Wall clock time and date at job start Tue Mar 31 2020 22:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36612 * 120.92254 * 2 1 4 4 C 1.39275 * 119.90538 * 179.97438 * 3 2 1 5 5 N 1.31142 * 121.77044 * 0.02562 * 4 3 2 6 6 C 1.33618 * 121.39347 * 359.97438 * 5 4 3 7 7 C 1.40767 * 120.83600 * 179.97438 * 6 5 4 8 8 C 1.35694 * 120.11066 * 180.02562 * 7 6 5 9 9 C 1.40640 * 120.92683 * 0.04309 * 8 7 6 10 10 C 1.47766 * 119.79927 * 179.97438 * 9 8 7 11 11 O 1.21571 * 119.99683 * 180.02562 * 10 9 8 12 12 N 1.34775 * 120.00462 * 0.02562 * 10 9 8 13 13 C 1.46504 * 120.00197 * 180.02562 * 12 10 9 14 14 C 1.53781 * 113.61521 * 254.14131 * 13 12 10 15 15 C 1.54054 * 86.98671 * 270.83987 * 14 13 12 16 16 C 1.52994 * 113.61835 * 220.02594 * 15 14 13 17 17 N 1.46504 * 109.46913 * 272.48883 * 16 15 14 18 18 C 1.36935 * 120.00224 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00046 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00266 * 180.02562 * 18 17 16 21 21 N 1.31620 * 120.00078 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00137 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47072 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47199 * 119.99923 * 22 20 18 25 25 H 1.48510 * 109.46987 * 239.99787 * 22 20 18 26 26 C 1.53774 * 113.61443 * 156.53183 * 13 12 10 27 27 C 1.38542 * 120.39406 * 359.97276 * 9 8 7 28 28 C 1.40189 * 119.40256 * 0.02562 * 27 9 8 29 29 H 1.08997 * 109.47132 * 89.99840 * 1 2 3 30 30 H 1.08994 * 109.47771 * 210.00257 * 1 2 3 31 31 H 1.09009 * 109.47266 * 330.00451 * 1 2 3 32 32 H 1.07998 * 120.04956 * 359.95700 * 3 2 1 33 33 H 1.08002 * 119.11403 * 179.71723 * 4 3 2 34 34 H 1.08006 * 119.94727 * 0.04604 * 7 6 5 35 35 H 1.07999 * 119.53942 * 180.02562 * 8 7 6 36 36 H 0.97000 * 119.99887 * 0.02562 * 12 10 9 37 37 H 1.08997 * 112.84837 * 25.33526 * 13 12 10 38 38 H 1.09006 * 113.61081 * 25.43028 * 14 13 12 39 39 H 1.08994 * 113.61524 * 156.33339 * 14 13 12 40 40 H 1.08991 * 113.69211 * 89.12074 * 15 14 13 41 41 H 1.09002 * 109.47677 * 32.48764 * 16 15 14 42 42 H 1.09001 * 109.47179 * 152.49257 * 16 15 14 43 43 H 0.97003 * 120.00091 * 0.02562 * 17 16 15 44 44 H 0.96998 * 120.00306 * 180.02562 * 21 20 18 45 45 H 1.09003 * 113.61603 * 203.66327 * 26 13 12 46 46 H 1.09006 * 113.61559 * 334.56967 * 26 13 12 47 47 H 1.07998 * 120.29419 * 180.02562 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1719 0.0000 4 6 3.6015 1.1472 0.0005 5 7 4.2721 0.0202 0.0006 6 6 3.6478 -1.1612 0.0006 7 6 4.3794 -2.3638 0.0000 8 6 3.7302 -3.5554 -0.0005 9 6 2.3250 -3.6131 -0.0014 10 6 1.6438 -4.9243 -0.0025 11 8 0.4293 -4.9783 -0.0038 12 7 2.3689 -6.0605 -0.0021 13 6 1.6934 -7.3605 -0.0038 14 6 1.7492 -8.0854 1.3513 15 6 3.0716 -8.7120 0.8698 16 6 3.2287 -10.1841 1.2557 17 7 3.8328 -10.2781 2.5871 18 6 4.0719 -11.5054 3.1454 19 1 3.8147 -12.4041 2.6045 20 6 4.6438 -11.5945 4.4071 21 7 4.9568 -10.4993 5.0666 22 14 4.9706 -13.2687 5.1684 23 1 4.5320 -14.3331 4.2304 24 1 6.4235 -13.4144 5.4388 25 1 4.2156 -13.3894 6.4415 26 6 2.5571 -8.5027 -0.5643 27 6 1.5757 -2.4478 -0.0012 28 6 2.2307 -1.2083 -0.0007 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8901 0.5138 32 1 1.6849 2.1163 -0.0007 33 1 4.1437 2.0813 -0.0041 34 1 5.4591 -2.3381 0.0004 35 1 4.3007 -4.4725 -0.0004 36 1 3.3379 -6.0174 -0.0007 37 1 0.6933 -7.3173 -0.4350 38 1 1.8669 -7.4134 2.2014 39 1 0.9479 -8.8109 1.4917 40 1 3.9517 -8.1154 1.1093 41 1 2.2498 -10.6635 1.2663 42 1 3.8701 -10.6837 0.5296 43 1 4.0635 -9.4710 3.0731 44 1 5.3567 -10.5614 5.9481 45 1 1.9763 -9.3421 -0.9467 46 1 3.3267 -8.1674 -1.2597 47 1 0.4967 -2.4939 -0.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700373831.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:41 Heat of formation + Delta-G solvation = 46.673426 kcal Electronic energy + Delta-G solvation = -27580.302178 eV Core-core repulsion = 23728.558319 eV Total energy + Delta-G solvation = -3851.743860 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.40067 -40.24016 -38.53036 -36.95851 -35.13165 -34.56427 -33.27957 -31.23258 -30.75596 -30.62307 -28.34792 -26.90835 -25.51922 -25.04663 -24.02240 -23.30322 -21.76663 -21.38631 -21.27110 -19.17031 -18.72964 -18.08135 -17.10029 -16.94636 -16.25945 -15.94078 -15.28045 -14.95222 -14.84309 -14.68675 -14.64813 -14.42264 -14.03181 -13.95444 -13.79334 -13.51955 -13.32868 -13.22736 -12.93397 -12.80184 -12.38770 -12.16620 -12.10814 -12.00194 -11.80915 -11.61852 -11.03699 -10.84131 -10.60943 -10.50295 -10.34399 -10.11918 -10.07862 -9.89298 -9.82738 -9.61389 -9.26003 -9.04245 -8.84332 -8.59374 -6.89180 -5.75085 -3.03244 -0.16327 0.28081 1.50701 2.09187 2.93610 3.06369 3.44022 3.49535 3.51895 3.72681 3.85255 4.06366 4.17858 4.32128 4.41204 4.58518 4.60393 4.64434 4.67694 4.80902 4.81941 4.94160 5.03623 5.07678 5.10027 5.13056 5.25497 5.46957 5.52469 5.58107 5.59226 5.62996 5.71141 5.83910 5.86770 5.92805 5.93394 6.00231 6.09901 6.10915 6.22851 6.29525 6.36245 6.42130 6.61261 6.78769 6.93484 7.35962 7.50028 7.71763 8.04023 8.44129 9.55145 10.14392 10.48677 11.47947 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017489 B = 0.001936 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.607536 B =14456.907737 C =15252.651901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.011 4.011 3 C -0.187 4.187 4 C 0.144 3.856 5 N -0.482 5.482 6 C 0.147 3.853 7 C -0.096 4.096 8 C -0.074 4.074 9 C -0.133 4.133 10 C 0.561 3.439 11 O -0.537 6.537 12 N -0.702 5.702 13 C 0.115 3.885 14 C -0.138 4.138 15 C -0.114 4.114 16 C 0.162 3.838 17 N -0.732 5.732 18 C -0.238 4.238 19 H 0.070 0.930 20 C -0.016 4.016 21 N -0.934 5.934 22 Si 0.906 3.094 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.138 4.138 27 C -0.026 4.026 28 C -0.114 4.114 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.139 0.861 33 H 0.161 0.839 34 H 0.143 0.857 35 H 0.135 0.865 36 H 0.401 0.599 37 H 0.100 0.900 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.020 0.980 42 H 0.018 0.982 43 H 0.383 0.617 44 H 0.254 0.746 45 H 0.096 0.904 46 H 0.069 0.931 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.612 25.013 -15.106 29.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.019 4.019 3 C -0.207 4.207 4 C -0.028 4.028 5 N -0.191 5.191 6 C 0.026 3.974 7 C -0.115 4.115 8 C -0.094 4.094 9 C -0.136 4.136 10 C 0.348 3.652 11 O -0.416 6.416 12 N -0.353 5.353 13 C 0.010 3.990 14 C -0.177 4.177 15 C -0.132 4.132 16 C 0.035 3.965 17 N -0.376 5.376 18 C -0.369 4.369 19 H 0.088 0.912 20 C -0.212 4.212 21 N -0.583 5.583 22 Si 0.738 3.262 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.176 4.176 27 C -0.046 4.046 28 C -0.116 4.116 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.157 0.843 33 H 0.178 0.822 34 H 0.161 0.839 35 H 0.153 0.847 36 H 0.237 0.763 37 H 0.118 0.882 38 H 0.088 0.912 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.038 0.962 42 H 0.036 0.964 43 H 0.217 0.783 44 H 0.064 0.936 45 H 0.114 0.886 46 H 0.088 0.912 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.547 24.649 -15.093 29.635 hybrid contribution 0.036 -0.593 0.784 0.984 sum -6.511 24.056 -14.308 28.737 Atomic orbital electron populations 1.20959 0.89651 1.04101 1.03530 1.20266 0.96869 0.91986 0.92785 1.21783 0.95635 0.98845 1.04424 1.23022 0.91535 0.96514 0.91692 1.68085 1.39885 0.97704 1.13388 1.19012 0.89540 0.92640 0.96240 1.20703 1.00767 0.89691 1.00299 1.20989 0.92991 0.98614 0.96835 1.19950 0.93801 0.93599 1.06223 1.18141 0.86946 0.83824 0.76255 1.90774 1.13372 1.87466 1.49942 1.45603 1.10183 1.05181 1.74297 1.21979 0.97145 0.81288 0.98553 1.23463 0.98522 0.99286 0.96429 1.22815 0.97366 0.98544 0.94498 1.20639 0.95859 0.91674 0.88373 1.42357 1.73971 1.06142 1.15120 1.19291 1.33300 0.85631 0.98676 0.91175 1.24747 1.02025 0.96999 0.97431 1.69669 1.48751 1.25939 1.13911 0.86119 0.77509 0.83520 0.79071 1.20571 1.21900 1.21902 1.23314 0.99357 0.97629 0.97308 1.21469 1.00776 0.89682 0.92681 1.18671 0.94120 0.93958 1.04840 0.89803 0.90266 0.90345 0.84308 0.82172 0.83918 0.84687 0.76269 0.88185 0.91249 0.89014 0.89429 0.96187 0.96386 0.78342 0.93610 0.88573 0.91203 0.83556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.68 9.59 36.00 0.35 -0.33 16 2 C -0.01 -0.09 5.92 -104.22 -0.62 -0.70 16 3 C -0.19 -1.22 9.72 -39.78 -0.39 -1.60 16 4 C 0.14 1.09 11.14 -17.46 -0.19 0.89 16 5 N -0.48 -5.04 10.33 -10.92 -0.11 -5.16 16 6 C 0.15 1.59 6.61 -84.78 -0.56 1.03 16 7 C -0.10 -0.93 9.95 -39.54 -0.39 -1.32 16 8 C -0.07 -0.68 9.44 -39.59 -0.37 -1.06 16 9 C -0.13 -1.45 5.87 -104.98 -0.62 -2.07 16 10 C 0.56 7.20 7.77 -12.37 -0.10 7.10 16 11 O -0.54 -8.55 15.93 5.30 0.08 -8.46 16 12 N -0.70 -8.01 5.21 -53.99 -0.28 -8.29 16 13 C 0.12 1.44 4.29 -67.12 -0.29 1.15 16 14 C -0.14 -2.04 7.45 -25.77 -0.19 -2.24 16 15 C -0.11 -1.72 3.65 -89.66 -0.33 -2.05 16 16 C 0.16 3.20 6.10 -4.04 -0.02 3.17 16 17 N -0.73 -18.58 5.60 -59.91 -0.34 -18.92 16 18 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 19 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 20 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 21 N -0.93 -28.52 13.06 55.49 0.72 -27.79 16 22 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 C -0.14 -1.61 7.38 -25.92 -0.19 -1.80 16 27 C -0.03 -0.28 8.88 -38.74 -0.34 -0.62 16 28 C -0.11 -1.14 5.74 -106.82 -0.61 -1.76 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.46 6.52 -51.93 -0.34 0.12 16 31 H 0.08 0.29 8.10 -51.92 -0.42 -0.13 16 32 H 0.14 0.49 8.06 -52.49 -0.42 0.06 16 33 H 0.16 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.14 1.17 8.06 -52.48 -0.42 0.74 16 35 H 0.14 0.94 6.35 -52.49 -0.33 0.61 16 36 H 0.40 3.73 6.69 -40.82 -0.27 3.45 16 37 H 0.10 1.31 7.50 -51.93 -0.39 0.92 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.09 1.38 7.90 -51.93 -0.41 0.97 16 40 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.02 0.40 7.85 -51.93 -0.41 0.00 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.38 10.23 7.67 -40.82 -0.31 9.92 16 44 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 45 H 0.10 1.06 8.10 -51.93 -0.42 0.64 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.15 1.44 6.00 -52.49 -0.31 1.12 16 LS Contribution 389.69 15.07 5.87 5.87 Total: -1.00 -35.08 389.69 -10.74 -45.82 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -6.55 Total: 8.99 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -5.12 Total: -9.65 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: -0.01 Total: -60.16 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.08 Total: -8.46 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.08 -10.74 -45.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700373831.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.493 kcal (2) G-P(sol) polarization free energy of solvation -35.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds