Wall clock time and date at job start Tue Mar 31 2020 22:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39309 * 119.06275 * 2 1 4 4 C 1.38856 * 119.58148 * 180.02562 * 3 2 1 5 5 C 1.47912 * 121.10988 * 179.97438 * 4 3 2 6 6 O 1.21545 * 119.99598 * 185.83578 * 5 4 3 7 7 N 1.34770 * 120.00155 * 5.83893 * 5 4 3 8 8 C 1.46500 * 119.99974 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47106 * 174.96460 * 8 7 5 10 10 N 1.46500 * 112.85362 * 310.93204 * 9 8 7 11 11 C 1.36941 * 119.99699 * 293.79253 * 10 9 8 12 12 H 1.07995 * 120.00450 * 354.70257 * 11 10 9 13 13 C 1.38815 * 119.99742 * 174.70156 * 11 10 9 14 14 N 1.31623 * 120.00115 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99861 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46760 * 60.00330 * 15 13 11 17 17 H 1.48503 * 109.46750 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47120 * 299.99995 * 15 13 11 19 19 C 1.53786 * 113.69071 * 82.20426 * 9 8 7 20 20 C 1.53779 * 87.08114 * 139.98862 * 19 9 8 21 21 C 1.53777 * 87.08296 * 334.56822 * 20 19 9 22 22 C 1.41826 * 117.77914 * 0.27471 * 4 3 2 23 23 C 1.40091 * 121.37261 * 179.68233 * 22 4 3 24 24 C 1.36246 * 119.64177 * 180.02562 * 23 22 4 25 25 C 1.39354 * 120.83802 * 359.97438 * 24 23 22 26 26 C 1.36070 * 121.04433 * 359.41546 * 25 24 23 27 27 C 1.40706 * 119.73737 * 0.88825 * 26 25 24 28 28 N 1.30976 * 119.05653 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47068 * 89.99955 * 1 2 3 30 30 H 1.08996 * 109.47385 * 210.00108 * 1 2 3 31 31 H 1.09003 * 109.47109 * 330.00134 * 1 2 3 32 32 H 1.08005 * 120.20792 * 0.02562 * 3 2 1 33 33 H 0.96995 * 120.00097 * 359.97438 * 7 5 4 34 34 H 1.08998 * 109.47275 * 54.96185 * 8 7 5 35 35 H 1.09002 * 109.47142 * 294.96472 * 8 7 5 36 36 H 0.97000 * 119.99948 * 113.51171 * 10 9 8 37 37 H 0.96993 * 119.99654 * 179.97438 * 14 13 11 38 38 H 1.09001 * 113.60884 * 254.53998 * 19 9 8 39 39 H 1.08992 * 113.61153 * 25.44003 * 19 9 8 40 40 H 1.08997 * 113.61573 * 220.01415 * 20 19 9 41 41 H 1.09006 * 113.61174 * 89.11415 * 20 19 9 42 42 H 1.09005 * 113.61038 * 270.88329 * 21 20 19 43 43 H 1.09001 * 113.61486 * 139.98125 * 21 20 19 44 44 H 1.08001 * 120.18208 * 0.06359 * 23 22 4 45 45 H 1.08001 * 119.58604 * 179.97438 * 24 23 22 46 46 H 1.07995 * 119.47571 * 180.02562 * 25 24 23 47 47 H 1.08003 * 120.12843 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1837 1.2177 0.0000 4 6 3.5722 1.2303 -0.0005 5 6 4.3250 2.5035 -0.0011 6 8 5.5356 2.4936 -0.1086 7 7 3.6685 3.6745 0.1176 8 6 4.4141 4.9355 0.1176 9 6 3.4322 6.1086 0.1378 10 7 2.3765 5.9844 -0.8704 11 6 2.6911 6.0425 -2.2019 12 1 3.7024 6.2650 -2.5086 13 6 1.7101 5.8153 -3.1574 14 7 0.4777 5.5436 -2.7836 15 14 2.1391 5.8952 -4.9737 16 1 3.1807 4.8826 -5.2812 17 1 0.9244 5.6179 -5.7818 18 1 2.6528 7.2493 -5.3019 19 6 2.9059 6.4499 1.5420 20 6 3.0366 7.9299 1.1455 21 6 4.1173 7.4854 0.1458 22 6 4.2446 -0.0185 -0.0071 23 6 5.6434 -0.0936 -0.0147 24 6 6.2528 -1.3122 -0.0214 25 6 5.5021 -2.4863 -0.0202 26 6 4.1420 -2.4495 -0.0005 27 6 3.4773 -1.2094 0.0002 28 7 2.1431 -1.1449 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6318 2.1461 0.0004 33 1 2.7023 3.6824 0.2031 34 1 5.0306 4.9931 -0.7795 35 1 5.0521 4.9805 1.0003 36 1 1.4552 5.8569 -0.5948 37 1 -0.2078 5.3852 -3.4512 38 1 1.8771 6.1324 1.7116 39 1 3.5799 6.1518 2.3450 40 1 3.4168 8.5645 1.9460 41 1 2.1430 8.3353 0.6709 42 1 5.1224 7.4705 0.5674 43 1 4.0663 8.0040 -0.8115 44 1 6.2357 0.8095 -0.0147 45 1 7.3313 -1.3691 -0.0277 46 1 6.0079 -3.4404 -0.0252 47 1 3.5749 -3.3687 0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700141091.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:04 Heat of formation + Delta-G solvation = 37.587020 kcal Electronic energy + Delta-G solvation = -29373.548338 eV Core-core repulsion = 25521.410462 eV Total energy + Delta-G solvation = -3852.137876 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.21117 -40.77566 -39.77356 -38.38073 -35.56628 -35.17522 -34.49817 -32.98654 -31.93044 -31.15525 -29.03722 -28.52359 -26.70477 -25.92729 -25.41482 -24.12700 -23.47985 -22.79247 -21.56604 -19.75316 -19.11542 -19.01843 -18.56899 -18.41081 -17.07665 -16.60929 -16.48341 -16.38651 -16.00853 -15.83907 -15.67646 -15.46844 -15.34790 -15.07321 -14.60322 -14.30967 -14.22335 -14.02891 -13.93173 -13.74825 -13.10589 -13.06004 -12.99791 -12.91792 -12.61149 -12.51086 -12.34908 -12.32486 -12.21260 -11.93488 -11.63903 -11.57813 -11.48164 -11.40147 -10.93004 -10.80095 -10.35404 -10.07374 -9.72842 -9.26555 -8.99548 -7.93996 -5.20031 -0.98391 -0.27037 0.66134 1.43132 1.45363 1.49151 1.67439 2.02096 2.11151 2.53533 3.03902 3.12925 3.35412 3.41635 3.57833 3.66283 3.75343 3.79868 3.82689 3.96465 4.07300 4.14328 4.17576 4.22179 4.38761 4.40235 4.46986 4.60630 4.71377 4.77875 4.81092 4.84510 4.88387 4.92451 4.98670 5.00859 5.07409 5.14683 5.18113 5.30944 5.35982 5.38780 5.44541 5.50258 5.55925 5.64838 5.71171 5.88842 6.30125 6.45799 6.77364 7.08268 7.37601 8.08974 8.34140 9.27619 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010355 B = 0.003696 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.249490 B = 7573.696737 C = 8369.481394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.147 3.853 3 C -0.128 4.128 4 C -0.086 4.086 5 C 0.552 3.448 6 O -0.565 6.565 7 N -0.682 5.682 8 C 0.126 3.874 9 C 0.157 3.843 10 N -0.702 5.702 11 C -0.221 4.221 12 H 0.062 0.938 13 C -0.056 4.056 14 N -0.954 5.954 15 Si 0.947 3.053 16 H -0.293 1.293 17 H -0.295 1.295 18 H -0.281 1.281 19 C -0.128 4.128 20 C -0.120 4.120 21 C -0.149 4.149 22 C -0.092 4.092 23 C -0.126 4.126 24 C -0.114 4.114 25 C -0.088 4.088 26 C -0.108 4.108 27 C 0.106 3.894 28 N -0.474 5.474 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.154 0.846 33 H 0.407 0.593 34 H 0.038 0.962 35 H 0.079 0.921 36 H 0.379 0.621 37 H 0.250 0.750 38 H 0.066 0.934 39 H 0.105 0.895 40 H 0.085 0.915 41 H 0.061 0.939 42 H 0.094 0.906 43 H 0.047 0.953 44 H 0.150 0.850 45 H 0.155 0.845 46 H 0.170 0.830 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.061 -10.890 11.567 16.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.005 4.005 3 C -0.149 4.149 4 C -0.097 4.097 5 C 0.339 3.661 6 O -0.447 6.447 7 N -0.331 5.331 8 C 0.000 4.000 9 C 0.066 3.934 10 N -0.342 5.342 11 C -0.353 4.353 12 H 0.080 0.920 13 C -0.249 4.249 14 N -0.604 5.604 15 Si 0.778 3.222 16 H -0.221 1.221 17 H -0.221 1.221 18 H -0.208 1.208 19 C -0.166 4.166 20 C -0.158 4.158 21 C -0.189 4.189 22 C -0.095 4.095 23 C -0.144 4.144 24 C -0.131 4.131 25 C -0.107 4.107 26 C -0.126 4.126 27 C -0.015 4.015 28 N -0.184 5.184 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.115 0.885 32 H 0.171 0.829 33 H 0.244 0.756 34 H 0.057 0.943 35 H 0.097 0.903 36 H 0.213 0.787 37 H 0.059 0.941 38 H 0.085 0.915 39 H 0.123 0.877 40 H 0.103 0.897 41 H 0.080 0.920 42 H 0.113 0.887 43 H 0.065 0.935 44 H 0.167 0.833 45 H 0.173 0.827 46 H 0.187 0.813 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 5.579 -11.657 11.323 17.182 hybrid contribution -0.241 1.113 -1.569 1.939 sum 5.338 -10.544 9.754 15.324 Atomic orbital electron populations 1.20888 0.85661 1.05138 1.04321 1.21913 0.98877 0.87048 0.92656 1.22532 0.93194 1.00933 0.98244 1.20450 0.94409 0.93253 1.01543 1.18256 0.86904 0.84075 0.76830 1.90523 1.14647 1.87160 1.52393 1.45641 1.11600 1.05064 1.70792 1.21847 0.94675 0.82991 1.00480 1.21151 0.89827 0.91830 0.90605 1.42058 1.04915 1.86430 1.00819 1.19171 0.94372 1.37961 0.83833 0.92010 1.25163 0.95975 1.03558 1.00251 1.69714 1.01275 1.56479 1.32977 0.85621 0.76193 0.77618 0.82744 1.22060 1.22090 1.20789 1.23171 1.01785 0.96587 0.95067 1.22549 0.98476 0.96248 0.98498 1.23316 0.98831 0.97182 0.99532 1.18888 0.95875 0.92336 1.02372 1.22017 0.93185 1.01192 0.97982 1.21443 1.01973 0.91563 0.98167 1.21384 0.93144 0.99981 0.96213 1.21077 0.95147 0.95607 1.00811 1.19255 0.89090 0.93737 0.99447 1.67703 1.08879 1.29202 1.12601 0.89480 0.89095 0.88527 0.82875 0.75567 0.94327 0.90273 0.78688 0.94113 0.91476 0.87660 0.89684 0.92036 0.88725 0.93450 0.83265 0.82740 0.81263 0.82815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.13 10.14 71.24 0.72 -1.41 16 2 C 0.15 4.18 6.78 42.94 0.29 4.47 16 3 C -0.13 -3.91 9.20 22.68 0.21 -3.70 16 4 C -0.09 -2.95 5.94 -19.68 -0.12 -3.06 16 5 C 0.55 20.49 7.75 86.81 0.67 21.16 16 6 O -0.57 -23.06 13.52 -3.86 -0.05 -23.11 16 7 N -0.68 -23.75 5.34 -465.92 -2.49 -26.24 16 8 C 0.13 4.35 5.03 86.38 0.43 4.79 16 9 C 0.16 5.34 0.90 4.13 0.00 5.34 16 10 N -0.70 -30.47 4.59 -300.96 -1.38 -31.86 16 11 C -0.22 -11.29 9.25 84.03 0.78 -10.52 16 12 H 0.06 3.21 7.83 -2.91 -0.02 3.19 16 13 C -0.06 -3.02 5.50 84.86 0.47 -2.55 16 14 N -0.95 -53.46 13.06 21.65 0.28 -53.18 16 15 Si 0.95 45.42 29.55 68.60 2.03 47.44 16 16 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 17 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 18 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 19 C -0.13 -3.40 7.37 31.12 0.23 -3.17 16 20 C -0.12 -3.28 7.99 31.12 0.25 -3.03 16 21 C -0.15 -4.63 7.28 31.12 0.23 -4.41 16 22 C -0.09 -3.06 5.76 -21.09 -0.12 -3.19 16 23 C -0.13 -3.85 9.25 22.26 0.21 -3.65 16 24 C -0.11 -2.56 9.96 22.07 0.22 -2.34 16 25 C -0.09 -1.67 9.94 22.03 0.22 -1.45 16 26 C -0.11 -2.52 9.98 22.37 0.22 -2.30 16 27 C 0.11 3.24 6.61 40.33 0.27 3.50 16 28 N -0.47 -14.33 10.19 -176.84 -1.80 -16.13 16 29 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.10 1.69 8.07 -2.39 -0.02 1.67 16 32 H 0.15 4.32 6.55 -2.91 -0.02 4.30 16 33 H 0.41 13.64 6.30 -92.71 -0.58 13.06 16 34 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.08 2.39 7.95 -2.39 -0.02 2.37 16 36 H 0.38 17.51 7.87 -92.71 -0.73 16.78 16 37 H 0.25 13.91 8.31 -92.71 -0.77 13.13 16 38 H 0.07 1.79 8.09 -2.39 -0.02 1.78 16 39 H 0.11 2.27 7.97 -2.39 -0.02 2.25 16 40 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 42 H 0.09 2.47 8.10 -2.38 -0.02 2.45 16 43 H 0.05 1.74 7.83 -2.39 -0.02 1.72 16 44 H 0.15 5.13 4.98 -2.91 -0.01 5.12 16 45 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 46 H 0.17 1.78 8.06 -2.91 -0.02 1.75 16 47 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -66.02 386.96 1.46 -64.56 By element: Atomic # 1 Polarization: 44.33 SS G_CDS: -0.30 Total: 44.03 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: 5.18 Total: -5.51 kcal Atomic # 7 Polarization: -122.02 SS G_CDS: -5.39 Total: -127.41 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.05 Total: -23.11 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -66.02 1.46 -64.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700141091.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.145 kcal (2) G-P(sol) polarization free energy of solvation -66.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds