Wall clock time and date at job start Tue Mar 31 2020 22:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 110.64308 * 2 1 4 4 N 1.46500 * 109.47085 * 298.31305 * 3 2 1 5 5 C 1.36935 * 119.99766 * 179.97438 * 4 3 2 6 6 H 1.08000 * 120.00140 * 359.97438 * 5 4 3 7 7 C 1.38817 * 119.99826 * 179.97438 * 5 4 3 8 8 N 1.31624 * 119.99744 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99793 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46826 * 60.00194 * 9 7 5 11 11 H 1.48497 * 109.46638 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47068 * 299.99784 * 9 7 5 13 13 C 1.55153 * 110.87357 * 123.24770 * 2 1 3 14 14 C 1.54911 * 101.58328 * 82.92903 * 13 2 1 15 15 N 1.47429 * 104.82601 * 37.01603 * 14 13 2 16 16 C 1.34775 * 125.64778 * 156.14101 * 15 14 13 17 17 O 1.21549 * 119.99929 * 354.00250 * 16 15 14 18 18 C 1.47881 * 120.00115 * 174.00599 * 16 15 14 19 19 C 1.40577 * 119.70403 * 7.29635 * 18 16 15 20 20 C 1.35810 * 120.73055 * 179.73084 * 19 18 16 21 21 C 1.40554 * 119.98303 * 0.56734 * 20 19 18 22 22 C 1.40819 * 121.12477 * 179.71647 * 21 20 19 23 23 C 1.36555 * 118.19654 * 179.97438 * 22 21 20 24 24 C 1.39424 * 119.93595 * 359.97438 * 23 22 21 25 25 N 1.31013 * 121.71634 * 359.97438 * 24 23 22 26 26 C 1.33749 * 121.35326 * 0.04140 * 25 24 23 27 27 C 1.38406 * 119.70570 * 187.57652 * 18 16 15 28 28 C 1.47020 * 108.70582 * 335.86766 * 15 14 13 29 29 H 1.08992 * 109.47069 * 181.68271 * 1 2 3 30 30 H 1.08996 * 109.47480 * 301.69161 * 1 2 3 31 31 H 1.09006 * 109.46583 * 61.68643 * 1 2 3 32 32 H 1.09003 * 109.46626 * 58.31006 * 3 2 1 33 33 H 1.08992 * 109.47213 * 178.30915 * 3 2 1 34 34 H 0.96998 * 119.99888 * 359.97438 * 4 3 2 35 35 H 0.97001 * 119.99255 * 179.97438 * 8 7 5 36 36 H 1.09000 * 111.00790 * 201.00866 * 13 2 1 37 37 H 1.09008 * 111.00070 * 324.86144 * 13 2 1 38 38 H 1.08994 * 110.36753 * 278.17654 * 14 13 2 39 39 H 1.08997 * 110.36670 * 155.84478 * 14 13 2 40 40 H 1.07995 * 119.63304 * 0.02562 * 19 18 16 41 41 H 1.08000 * 120.01188 * 180.25754 * 20 19 18 42 42 H 1.07998 * 120.90297 * 359.95758 * 22 21 20 43 43 H 1.07999 * 120.03232 * 180.02562 * 23 22 21 44 44 H 1.07998 * 119.14262 * 180.02562 * 24 23 22 45 45 H 1.08002 * 120.23558 * 359.95549 * 27 18 16 46 46 H 1.08998 * 109.88487 * 120.47582 * 28 15 14 47 47 H 1.09000 * 109.88509 * 241.64797 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0694 1.4318 0.0000 4 7 1.6285 2.1198 -1.2160 5 6 1.9917 3.4216 -1.4360 6 1 2.6028 3.9414 -0.7129 7 6 1.5744 4.0733 -2.5884 8 7 0.8301 3.4397 -3.4699 9 14 2.0704 5.8490 -2.8889 10 1 3.5513 5.9479 -2.9371 11 1 1.5017 6.3099 -4.1809 12 1 1.5529 6.7006 -1.7878 13 6 2.0828 -0.7948 1.2124 14 6 2.0191 -2.2501 0.6854 15 7 2.3757 -2.1506 -0.7416 16 6 2.8862 -3.1448 -1.4949 17 8 3.1909 -4.2026 -0.9796 18 6 3.0757 -2.9487 -2.9483 19 6 2.8679 -1.6780 -3.5127 20 6 3.0412 -1.4732 -4.8440 21 6 3.4210 -2.5410 -5.6754 22 6 3.6016 -2.3570 -7.0598 23 6 3.9715 -3.4356 -7.8111 24 6 4.1601 -4.6758 -7.2026 25 7 3.9922 -4.8434 -5.9141 26 6 3.6301 -3.8285 -5.1217 27 6 3.4503 -4.0191 -3.7418 28 6 2.0761 -0.7891 -1.2086 29 1 -0.3633 -1.0271 0.0302 30 1 -0.3634 0.5398 0.8744 31 1 -0.3633 0.4875 -0.9048 32 1 1.6922 1.9621 0.8745 33 1 3.1587 1.4097 0.0303 34 1 1.0794 1.6530 -1.8652 35 1 0.5382 3.8952 -4.2750 36 1 3.1096 -0.5043 1.4347 37 1 1.4444 -0.6677 2.0868 38 1 1.0115 -2.6505 0.7977 39 1 2.7382 -2.8765 1.2132 40 1 2.5718 -0.8546 -2.8798 41 1 2.8825 -0.4913 -5.2647 42 1 3.4514 -1.3893 -7.5150 43 1 4.1187 -3.3279 -8.8756 44 1 4.4531 -5.5201 -7.8090 45 1 3.6047 -4.9937 -3.3027 46 1 2.9852 -0.3161 -1.5800 47 1 1.3252 -0.8247 -1.9979 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699851761.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:15 Heat of formation + Delta-G solvation = 57.579629 kcal Electronic energy + Delta-G solvation = -29261.159999 eV Core-core repulsion = 25409.889067 eV Total energy + Delta-G solvation = -3851.270931 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.11858 -40.20967 -38.20317 -36.78223 -34.83855 -33.58427 -32.85506 -31.45947 -30.27111 -30.13008 -29.09358 -26.80257 -25.86347 -25.01376 -23.93554 -23.24840 -22.32748 -21.77370 -20.04436 -19.28101 -18.59006 -17.17711 -17.03732 -16.86564 -16.14915 -16.02783 -15.19594 -14.85811 -14.60199 -14.50714 -14.32777 -14.12818 -13.91691 -13.85935 -13.61623 -13.21269 -13.16730 -13.07585 -12.70463 -12.23659 -12.07866 -11.91622 -11.86160 -11.75370 -11.66837 -11.45470 -11.09626 -10.87126 -10.67584 -10.57506 -10.41901 -10.29389 -10.10254 -9.81336 -9.70720 -9.64101 -8.95653 -8.91937 -8.65633 -8.30491 -7.01899 -5.85534 -3.14109 0.15442 0.56584 1.77879 2.44971 2.92871 3.24808 3.38522 3.43802 3.44077 4.03033 4.09886 4.37219 4.47531 4.48634 4.58674 4.63309 4.74022 4.77869 4.93178 4.95732 5.02693 5.21017 5.29355 5.33677 5.36610 5.48201 5.55336 5.65355 5.66583 5.73148 5.79324 5.82429 5.85069 5.89223 5.96856 6.00610 6.08106 6.16963 6.26091 6.26560 6.32439 6.37413 6.41720 6.54474 6.64276 6.69308 6.73001 7.48941 7.62787 7.73952 8.12811 8.33272 9.45267 10.00229 10.35384 11.36978 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008803 B = 0.003860 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3180.067869 B = 7251.378703 C =10076.837816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.079 4.079 3 C 0.167 3.833 4 N -0.731 5.731 5 C -0.241 4.241 6 H 0.070 0.930 7 C -0.010 4.010 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C -0.123 4.123 14 C 0.108 3.892 15 N -0.609 5.609 16 C 0.574 3.426 17 O -0.542 6.542 18 C -0.110 4.110 19 C -0.129 4.129 20 C -0.094 4.094 21 C -0.086 4.086 22 C -0.057 4.057 23 C -0.173 4.173 24 C 0.125 3.875 25 N -0.469 5.469 26 C 0.113 3.887 27 C -0.030 4.030 28 C 0.100 3.900 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.027 0.973 33 H 0.023 0.977 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.175 0.825 41 H 0.142 0.858 42 H 0.143 0.857 43 H 0.138 0.862 44 H 0.159 0.841 45 H 0.147 0.853 46 H 0.089 0.911 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.074 -13.003 -2.314 13.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.080 4.080 3 C 0.039 3.961 4 N -0.375 5.375 5 C -0.372 4.372 6 H 0.088 0.912 7 C -0.206 4.206 8 N -0.581 5.581 9 Si 0.736 3.264 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.162 4.162 14 C -0.014 4.014 15 N -0.342 5.342 16 C 0.364 3.636 17 O -0.421 6.421 18 C -0.115 4.115 19 C -0.146 4.146 20 C -0.112 4.112 21 C -0.088 4.088 22 C -0.083 4.083 23 C -0.193 4.193 24 C -0.048 4.048 25 N -0.176 5.176 26 C -0.008 4.008 27 C -0.050 4.050 28 C -0.022 4.022 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.044 0.956 33 H 0.040 0.960 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.192 0.808 41 H 0.160 0.840 42 H 0.160 0.840 43 H 0.156 0.844 44 H 0.176 0.824 45 H 0.165 0.835 46 H 0.107 0.893 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.433 -14.252 -1.562 14.743 hybrid contribution -0.075 1.818 -1.044 2.098 sum 3.359 -12.434 -2.606 13.141 Atomic orbital electron populations 1.21769 0.93107 1.00817 1.03357 1.21896 0.96617 0.96195 0.93293 1.20677 0.96201 0.87985 0.91261 1.42351 1.62657 1.11829 1.20710 1.19165 1.26316 0.88502 1.03204 0.91249 1.24691 1.00446 0.98229 0.97235 1.69631 1.40440 1.36517 1.11562 0.86303 0.77993 0.84982 0.77110 1.21292 1.21710 1.21294 1.22884 1.02322 0.93184 0.97773 1.22259 1.00619 0.97884 0.80641 1.48366 1.62564 1.11832 1.11415 1.17875 0.77095 0.82721 0.85871 1.90757 1.51264 1.26320 1.73768 1.19833 1.03864 0.94652 0.93180 1.22695 0.97082 0.97933 0.96876 1.21098 0.98209 0.98455 0.93451 1.19063 1.00265 0.94760 0.94719 1.21600 0.94578 0.99806 0.92344 1.21941 1.01717 0.94045 1.01624 1.22960 0.94366 0.96746 0.90760 1.67995 1.11621 1.32352 1.05676 1.18713 0.99275 0.88978 0.93812 1.21141 0.94137 0.99312 0.90422 1.22753 1.01051 0.80913 0.97494 0.93348 0.92211 0.91119 0.95564 0.95957 0.78222 0.93453 0.90275 0.89571 0.91278 0.90341 0.80848 0.84015 0.83964 0.84441 0.82374 0.83533 0.89300 0.89914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 8.25 37.16 0.31 -1.52 16 2 C -0.08 -1.11 0.61 -152.67 -0.09 -1.20 16 3 C 0.17 2.94 5.07 -4.04 -0.02 2.92 16 4 N -0.73 -16.33 5.15 -59.91 -0.31 -16.64 16 5 C -0.24 -6.21 9.99 -15.06 -0.15 -6.36 16 6 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 7 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 8 N -0.93 -26.02 13.06 55.49 0.72 -25.29 16 9 Si 0.91 21.26 29.55 -169.99 -5.02 16.23 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 12 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 13 C -0.12 -1.42 6.03 -24.58 -0.15 -1.57 16 14 C 0.11 1.33 6.62 -2.53 -0.02 1.31 16 15 N -0.61 -8.73 3.33 -178.93 -0.60 -9.32 16 16 C 0.57 9.26 7.80 -12.31 -0.10 9.16 16 17 O -0.54 -10.01 16.55 5.32 0.09 -9.92 16 18 C -0.11 -1.68 5.87 -105.01 -0.62 -2.29 16 19 C -0.13 -1.86 8.50 -39.57 -0.34 -2.20 16 20 C -0.09 -1.28 9.74 -39.58 -0.39 -1.66 16 21 C -0.09 -1.15 5.75 -106.72 -0.61 -1.76 16 22 C -0.06 -0.61 9.88 -39.21 -0.39 -0.99 16 23 C -0.17 -1.56 10.03 -39.75 -0.40 -1.96 16 24 C 0.13 1.27 11.15 -17.46 -0.19 1.08 16 25 N -0.47 -6.37 10.34 -10.98 -0.11 -6.48 16 26 C 0.11 1.63 6.60 -84.87 -0.56 1.07 16 27 C -0.03 -0.46 9.56 -38.68 -0.37 -0.83 16 28 C 0.10 1.43 3.46 -3.06 -0.01 1.42 16 29 H 0.05 0.59 7.46 -51.93 -0.39 0.20 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.07 1.13 7.11 -51.93 -0.37 0.76 16 32 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.02 0.41 8.13 -51.93 -0.42 -0.02 16 34 H 0.38 8.87 6.37 -40.82 -0.26 8.61 16 35 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.08 0.91 8.04 -51.93 -0.42 0.49 16 37 H 0.09 0.84 8.04 -51.92 -0.42 0.42 16 38 H 0.07 0.79 7.73 -51.93 -0.40 0.39 16 39 H 0.08 0.97 7.99 -51.93 -0.41 0.56 16 40 H 0.18 2.54 2.65 -61.89 -0.16 2.38 16 41 H 0.14 1.79 8.06 -52.49 -0.42 1.36 16 42 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 43 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 44 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 45 H 0.15 2.21 7.62 -52.49 -0.40 1.80 16 46 H 0.09 1.37 6.41 -51.93 -0.33 1.04 16 47 H 0.08 1.21 6.42 -51.93 -0.33 0.88 16 LS Contribution 378.33 15.07 5.70 5.70 Total: -1.00 -31.34 378.33 -10.12 -41.46 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -6.40 Total: 10.00 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -4.19 Total: -5.73 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: -0.29 Total: -57.74 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.92 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.34 -10.12 -41.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699851761.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.040 kcal (2) G-P(sol) polarization free energy of solvation -31.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds