Wall clock time and date at job start Tue Mar 31 2020 22:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 110.65565 * 2 1 4 4 N 1.46494 * 109.47107 * 56.81449 * 3 2 1 5 5 C 1.36940 * 120.00059 * 179.97438 * 4 3 2 6 6 H 1.07991 * 119.99930 * 359.97438 * 5 4 3 7 7 C 1.38816 * 120.00043 * 179.97438 * 5 4 3 8 8 N 1.31620 * 119.99972 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99928 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47230 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47125 * 120.00173 * 9 7 5 12 12 H 1.48504 * 109.46850 * 240.00100 * 9 7 5 13 13 C 1.54619 * 110.74098 * 236.80983 * 2 1 3 14 14 C 1.54001 * 105.04414 * 263.32902 * 13 2 1 15 15 N 1.47476 * 107.08680 * 1.30604 * 14 13 2 16 16 C 1.34779 * 127.03753 * 154.51615 * 15 14 13 17 17 O 1.21551 * 120.00286 * 184.53699 * 16 15 14 18 18 C 1.47884 * 119.99543 * 4.53911 * 16 15 14 19 19 C 1.40575 * 119.71000 * 17.51095 * 18 16 15 20 20 C 1.35811 * 120.73550 * 180.02562 * 19 18 16 21 21 C 1.40549 * 119.98430 * 359.90373 * 20 19 18 22 22 C 1.40813 * 121.13728 * 180.02562 * 21 20 19 23 23 C 1.36553 * 118.20441 * 180.02562 * 22 21 20 24 24 C 1.39425 * 119.93541 * 0.24754 * 23 22 21 25 25 N 1.31025 * 121.71219 * 359.48994 * 24 23 22 26 26 C 1.33752 * 121.34692 * 0.49996 * 25 24 23 27 27 C 1.38415 * 119.70282 * 197.48740 * 18 16 15 28 28 C 1.48124 * 105.93147 * 334.77885 * 15 14 13 29 29 H 1.09006 * 109.46924 * 183.19275 * 1 2 3 30 30 H 1.09002 * 109.47072 * 303.18770 * 1 2 3 31 31 H 1.08992 * 109.47415 * 63.18895 * 1 2 3 32 32 H 1.09001 * 109.46903 * 176.80757 * 3 2 1 33 33 H 1.08997 * 109.47193 * 296.80724 * 3 2 1 34 34 H 0.97007 * 120.00247 * 359.97438 * 4 3 2 35 35 H 0.97003 * 120.00072 * 179.97438 * 8 7 5 36 36 H 1.08996 * 110.32726 * 144.43543 * 13 2 1 37 37 H 1.09000 * 110.41046 * 22.26680 * 13 2 1 38 38 H 1.09001 * 109.91303 * 241.94265 * 14 13 2 39 39 H 1.09007 * 110.06746 * 120.75572 * 14 13 2 40 40 H 1.07999 * 119.62970 * 359.97403 * 19 18 16 41 41 H 1.07998 * 120.00974 * 179.97438 * 20 19 18 42 42 H 1.08004 * 120.89903 * 0.04722 * 22 21 20 43 43 H 1.08001 * 120.03793 * 179.97438 * 23 22 21 44 44 H 1.07996 * 119.14058 * 179.72350 * 24 23 22 45 45 H 1.07994 * 120.23190 * 0.02562 * 27 18 16 46 46 H 1.08998 * 110.66424 * 157.50753 * 28 15 14 47 47 H 1.08997 * 110.65762 * 280.62701 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0697 1.4317 0.0000 4 7 1.5346 2.1552 1.1559 5 6 1.8817 3.4632 1.3656 6 1 2.5503 3.9611 0.6791 7 6 1.3742 4.1490 2.4606 8 7 0.5590 3.5423 3.2970 9 14 1.8473 5.9334 2.7463 10 1 2.7688 6.3795 1.6707 11 1 0.6255 6.7775 2.7338 12 1 2.5240 6.0615 4.0620 13 6 2.0776 -0.7916 -1.2101 14 6 2.3807 -2.1989 -0.6631 15 7 1.9939 -2.2032 0.7600 16 6 1.6327 -3.2703 1.4999 17 8 1.2577 -3.1166 2.6458 18 6 1.6928 -4.6283 0.9174 19 6 2.4547 -4.8561 -0.2418 20 6 2.5240 -6.0947 -0.7945 21 6 1.8307 -7.1663 -0.2060 22 6 1.8860 -8.4604 -0.7584 23 6 1.1889 -9.4573 -0.1379 24 6 0.4449 -9.1772 1.0075 25 7 0.3994 -7.9730 1.5218 26 6 1.0593 -6.9524 0.9633 27 6 0.9985 -5.6638 1.5187 28 6 2.0773 -0.7939 1.2083 29 1 -0.3633 -1.0261 0.0572 30 1 -0.3633 0.5625 0.8601 31 1 -0.3634 0.4635 -0.9171 32 1 3.1580 1.4096 0.0572 33 1 1.7642 1.9351 -0.9172 34 1 0.9343 1.7079 1.7728 35 1 0.2046 4.0214 4.0624 36 1 2.9892 -0.3267 -1.5854 37 1 1.3281 -0.8455 -1.9997 38 1 3.4451 -2.4132 -0.7592 39 1 1.8013 -2.9446 -1.2076 40 1 2.9902 -4.0369 -0.6983 41 1 3.1126 -6.2564 -1.6855 42 1 2.4645 -8.6593 -1.6485 43 1 1.2102 -10.4608 -0.5365 44 1 -0.1052 -9.9743 1.4853 45 1 0.4149 -5.4823 2.4091 46 1 1.4539 -0.6325 2.0878 47 1 3.1113 -0.5158 1.4122 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699851760.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:11 Heat of formation + Delta-G solvation = 26.970308 kcal Electronic energy + Delta-G solvation = -28578.830218 eV Core-core repulsion = 24726.231967 eV Total energy + Delta-G solvation = -3852.598251 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.08010 -41.21803 -39.39649 -37.79492 -36.53330 -34.48878 -34.43307 -32.37853 -31.63965 -31.13965 -30.41776 -28.13443 -27.44935 -25.76791 -25.14475 -24.58113 -23.41953 -23.13159 -21.16844 -20.21759 -19.64964 -18.98713 -18.02959 -17.87931 -17.31157 -17.09682 -16.51242 -16.40472 -15.74578 -15.58770 -15.51812 -15.35592 -15.18237 -14.98516 -14.75455 -14.58163 -14.53101 -13.94887 -13.90704 -13.54807 -13.53604 -13.03480 -13.01930 -12.93836 -12.83043 -12.72080 -12.64957 -12.28705 -12.10186 -11.99854 -11.65480 -11.57332 -11.47318 -11.35351 -11.16467 -10.93967 -10.49102 -9.91326 -9.77238 -9.31444 -8.97062 -7.93419 -5.21990 -0.79394 -0.36357 0.85145 1.42851 1.46558 1.47857 1.57874 1.75821 2.17183 2.56623 3.06658 3.15349 3.38360 3.41314 3.52301 3.59483 3.63579 3.81999 3.86604 3.97408 4.04555 4.05269 4.18380 4.25282 4.28254 4.32533 4.42240 4.57860 4.60956 4.67644 4.71735 4.77208 4.83024 4.87165 4.91870 4.97318 5.04684 5.06588 5.10178 5.12835 5.18196 5.29821 5.30797 5.36587 5.46340 5.52495 5.53167 5.78370 6.28265 6.42601 6.91281 6.95081 7.34391 8.12633 8.33213 9.30614 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028214 B = 0.002154 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.160963 B =12996.527369 C =13615.065572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.072 4.072 3 C 0.167 3.833 4 N -0.746 5.746 5 C -0.237 4.237 6 H 0.082 0.918 7 C -0.083 4.083 8 N -0.974 5.974 9 Si 0.974 3.026 10 H -0.260 1.260 11 H -0.296 1.296 12 H -0.298 1.298 13 C -0.114 4.114 14 C 0.087 3.913 15 N -0.608 5.608 16 C 0.563 3.437 17 O -0.591 6.591 18 C -0.113 4.113 19 C -0.116 4.116 20 C -0.078 4.078 21 C -0.101 4.101 22 C -0.055 4.055 23 C -0.163 4.163 24 C 0.126 3.874 25 N -0.517 5.517 26 C 0.093 3.907 27 C -0.057 4.057 28 C 0.122 3.878 29 H 0.049 0.951 30 H 0.027 0.973 31 H 0.070 0.930 32 H 0.032 0.968 33 H 0.034 0.966 34 H 0.372 0.628 35 H 0.248 0.752 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.176 0.824 41 H 0.185 0.815 42 H 0.184 0.816 43 H 0.180 0.820 44 H 0.185 0.815 45 H 0.114 0.886 46 H 0.041 0.959 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.725 -29.495 -19.303 35.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.074 4.074 3 C 0.040 3.960 4 N -0.390 5.390 5 C -0.369 4.369 6 H 0.100 0.900 7 C -0.275 4.275 8 N -0.625 5.625 9 Si 0.803 3.197 10 H -0.185 1.185 11 H -0.223 1.223 12 H -0.225 1.225 13 C -0.152 4.152 14 C -0.033 4.033 15 N -0.339 5.339 16 C 0.354 3.646 17 O -0.473 6.473 18 C -0.118 4.118 19 C -0.134 4.134 20 C -0.096 4.096 21 C -0.104 4.104 22 C -0.080 4.080 23 C -0.183 4.183 24 C -0.047 4.047 25 N -0.226 5.226 26 C -0.026 4.026 27 C -0.077 4.077 28 C -0.001 4.001 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.089 0.911 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.204 0.796 35 H 0.057 0.943 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.193 0.807 41 H 0.202 0.798 42 H 0.201 0.799 43 H 0.197 0.803 44 H 0.202 0.798 45 H 0.132 0.868 46 H 0.060 0.940 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.152 -29.038 -17.963 34.695 hybrid contribution -0.255 1.169 1.150 1.660 sum 5.897 -27.869 -16.813 33.077 Atomic orbital electron populations 1.21617 0.94407 1.00335 1.01636 1.21670 0.95737 0.94450 0.95501 1.20842 0.95937 0.89341 0.89842 1.42702 1.56855 1.10507 1.28889 1.19718 1.21627 0.89056 1.06463 0.90030 1.25619 1.00947 1.02647 0.98265 1.69858 1.38147 1.37785 1.16753 0.85054 0.77116 0.80036 0.77453 1.18451 1.22344 1.22529 1.22655 1.03531 0.92979 0.96067 1.22916 1.02209 0.99182 0.79039 1.48702 1.65547 1.06425 1.13245 1.18463 0.76646 0.84783 0.84725 1.90789 1.49467 1.86594 1.20410 1.19713 1.02095 0.91357 0.98637 1.21939 0.97882 1.00251 0.93290 1.21409 0.97538 0.90168 1.00513 1.19328 0.98330 0.97220 0.95478 1.22032 0.96430 0.89866 0.99677 1.22422 0.97052 1.02641 0.96151 1.23673 0.94656 0.93186 0.93191 1.68003 1.20599 1.01290 1.32737 1.18809 0.96906 0.92617 0.94285 1.21107 0.97269 0.90829 0.98480 1.22336 1.00702 0.79580 0.97500 0.93205 0.95419 0.91084 0.95047 0.94805 0.79571 0.94280 0.87759 0.88191 0.87494 0.87609 0.80729 0.79815 0.79883 0.80273 0.79788 0.86760 0.93993 0.90578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.09 8.31 71.98 0.60 -3.49 16 2 C -0.07 -2.19 0.64 -51.09 -0.03 -2.22 16 3 C 0.17 6.23 5.10 86.38 0.44 6.67 16 4 N -0.75 -38.00 5.15 -343.47 -1.77 -39.77 16 5 C -0.24 -13.26 9.99 84.03 0.84 -12.42 16 6 H 0.08 4.30 7.83 -2.92 -0.02 4.28 16 7 C -0.08 -4.90 5.50 84.86 0.47 -4.43 16 8 N -0.97 -62.33 13.06 21.65 0.28 -62.04 16 9 Si 0.97 47.25 29.55 68.60 2.03 49.27 16 10 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 11 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 12 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 13 C -0.11 -2.05 6.09 31.48 0.19 -1.86 16 14 C 0.09 1.42 4.99 86.53 0.43 1.85 16 15 N -0.61 -17.28 3.21 -813.44 -2.61 -19.89 16 16 C 0.56 19.04 7.75 86.80 0.67 19.71 16 17 O -0.59 -26.51 16.63 -3.88 -0.06 -26.58 16 18 C -0.11 -2.97 5.80 -20.11 -0.12 -3.09 16 19 C -0.12 -1.83 8.06 22.28 0.18 -1.65 16 20 C -0.08 -0.87 9.74 22.27 0.22 -0.66 16 21 C -0.10 -1.59 5.75 -21.23 -0.12 -1.71 16 22 C -0.05 -0.44 9.88 22.51 0.22 -0.22 16 23 C -0.16 -1.24 10.03 22.16 0.22 -1.02 16 24 C 0.13 1.76 11.15 85.10 0.95 2.71 16 25 N -0.52 -12.34 10.34 -188.65 -1.95 -14.29 16 26 C 0.09 2.27 6.60 40.25 0.27 2.53 16 27 C -0.06 -1.65 9.55 22.85 0.22 -1.44 16 28 C 0.12 4.22 5.68 86.61 0.49 4.71 16 29 H 0.05 1.58 8.08 -2.38 -0.02 1.56 16 30 H 0.03 1.14 6.69 -2.39 -0.02 1.13 16 31 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.03 1.13 8.10 -2.39 -0.02 1.11 16 33 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.37 20.87 6.21 -92.70 -0.58 20.30 16 35 H 0.25 15.47 8.31 -92.71 -0.77 14.69 16 36 H 0.10 1.49 7.85 -2.39 -0.02 1.47 16 37 H 0.10 1.45 7.86 -2.39 -0.02 1.43 16 38 H 0.11 1.09 7.18 -2.39 -0.02 1.07 16 39 H 0.11 1.26 6.26 -2.38 -0.01 1.24 16 40 H 0.18 1.75 3.95 -2.91 -0.01 1.74 16 41 H 0.18 0.29 8.06 -2.91 -0.02 0.27 16 42 H 0.18 -0.08 8.06 -2.91 -0.02 -0.11 16 43 H 0.18 -0.10 8.06 -2.91 -0.02 -0.13 16 44 H 0.19 1.39 8.06 -2.91 -0.02 1.36 16 45 H 0.11 3.92 7.71 -2.91 -0.02 3.90 16 46 H 0.04 1.86 7.72 -2.39 -0.02 1.84 16 47 H 0.08 2.62 8.01 -2.39 -0.02 2.60 16 Total: -1.00 -87.25 380.13 2.48 -84.78 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 0.42 Total: 24.54 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: 6.14 Total: 3.97 kcal Atomic # 7 Polarization: -129.94 SS G_CDS: -6.05 Total: -135.98 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.06 Total: -26.58 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.27 kcal Total: -87.25 2.48 -84.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699851760.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.746 kcal (2) G-P(sol) polarization free energy of solvation -87.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds