C -0.371 4.371 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.579 5.579 9 Si 0.738 3.262 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.164 4.164 14 C -0.030 4.030 15 N -0.346 5.346 16 C 0.361 3.639 17 O -0.405 6.405 18 C -0.112 4.112 19 C -0.126 4.126 20 C -0.122 4.122 21 C -0.091 4.091 22 C -0.088 4.088 23 C -0.190 4.190 24 C -0.046 4.046 25 N -0.173 5.173 26 C -0.004 4.004 27 C -0.045 4.045 28 C -0.002 4.002 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.039 0.961 33 H 0.041 0.959 34 H 0.220 0.780 35 H 0.065 0.935 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.168 0.832 41 H 0.153 0.847 42 H 0.158 0.842 43 H 0.157 0.843 44 H 0.178 0.822 45 H 0.168 0.832 46 H 0.110 0.890 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.477 -26.503 -12.580 29.542 hybrid contribution 0.578 0.594 -0.439 0.938 sum 4.056 -25.909 -13.019 29.278 Atomic orbital electron populations 1.21709 0.93410 1.00683 1.02922 1.21797 0.96669 0.96027 0.93497 1.20625 0.95624 0.87813 0.91826 1.42425 1.56928 1.10864 1.27403 1.19243 1.22961 0.87885 1.07056 0.91158 1.24751 1.00053 0.98313 0.97853 1.69670 1.36063 1.36176 1.16005 0.86131 0.77512 0.85040 0.77566 1.20605 1.21925 1.21908 1.22632 1.02137 0.93601 0.98067 1.22501 0.99557 0.98922 0.81986 1.48675 1.66413 1.08073 1.11390 1.17796 0.77665 0.83213 0.85273 1.90835 1.46541 1.85559 1.17519 1.19907 1.00515 0.93841 0.96961 1.21782 0.97870 0.98457 0.94449 1.20894 0.99345 0.91745 1.00250 1.18978 0.98707 0.95052 0.96338 1.21515 0.96880 0.91474 0.98884 1.21972 0.98738 1.00744 0.97522 1.23031 0.95021 0.93919 0.92581 1.68048 1.18627 0.99842 1.30764 1.18753 0.95519 0.93326 0.92786 1.21253 0.95781 0.88991 0.98493 1.22573 1.01901 0.77279 0.98422 0.93716 0.91051 0.92677 0.96098 0.95863 0.77995 0.93514 0.90059 0.90389 0.91079 0.90266 0.83153 0.84652 0.84174 0.84330 0.82165 0.83220 0.89000 0.90419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 8.31 37.16 0.31 -1.80 16 2 C -0.08 -1.21 0.64 -152.82 -0.10 -1.30 16 3 C 0.17 3.21 5.10 -4.04 -0.02 3.19 16 4 N -0.73 -18.05 5.15 -59.91 -0.31 -18.36 16 5 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 6 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -28.40 13.06 55.49 0.72 -27.68 16 9 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 12 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 13 C -0.13 -1.37 6.09 -25.36 -0.15 -1.53 16 14 C 0.09 0.93 4.99 -2.99 -0.01 0.91 16 15 N -0.61 -8.60 3.21 -171.08 -0.55 -9.15 16 16 C 0.57 8.97 7.75 -12.31 -0.10 8.87 16 17 O -0.53 -10.45 16.63 5.32 0.09 -10.36 16 18 C -0.11 -1.36 5.80 -105.00 -0.61 -1.96 16 19 C -0.11 -1.00 8.06 -39.57 -0.32 -1.32 16 20 C -0.10 -0.82 9.74 -39.58 -0.39 -1.20 16 21 C -0.09 -0.82 5.75 -106.73 -0.61 -1.44 16 22 C -0.06 -0.40 9.88 -39.22 -0.39 -0.79 16 23 C -0.17 -1.00 10.03 -39.75 -0.40 -1.40 16 24 C 0.13 1.00 11.15 -17.45 -0.19 0.81 16 25 N -0.47 -5.35 10.34 -10.98 -0.11 -5.47 16 26 C 0.12 1.38 6.60 -84.87 -0.56 0.82 16 27 C -0.03 -0.33 9.55 -38.68 -0.37 -0.70 16 28 C 0.12 1.97 5.68 -2.31 -0.01 1.96 16 29 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16 30 H 0.07 1.38 6.69 -51.93 -0.35 1.03 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.02 0.40 8.10 -51.93 -0.42 -0.02 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.39 10.13 6.21 -40.82 -0.25 9.87 16 35 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.08 0.80 7.85 -51.93 -0.41 0.39 16 37 H 0.08 0.76 7.86 -51.93 -0.41 0.35 16 38 H 0.07 0.56 7.18 -51.93 -0.37 0.19 16 39 H 0.08 0.66 6.26 -51.93 -0.33 0.33 16 40 H 0.15 1.12 3.95 -52.49 -0.21 0.91 16 41 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 42 H 0.14 0.49 8.06 -52.48 -0.42 0.07 16 43 H 0.14 0.37 8.06 -52.49 -0.42 -0.05 16 44 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 45 H 0.15 2.10 7.71 -52.49 -0.40 1.70 16 46 H 0.09 1.81 7.72 -51.93 -0.40 1.41 16 47 H 0.08 1.28 8.01 -51.93 -0.42 0.87 16 LS Contribution 380.13 15.07 5.73 5.73 Total: -1.00 -35.08 380.13 -10.09 -45.17 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -6.47 Total: 6.82 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -4.17 Total: -4.19 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: -0.25 Total: -60.66 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.08 -10.09 -45.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699851760.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.676 kcal (2) G-P(sol) polarization free energy of solvation -35.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds