Wall clock time and date at job start Tue Mar 31 2020 22:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 110.64308 * 2 1 4 4 N 1.46500 * 109.47085 * 298.31305 * 3 2 1 5 5 C 1.36935 * 119.99766 * 179.97438 * 4 3 2 6 6 H 1.08000 * 120.00140 * 359.97438 * 5 4 3 7 7 C 1.38817 * 119.99826 * 179.97438 * 5 4 3 8 8 N 1.31624 * 119.99744 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99793 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46826 * 60.00194 * 9 7 5 11 11 H 1.48497 * 109.46638 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47068 * 299.99784 * 9 7 5 13 13 C 1.55153 * 110.87357 * 123.24770 * 2 1 3 14 14 C 1.54911 * 101.58328 * 82.92903 * 13 2 1 15 15 N 1.47429 * 104.82601 * 37.01603 * 14 13 2 16 16 C 1.34775 * 125.64778 * 156.14101 * 15 14 13 17 17 O 1.21549 * 119.99929 * 354.00250 * 16 15 14 18 18 C 1.47881 * 120.00115 * 174.00599 * 16 15 14 19 19 C 1.40577 * 119.70403 * 7.29635 * 18 16 15 20 20 C 1.35810 * 120.73055 * 179.73084 * 19 18 16 21 21 C 1.40554 * 119.98303 * 0.56734 * 20 19 18 22 22 C 1.40819 * 121.12477 * 179.71647 * 21 20 19 23 23 C 1.36555 * 118.19654 * 179.97438 * 22 21 20 24 24 C 1.39424 * 119.93595 * 359.97438 * 23 22 21 25 25 N 1.31013 * 121.71634 * 359.97438 * 24 23 22 26 26 C 1.33749 * 121.35326 * 0.04140 * 25 24 23 27 27 C 1.38406 * 119.70570 * 187.57652 * 18 16 15 28 28 C 1.47020 * 108.70582 * 335.86766 * 15 14 13 29 29 H 1.08992 * 109.47069 * 181.68271 * 1 2 3 30 30 H 1.08996 * 109.47480 * 301.69161 * 1 2 3 31 31 H 1.09006 * 109.46583 * 61.68643 * 1 2 3 32 32 H 1.09003 * 109.46626 * 58.31006 * 3 2 1 33 33 H 1.08992 * 109.47213 * 178.30915 * 3 2 1 34 34 H 0.96998 * 119.99888 * 359.97438 * 4 3 2 35 35 H 0.97001 * 119.99255 * 179.97438 * 8 7 5 36 36 H 1.09000 * 111.00790 * 201.00866 * 13 2 1 37 37 H 1.09008 * 111.00070 * 324.86144 * 13 2 1 38 38 H 1.08994 * 110.36753 * 278.17654 * 14 13 2 39 39 H 1.08997 * 110.36670 * 155.84478 * 14 13 2 40 40 H 1.07995 * 119.63304 * 0.02562 * 19 18 16 41 41 H 1.08000 * 120.01188 * 180.25754 * 20 19 18 42 42 H 1.07998 * 120.90297 * 359.95758 * 22 21 20 43 43 H 1.07999 * 120.03232 * 180.02562 * 23 22 21 44 44 H 1.07998 * 119.14262 * 180.02562 * 24 23 22 45 45 H 1.08002 * 120.23558 * 359.95549 * 27 18 16 46 46 H 1.08998 * 109.88487 * 120.47582 * 28 15 14 47 47 H 1.09000 * 109.88509 * 241.64797 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0694 1.4318 0.0000 4 7 1.6285 2.1198 -1.2160 5 6 1.9917 3.4216 -1.4360 6 1 2.6028 3.9414 -0.7129 7 6 1.5744 4.0733 -2.5884 8 7 0.8301 3.4397 -3.4699 9 14 2.0704 5.8490 -2.8889 10 1 3.5513 5.9479 -2.9371 11 1 1.5017 6.3099 -4.1809 12 1 1.5529 6.7006 -1.7878 13 6 2.0828 -0.7948 1.2124 14 6 2.0191 -2.2501 0.6854 15 7 2.3757 -2.1506 -0.7416 16 6 2.8862 -3.1448 -1.4949 17 8 3.1909 -4.2026 -0.9796 18 6 3.0757 -2.9487 -2.9483 19 6 2.8679 -1.6780 -3.5127 20 6 3.0412 -1.4732 -4.8440 21 6 3.4210 -2.5410 -5.6754 22 6 3.6016 -2.3570 -7.0598 23 6 3.9715 -3.4356 -7.8111 24 6 4.1601 -4.6758 -7.2026 25 7 3.9922 -4.8434 -5.9141 26 6 3.6301 -3.8285 -5.1217 27 6 3.4503 -4.0191 -3.7418 28 6 2.0761 -0.7891 -1.2086 29 1 -0.3633 -1.0271 0.0302 30 1 -0.3634 0.5398 0.8744 31 1 -0.3633 0.4875 -0.9048 32 1 1.6922 1.9621 0.8745 33 1 3.1587 1.4097 0.0303 34 1 1.0794 1.6530 -1.8652 35 1 0.5382 3.8952 -4.2750 36 1 3.1096 -0.5043 1.4347 37 1 1.4444 -0.6677 2.0868 38 1 1.0115 -2.6505 0.7977 39 1 2.7382 -2.8765 1.2132 40 1 2.5718 -0.8546 -2.8798 41 1 2.8825 -0.4913 -5.2647 42 1 3.4514 -1.3893 -7.5150 43 1 4.1187 -3.3279 -8.8756 44 1 4.4531 -5.5201 -7.8090 45 1 3.6047 -4.9937 -3.3027 46 1 2.9852 -0.3161 -1.5800 47 1 1.3252 -0.8247 -1.9979 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699851761.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:14 Heat of formation + Delta-G solvation = 39.258893 kcal Electronic energy + Delta-G solvation = -29261.954446 eV Core-core repulsion = 25409.889067 eV Total energy + Delta-G solvation = -3852.065378 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.17633 -41.28567 -39.43631 -37.83916 -36.43738 -34.51860 -34.36114 -32.74354 -31.70164 -31.16943 -30.22060 -27.97712 -27.35975 -26.17223 -25.10054 -24.54623 -23.46897 -22.94927 -21.17426 -20.46533 -19.77983 -18.93893 -18.01807 -17.85536 -17.25568 -17.16288 -16.61072 -16.32383 -15.77914 -15.64373 -15.41997 -15.30081 -15.24698 -15.02341 -14.82842 -14.74813 -14.43260 -14.02384 -13.79152 -13.47608 -13.31945 -13.10989 -13.00282 -12.86628 -12.82218 -12.75560 -12.65752 -12.51255 -12.16568 -11.94400 -11.61753 -11.60166 -11.49114 -11.29803 -11.08283 -10.84654 -10.55009 -9.94195 -9.80011 -9.34854 -8.90671 -7.88142 -5.14783 -0.84781 -0.40607 0.79747 1.37340 1.52802 1.53129 1.59030 1.78108 2.15494 2.60965 3.03147 3.09186 3.31283 3.42911 3.47777 3.50171 3.66602 3.78738 3.80394 3.92405 4.00392 4.01474 4.14465 4.25341 4.28646 4.34905 4.39060 4.52700 4.54639 4.68246 4.70798 4.76110 4.82086 4.85476 4.89691 4.99443 5.04769 5.09452 5.10206 5.12062 5.20613 5.24991 5.29192 5.34194 5.47382 5.51391 5.58320 5.72759 6.27424 6.34198 6.84642 6.89868 7.42614 8.16766 8.41685 9.34413 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008803 B = 0.003860 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3180.067869 B = 7251.378703 C =10076.837816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C 0.167 3.833 4 N -0.738 5.738 5 C -0.242 4.242 6 H 0.072 0.928 7 C -0.065 4.065 8 N -0.962 5.962 9 Si 0.962 3.038 10 H -0.282 1.282 11 H -0.297 1.297 12 H -0.283 1.283 13 C -0.110 4.110 14 C 0.104 3.896 15 N -0.605 5.605 16 C 0.571 3.429 17 O -0.573 6.573 18 C -0.122 4.122 19 C -0.140 4.140 20 C -0.094 4.094 21 C -0.098 4.098 22 C -0.067 4.067 23 C -0.156 4.156 24 C 0.130 3.870 25 N -0.502 5.502 26 C 0.094 3.906 27 C -0.040 4.040 28 C 0.108 3.892 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.043 0.957 32 H 0.031 0.969 33 H 0.022 0.978 34 H 0.378 0.622 35 H 0.250 0.750 36 H 0.081 0.919 37 H 0.113 0.887 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.169 0.831 41 H 0.150 0.850 42 H 0.166 0.834 43 H 0.181 0.819 44 H 0.197 0.803 45 H 0.137 0.863 46 H 0.076 0.924 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.459 -13.004 -3.114 13.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C 0.040 3.960 4 N -0.381 5.381 5 C -0.374 4.374 6 H 0.090 0.910 7 C -0.258 4.258 8 N -0.612 5.612 9 Si 0.792 3.208 10 H -0.208 1.208 11 H -0.224 1.224 12 H -0.209 1.209 13 C -0.148 4.148 14 C -0.018 4.018 15 N -0.337 5.337 16 C 0.362 3.638 17 O -0.454 6.454 18 C -0.127 4.127 19 C -0.158 4.158 20 C -0.112 4.112 21 C -0.100 4.100 22 C -0.092 4.092 23 C -0.175 4.175 24 C -0.043 4.043 25 N -0.211 5.211 26 C -0.025 4.025 27 C -0.060 4.060 28 C -0.014 4.014 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.039 0.961 34 H 0.211 0.789 35 H 0.059 0.941 36 H 0.100 0.900 37 H 0.132 0.868 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.186 0.814 41 H 0.167 0.833 42 H 0.184 0.816 43 H 0.199 0.801 44 H 0.213 0.787 45 H 0.155 0.845 46 H 0.094 0.906 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.826 -14.241 -2.311 14.925 hybrid contribution -0.134 1.748 -0.905 1.973 sum 3.691 -12.493 -3.216 13.418 Atomic orbital electron populations 1.21701 0.92579 1.01757 1.02388 1.21777 0.96869 0.94175 0.94489 1.20785 0.96079 0.89727 0.89368 1.42482 1.62459 1.11107 1.22094 1.19521 1.25204 0.89834 1.02847 0.91016 1.25346 1.01344 1.01531 0.97537 1.69765 1.41973 1.37614 1.11876 0.85394 0.77674 0.81232 0.76520 1.20814 1.22362 1.20908 1.22868 1.02958 0.91618 0.97338 1.22460 1.01404 0.98560 0.79328 1.48397 1.61681 1.11328 1.12258 1.18055 0.76850 0.82575 0.86351 1.90724 1.52888 1.27444 1.74381 1.19788 1.05008 0.95079 0.92818 1.22608 0.98296 0.97476 0.97382 1.21243 0.97694 0.99034 0.93256 1.19257 1.00473 0.94050 0.96257 1.21960 0.94510 1.01668 0.91109 1.22421 0.98923 0.92672 1.03527 1.23746 0.92035 0.98642 0.89904 1.68028 1.13318 1.32414 1.07326 1.18799 1.00054 0.89940 0.93722 1.21148 0.94753 0.98856 0.91263 1.22606 1.00291 0.80915 0.97616 0.91565 0.91310 0.93772 0.95122 0.96058 0.78910 0.94097 0.89988 0.86822 0.89898 0.90202 0.81424 0.83260 0.81632 0.80136 0.78674 0.84528 0.90621 0.90479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.34 8.25 71.98 0.59 -2.75 16 2 C -0.07 -1.96 0.61 -50.99 -0.03 -1.99 16 3 C 0.17 5.79 5.07 86.38 0.44 6.23 16 4 N -0.74 -33.15 5.15 -343.44 -1.77 -34.92 16 5 C -0.24 -12.47 9.99 84.04 0.84 -11.63 16 6 H 0.07 3.59 7.83 -2.91 -0.02 3.57 16 7 C -0.06 -3.46 5.50 84.86 0.47 -2.99 16 8 N -0.96 -54.32 13.06 21.65 0.28 -54.04 16 9 Si 0.96 43.70 29.55 68.60 2.03 45.73 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.30 -13.69 7.11 99.48 0.71 -12.99 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 13 C -0.11 -2.29 6.03 31.99 0.19 -2.10 16 14 C 0.10 2.43 6.62 86.85 0.58 3.00 16 15 N -0.61 -17.52 3.33 -838.29 -2.79 -20.30 16 16 C 0.57 19.17 7.80 86.80 0.68 19.84 16 17 O -0.57 -21.98 16.55 -3.87 -0.06 -22.04 16 18 C -0.12 -3.93 5.87 -20.11 -0.12 -4.05 16 19 C -0.14 -4.28 8.50 22.28 0.19 -4.09 16 20 C -0.09 -2.62 9.74 22.27 0.22 -2.41 16 21 C -0.10 -2.60 5.75 -21.23 -0.12 -2.72 16 22 C -0.07 -1.27 9.88 22.51 0.22 -1.05 16 23 C -0.16 -2.24 10.03 22.16 0.22 -2.02 16 24 C 0.13 2.29 11.15 85.10 0.95 3.24 16 25 N -0.50 -13.36 10.34 -188.65 -1.95 -15.31 16 26 C 0.09 2.79 6.60 40.25 0.27 3.06 16 27 C -0.04 -1.29 9.56 22.85 0.22 -1.07 16 28 C 0.11 3.14 3.46 86.73 0.30 3.44 16 29 H 0.07 1.50 7.46 -2.39 -0.02 1.48 16 30 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.04 1.40 7.11 -2.38 -0.02 1.39 16 32 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.02 0.76 8.13 -2.39 -0.02 0.74 16 34 H 0.38 17.83 6.37 -92.71 -0.59 17.24 16 35 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 36 H 0.08 1.71 8.04 -2.39 -0.02 1.69 16 37 H 0.11 1.82 8.04 -2.38 -0.02 1.80 16 38 H 0.08 1.74 7.73 -2.39 -0.02 1.73 16 39 H 0.08 1.89 7.99 -2.39 -0.02 1.87 16 40 H 0.17 5.22 2.65 -11.74 -0.03 5.19 16 41 H 0.15 3.83 8.06 -2.91 -0.02 3.80 16 42 H 0.17 2.30 8.06 -2.91 -0.02 2.27 16 43 H 0.18 1.05 8.06 -2.91 -0.02 1.03 16 44 H 0.20 1.83 8.06 -2.91 -0.02 1.80 16 45 H 0.14 4.47 7.62 -2.91 -0.02 4.45 16 46 H 0.08 2.43 6.41 -2.39 -0.02 2.41 16 47 H 0.08 2.35 6.42 -2.39 -0.02 2.34 16 Total: -1.00 -69.12 378.33 2.23 -66.89 By element: Atomic # 1 Polarization: 33.66 SS G_CDS: 0.39 Total: 34.05 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: 6.10 Total: -0.06 kcal Atomic # 7 Polarization: -118.35 SS G_CDS: -6.22 Total: -124.57 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.06 Total: -22.04 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -69.12 2.23 -66.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699851761.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.150 kcal (2) G-P(sol) polarization free energy of solvation -69.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds