Wall clock time and date at job start Tue Mar 31 2020 22:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36612 * 120.92254 * 2 1 4 4 C 1.39275 * 119.90538 * 179.97438 * 3 2 1 5 5 N 1.31142 * 121.77044 * 0.02562 * 4 3 2 6 6 C 1.33618 * 121.39347 * 359.97438 * 5 4 3 7 7 C 1.40767 * 120.83600 * 179.97438 * 6 5 4 8 8 C 1.35694 * 120.11066 * 180.02562 * 7 6 5 9 9 C 1.40640 * 120.92683 * 0.04309 * 8 7 6 10 10 C 1.47766 * 119.79927 * 179.97438 * 9 8 7 11 11 O 1.21571 * 119.99683 * 180.02562 * 10 9 8 12 12 N 1.34775 * 120.00462 * 0.02562 * 10 9 8 13 13 C 1.46504 * 120.00197 * 180.02562 * 12 10 9 14 14 C 1.53781 * 113.61521 * 254.14131 * 13 12 10 15 15 C 1.54054 * 86.98671 * 270.83987 * 14 13 12 16 16 C 1.52994 * 113.61835 * 220.02594 * 15 14 13 17 17 N 1.46504 * 109.46913 * 272.48883 * 16 15 14 18 18 C 1.36935 * 120.00224 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00046 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00266 * 180.02562 * 18 17 16 21 21 N 1.31620 * 120.00078 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00137 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47072 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47199 * 119.99923 * 22 20 18 25 25 H 1.48510 * 109.46987 * 239.99787 * 22 20 18 26 26 C 1.53774 * 113.61443 * 156.53183 * 13 12 10 27 27 C 1.38542 * 120.39406 * 359.97276 * 9 8 7 28 28 C 1.40189 * 119.40256 * 0.02562 * 27 9 8 29 29 H 1.08997 * 109.47132 * 89.99840 * 1 2 3 30 30 H 1.08994 * 109.47771 * 210.00257 * 1 2 3 31 31 H 1.09009 * 109.47266 * 330.00451 * 1 2 3 32 32 H 1.07998 * 120.04956 * 359.95700 * 3 2 1 33 33 H 1.08002 * 119.11403 * 179.71723 * 4 3 2 34 34 H 1.08006 * 119.94727 * 0.04604 * 7 6 5 35 35 H 1.07999 * 119.53942 * 180.02562 * 8 7 6 36 36 H 0.97000 * 119.99887 * 0.02562 * 12 10 9 37 37 H 1.08997 * 112.84837 * 25.33526 * 13 12 10 38 38 H 1.09006 * 113.61081 * 25.43028 * 14 13 12 39 39 H 1.08994 * 113.61524 * 156.33339 * 14 13 12 40 40 H 1.08991 * 113.69211 * 89.12074 * 15 14 13 41 41 H 1.09002 * 109.47677 * 32.48764 * 16 15 14 42 42 H 1.09001 * 109.47179 * 152.49257 * 16 15 14 43 43 H 0.97003 * 120.00091 * 0.02562 * 17 16 15 44 44 H 0.96998 * 120.00306 * 180.02562 * 21 20 18 45 45 H 1.09003 * 113.61603 * 203.66327 * 26 13 12 46 46 H 1.09006 * 113.61559 * 334.56967 * 26 13 12 47 47 H 1.07998 * 120.29419 * 180.02562 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1719 0.0000 4 6 3.6015 1.1472 0.0005 5 7 4.2721 0.0202 0.0006 6 6 3.6478 -1.1612 0.0006 7 6 4.3794 -2.3638 0.0000 8 6 3.7302 -3.5554 -0.0005 9 6 2.3250 -3.6131 -0.0014 10 6 1.6438 -4.9243 -0.0025 11 8 0.4293 -4.9783 -0.0038 12 7 2.3689 -6.0605 -0.0021 13 6 1.6934 -7.3605 -0.0038 14 6 1.7492 -8.0854 1.3513 15 6 3.0716 -8.7120 0.8698 16 6 3.2287 -10.1841 1.2557 17 7 3.8328 -10.2781 2.5871 18 6 4.0719 -11.5054 3.1454 19 1 3.8147 -12.4041 2.6045 20 6 4.6438 -11.5945 4.4071 21 7 4.9568 -10.4993 5.0666 22 14 4.9706 -13.2687 5.1684 23 1 4.5320 -14.3331 4.2304 24 1 6.4235 -13.4144 5.4388 25 1 4.2156 -13.3894 6.4415 26 6 2.5571 -8.5027 -0.5643 27 6 1.5757 -2.4478 -0.0012 28 6 2.2307 -1.2083 -0.0007 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8901 0.5138 32 1 1.6849 2.1163 -0.0007 33 1 4.1437 2.0813 -0.0041 34 1 5.4591 -2.3381 0.0004 35 1 4.3007 -4.4725 -0.0004 36 1 3.3379 -6.0174 -0.0007 37 1 0.6933 -7.3173 -0.4350 38 1 1.8669 -7.4134 2.2014 39 1 0.9479 -8.8109 1.4917 40 1 3.9517 -8.1154 1.1093 41 1 2.2498 -10.6635 1.2663 42 1 3.8701 -10.6837 0.5296 43 1 4.0635 -9.4710 3.0731 44 1 5.3567 -10.5614 5.9481 45 1 1.9763 -9.3421 -0.9467 46 1 3.3267 -8.1674 -1.2597 47 1 0.4967 -2.4939 -0.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700373831.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:40 Heat of formation + Delta-G solvation = 24.390958 kcal Electronic energy + Delta-G solvation = -27581.268419 eV Core-core repulsion = 23728.558319 eV Total energy + Delta-G solvation = -3852.710100 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.10933 -41.22654 -39.61153 -37.73983 -36.36113 -35.71498 -34.54903 -32.87538 -31.66271 -31.43686 -28.94657 -28.44994 -26.63115 -26.02688 -25.01565 -24.64404 -23.02143 -22.44171 -22.00750 -20.36688 -19.55354 -19.06944 -18.78766 -17.73552 -16.99206 -16.95893 -16.64752 -16.22600 -15.90157 -15.72378 -15.49620 -15.36181 -15.19124 -15.05372 -14.95001 -14.57323 -14.44581 -13.99666 -13.82800 -13.68574 -13.46740 -13.39740 -13.12840 -12.94236 -12.77998 -12.74276 -12.64787 -12.41468 -12.12746 -11.93373 -11.75064 -11.36819 -11.22352 -11.18310 -11.12778 -10.86211 -10.53366 -10.16736 -9.85562 -9.29956 -8.97465 -7.95228 -5.23313 -0.86250 -0.38712 0.80799 1.33710 1.46723 1.47564 1.57734 1.99763 2.22448 2.55915 3.02254 3.24205 3.37871 3.45120 3.53983 3.57148 3.60331 3.64411 3.77731 3.92235 3.94725 3.96199 3.99600 4.22892 4.34037 4.43966 4.48984 4.55890 4.69825 4.72540 4.75031 4.82951 4.85686 4.86927 4.90525 4.93815 4.99034 5.00154 5.12213 5.13927 5.15775 5.26839 5.30106 5.35802 5.47925 5.49932 5.65752 5.73344 6.27821 6.43048 6.86800 7.07960 7.33608 8.12055 8.33953 9.28598 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017489 B = 0.001936 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.607536 B =14456.907737 C =15252.651901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.021 4.021 3 C -0.180 4.180 4 C 0.144 3.856 5 N -0.514 5.514 6 C 0.128 3.872 7 C -0.105 4.105 8 C -0.072 4.072 9 C -0.150 4.150 10 C 0.561 3.439 11 O -0.574 6.574 12 N -0.694 5.694 13 C 0.125 3.875 14 C -0.143 4.143 15 C -0.112 4.112 16 C 0.159 3.841 17 N -0.745 5.745 18 C -0.243 4.243 19 H 0.076 0.924 20 C -0.080 4.080 21 N -0.970 5.970 22 Si 0.973 3.027 23 H -0.265 1.265 24 H -0.293 1.293 25 H -0.295 1.295 26 C -0.115 4.115 27 C -0.028 4.028 28 C -0.131 4.131 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.175 0.825 33 H 0.193 0.807 34 H 0.154 0.846 35 H 0.156 0.844 36 H 0.413 0.587 37 H 0.098 0.902 38 H 0.049 0.951 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.021 0.979 42 H 0.023 0.977 43 H 0.373 0.627 44 H 0.250 0.750 45 H 0.109 0.891 46 H 0.093 0.907 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.676 26.037 -16.473 31.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.029 4.029 3 C -0.200 4.200 4 C -0.027 4.027 5 N -0.223 5.223 6 C 0.007 3.993 7 C -0.124 4.124 8 C -0.092 4.092 9 C -0.153 4.153 10 C 0.350 3.650 11 O -0.455 6.455 12 N -0.345 5.345 13 C 0.020 3.980 14 C -0.182 4.182 15 C -0.131 4.131 16 C 0.033 3.967 17 N -0.388 5.388 18 C -0.375 4.375 19 H 0.094 0.906 20 C -0.272 4.272 21 N -0.622 5.622 22 Si 0.803 3.197 23 H -0.190 1.190 24 H -0.220 1.220 25 H -0.222 1.222 26 C -0.153 4.153 27 C -0.048 4.048 28 C -0.133 4.133 29 H 0.112 0.888 30 H 0.088 0.912 31 H 0.118 0.882 32 H 0.193 0.807 33 H 0.210 0.790 34 H 0.171 0.829 35 H 0.173 0.827 36 H 0.251 0.749 37 H 0.116 0.884 38 H 0.068 0.932 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.039 0.961 42 H 0.041 0.959 43 H 0.204 0.796 44 H 0.059 0.941 45 H 0.127 0.873 46 H 0.112 0.888 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.605 25.659 -16.507 31.217 hybrid contribution 0.015 -0.770 1.177 1.406 sum -6.590 24.889 -15.330 29.965 Atomic orbital electron populations 1.21016 0.88045 1.04703 1.04309 1.20625 0.98156 0.91689 0.92416 1.22180 0.95345 0.99822 1.02605 1.23691 0.92494 0.96858 0.89663 1.68125 1.40740 0.98312 1.15107 1.19294 0.90092 0.93313 0.96603 1.20898 1.01368 0.89666 1.00447 1.21125 0.92320 0.99427 0.96298 1.19889 0.94569 0.92719 1.08093 1.18426 0.86562 0.84628 0.75364 1.90747 1.14919 1.88006 1.51856 1.45536 1.10762 1.04577 1.73601 1.21819 0.97551 0.81823 0.96819 1.23476 0.98287 0.99311 0.97135 1.22745 0.97472 0.95471 0.97361 1.20839 0.95176 0.94858 0.85826 1.42597 1.74268 1.04893 1.17013 1.19708 1.32074 0.86896 0.98819 0.90631 1.25589 1.02783 1.00559 0.98248 1.69824 1.50199 1.28038 1.14102 0.85067 0.76946 0.79704 0.78019 1.18956 1.21970 1.22194 1.23230 0.99391 0.97373 0.95334 1.21568 1.00858 0.90028 0.92310 1.18854 0.94241 0.94640 1.05607 0.88831 0.91175 0.88226 0.80748 0.79006 0.82873 0.82674 0.74919 0.88402 0.93178 0.89470 0.89593 0.96127 0.95914 0.79583 0.94083 0.87284 0.88813 0.83595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 9.59 71.23 0.68 -0.47 16 2 C -0.02 -0.30 5.92 -19.61 -0.12 -0.42 16 3 C -0.18 -1.89 9.72 22.14 0.22 -1.68 16 4 C 0.14 1.88 11.14 85.05 0.95 2.83 16 5 N -0.51 -10.35 10.33 -188.46 -1.95 -12.30 16 6 C 0.13 2.76 6.61 40.37 0.27 3.02 16 7 C -0.11 -2.03 9.95 22.30 0.22 -1.81 16 8 C -0.07 -1.31 9.44 22.27 0.21 -1.10 16 9 C -0.15 -3.32 5.87 -20.10 -0.12 -3.44 16 10 C 0.56 14.52 7.77 86.76 0.67 15.19 16 11 O -0.57 -18.67 15.93 -3.94 -0.06 -18.73 16 12 N -0.69 -15.36 5.21 -442.98 -2.31 -17.67 16 13 C 0.13 3.00 4.29 45.51 0.20 3.19 16 14 C -0.14 -4.24 7.45 31.21 0.23 -4.00 16 15 C -0.11 -3.30 3.65 -10.17 -0.04 -3.34 16 16 C 0.16 6.17 6.10 86.38 0.53 6.70 16 17 N -0.75 -38.09 5.60 -343.45 -1.92 -40.02 16 18 C -0.24 -13.73 9.99 84.03 0.84 -12.90 16 19 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 20 C -0.08 -4.65 5.50 84.86 0.47 -4.19 16 21 N -0.97 -60.23 13.06 21.65 0.28 -59.95 16 22 Si 0.97 46.68 29.55 68.60 2.03 48.71 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 25 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 26 C -0.11 -2.43 7.38 31.12 0.23 -2.20 16 27 C -0.03 -0.60 8.88 22.82 0.20 -0.40 16 28 C -0.13 -2.62 5.74 -21.29 -0.12 -2.75 16 29 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 0.78 6.52 -2.39 -0.02 0.77 16 31 H 0.10 0.49 8.10 -2.38 -0.02 0.47 16 32 H 0.18 0.52 8.06 -2.91 -0.02 0.49 16 33 H 0.19 1.06 8.06 -2.91 -0.02 1.04 16 34 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 35 H 0.16 2.02 6.35 -2.91 -0.02 2.00 16 36 H 0.41 7.16 6.69 -92.71 -0.62 6.54 16 37 H 0.10 2.47 7.50 -2.39 -0.02 2.45 16 38 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 39 H 0.09 2.64 7.90 -2.39 -0.02 2.62 16 40 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 41 H 0.02 0.81 7.85 -2.39 -0.02 0.79 16 42 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.37 20.32 7.67 -92.71 -0.71 19.61 16 44 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 45 H 0.11 2.10 8.10 -2.39 -0.02 2.08 16 46 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 47 H 0.15 3.01 6.00 -2.91 -0.02 2.99 16 Total: -1.00 -76.92 389.69 1.27 -75.65 By element: Atomic # 1 Polarization: 32.37 SS G_CDS: -0.32 Total: 32.06 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: 5.52 Total: -7.75 kcal Atomic # 7 Polarization: -124.04 SS G_CDS: -5.90 Total: -129.93 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.06 Total: -18.73 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -76.92 1.27 -75.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700373831.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.038 kcal (2) G-P(sol) polarization free energy of solvation -76.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds