Wall clock time and date at job start Tue Mar 31 2020 23:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36551 * 120.09028 * 2 1 4 4 C 1.40710 * 118.24247 * 180.30201 * 3 2 1 5 5 C 1.40427 * 121.28600 * 179.70623 * 4 3 2 6 6 C 1.36128 * 119.64825 * 180.02562 * 5 4 3 7 7 C 1.39441 * 120.92497 * 0.02562 * 6 5 4 8 8 C 1.35994 * 121.08378 * 359.97438 * 7 6 5 9 9 C 1.40839 * 119.73411 * 0.02562 * 8 7 6 10 10 N 1.33235 * 120.98042 * 179.97438 * 9 8 7 11 11 C 1.31902 * 121.29776 * 180.02562 * 10 9 8 12 12 C 1.48270 * 119.24341 * 179.97438 * 11 10 9 13 13 O 1.21506 * 120.00415 * 174.43084 * 12 11 10 14 14 N 1.34774 * 120.00079 * 354.42877 * 12 11 10 15 15 C 1.46499 * 120.00067 * 179.97438 * 14 12 11 16 16 H 1.08997 * 112.84970 * 23.81203 * 15 14 12 17 17 C 1.53779 * 113.61212 * 155.00201 * 15 14 12 18 18 C 1.53781 * 87.08553 * 89.20152 * 17 15 14 19 19 H 1.09004 * 113.61501 * 270.80145 * 18 17 15 20 20 C 1.52997 * 113.61921 * 139.97691 * 18 17 15 21 21 N 1.46501 * 109.47252 * 175.00199 * 20 18 17 22 22 C 1.36933 * 120.00064 * 179.72645 * 21 20 18 23 23 H 1.08000 * 120.00164 * 0.27721 * 22 21 20 24 24 C 1.38808 * 120.00224 * 180.27697 * 22 21 20 25 25 N 1.31623 * 120.00396 * 180.02562 * 24 22 21 26 26 Si 1.86802 * 119.99826 * 359.97438 * 24 22 21 27 27 H 1.48503 * 109.47098 * 90.00205 * 26 24 22 28 28 H 1.48505 * 109.47045 * 210.00204 * 26 24 22 29 29 H 1.48501 * 109.47180 * 329.99876 * 26 24 22 30 30 C 1.53780 * 87.07800 * 25.43194 * 18 17 15 31 31 H 1.09004 * 109.46947 * 263.40513 * 1 2 3 32 32 H 1.08999 * 109.47361 * 23.40529 * 1 2 3 33 33 H 1.08997 * 109.47162 * 143.41434 * 1 2 3 34 34 H 1.08005 * 120.87579 * 359.97438 * 3 2 1 35 35 H 1.08000 * 120.17823 * 359.97438 * 5 4 3 36 36 H 1.08002 * 119.53895 * 179.97438 * 6 5 4 37 37 H 1.07998 * 119.45909 * 179.97438 * 7 6 5 38 38 H 1.07998 * 120.13088 * 180.02562 * 8 7 6 39 39 H 0.97007 * 119.99956 * 0.02562 * 14 12 11 40 40 H 1.08999 * 113.61594 * 334.65207 * 17 15 14 41 41 H 1.09002 * 113.69343 * 203.75932 * 17 15 14 42 42 H 1.09007 * 109.46669 * 55.00349 * 20 18 17 43 43 H 1.08995 * 109.47104 * 295.00700 * 20 18 17 44 44 H 0.96997 * 120.00032 * 0.02562 * 21 20 18 45 45 H 0.97000 * 119.99959 * 179.97438 * 25 24 22 46 46 H 1.09000 * 113.61902 * 89.11898 * 30 18 17 47 47 H 1.09002 * 113.61952 * 220.02355 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1916 1.1815 0.0000 4 6 3.5979 1.1361 -0.0065 5 6 4.3655 2.3121 -0.0131 6 6 5.7242 2.2293 -0.0198 7 6 6.3668 0.9918 -0.0209 8 6 5.6567 -0.1681 -0.0147 9 6 4.2490 -0.1252 -0.0076 10 7 3.5288 -1.2461 -0.0019 11 6 2.2102 -1.2133 0.0042 12 6 1.4539 -2.4887 0.0097 13 8 0.2437 -2.4769 0.1175 14 7 2.1089 -3.6610 -0.1048 15 6 1.3617 -4.9211 -0.0987 16 1 0.3237 -4.7992 -0.4081 17 6 2.0874 -6.0710 -0.8170 18 6 2.7453 -6.3954 0.5346 19 1 3.6809 -5.8623 0.7039 20 6 2.8561 -7.8947 0.8183 21 7 3.5984 -8.1026 2.0641 22 6 3.8190 -9.3726 2.5259 23 1 3.4498 -10.2214 1.9694 24 6 4.5174 -9.5694 3.7093 25 7 4.7299 -10.7902 4.1530 26 14 5.1567 -8.1014 4.6715 27 1 4.1251 -7.6597 5.6441 28 1 6.3915 -8.4873 5.4007 29 1 5.4620 -6.9904 3.7347 30 6 1.5271 -5.7314 1.1978 31 1 -0.3633 -0.1180 1.0209 32 1 -0.3634 0.9431 -0.4082 33 1 -0.3633 -0.8251 -0.6125 34 1 1.6674 2.1258 -0.0004 35 1 3.8804 3.2770 -0.0136 36 1 6.3128 3.1348 -0.0253 37 1 7.4461 0.9537 -0.0267 38 1 6.1703 -1.1181 -0.0152 39 1 3.0751 -3.6704 -0.1905 40 1 2.7932 -5.7350 -1.5766 41 1 1.4195 -6.8538 -1.1765 42 1 3.3813 -8.3821 -0.0032 43 1 1.8576 -8.3210 0.9148 44 1 3.9298 -7.3403 2.5641 45 1 5.2183 -10.9276 4.9797 46 1 0.7048 -6.4206 1.3899 47 1 1.7804 -5.1211 2.0647 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700636090.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:57 Heat of formation + Delta-G solvation = 56.541884 kcal Electronic energy + Delta-G solvation = -28070.163273 eV Core-core repulsion = 24218.847342 eV Total energy + Delta-G solvation = -3851.315931 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.52491 -40.16518 -38.66206 -37.23057 -34.95539 -34.44442 -33.10674 -32.03342 -31.20426 -30.59371 -27.57964 -27.17578 -25.65424 -25.57155 -23.26753 -22.88370 -22.48791 -21.53158 -21.27540 -19.24530 -18.57777 -18.27351 -17.49773 -17.11701 -16.05871 -15.77267 -15.65663 -15.08354 -14.86167 -14.70766 -14.50843 -14.33888 -14.20652 -13.93982 -13.60438 -13.44764 -13.40213 -13.21610 -12.74853 -12.52835 -12.32759 -12.28232 -12.09767 -12.03097 -11.96497 -11.76415 -11.39013 -10.87134 -10.78759 -10.59652 -10.34834 -10.23132 -10.15541 -9.88005 -9.71381 -9.54654 -9.23307 -8.96862 -8.83767 -8.66254 -7.17861 -5.73529 -3.08153 -0.22909 0.25589 1.50344 2.06143 2.83556 2.90590 3.40072 3.43491 3.47550 3.64718 3.70909 4.09141 4.26327 4.30522 4.44928 4.61168 4.62376 4.63379 4.67732 4.70326 4.85577 4.91317 5.02679 5.05040 5.21004 5.31220 5.48874 5.51710 5.54339 5.56652 5.65265 5.68727 5.72486 5.85124 5.87643 5.89647 5.93096 5.98101 5.98972 6.10857 6.13881 6.21767 6.28773 6.38027 6.56333 6.72648 6.85918 7.16429 7.45319 7.99189 8.03602 8.46037 9.25752 9.98437 10.18817 11.45105 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011686 B = 0.002578 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.410034 B =10859.276900 C =12444.333627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.085 4.085 3 C -0.072 4.072 4 C -0.080 4.080 5 C -0.105 4.105 6 C -0.105 4.105 7 C -0.108 4.108 8 C -0.081 4.081 9 C 0.117 3.883 10 N -0.438 5.438 11 C 0.115 3.885 12 C 0.571 3.429 13 O -0.525 6.525 14 N -0.687 5.687 15 C 0.113 3.887 16 H 0.103 0.897 17 C -0.136 4.136 18 C -0.120 4.120 19 H 0.087 0.913 20 C 0.167 3.833 21 N -0.756 5.756 22 C -0.242 4.242 23 H 0.090 0.910 24 C 0.002 3.998 25 N -0.936 5.936 26 Si 0.885 3.115 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.278 1.278 30 C -0.140 4.140 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.100 0.900 34 H 0.145 0.855 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.133 0.867 38 H 0.140 0.860 39 H 0.411 0.589 40 H 0.071 0.929 41 H 0.098 0.902 42 H 0.027 0.973 43 H 0.029 0.971 44 H 0.360 0.640 45 H 0.259 0.741 46 H 0.095 0.905 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.101 30.932 -13.084 33.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.088 4.088 3 C -0.097 4.097 4 C -0.082 4.082 5 C -0.124 4.124 6 C -0.123 4.123 7 C -0.127 4.127 8 C -0.100 4.100 9 C -0.007 4.007 10 N -0.149 5.149 11 C -0.039 4.039 12 C 0.356 3.644 13 O -0.401 6.401 14 N -0.338 5.338 15 C 0.009 3.991 16 H 0.121 0.879 17 C -0.174 4.174 18 C -0.138 4.138 19 H 0.105 0.895 20 C 0.040 3.960 21 N -0.401 5.401 22 C -0.372 4.372 23 H 0.107 0.893 24 C -0.193 4.193 25 N -0.584 5.584 26 Si 0.715 3.285 27 H -0.211 1.211 28 H -0.218 1.218 29 H -0.204 1.204 30 C -0.179 4.179 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.119 0.881 34 H 0.163 0.837 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.158 0.842 39 H 0.248 0.752 40 H 0.089 0.911 41 H 0.117 0.883 42 H 0.044 0.956 43 H 0.047 0.953 44 H 0.193 0.807 45 H 0.069 0.931 46 H 0.113 0.887 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.461 29.861 -13.004 32.753 hybrid contribution 0.819 1.768 0.903 2.148 sum -2.642 31.630 -12.101 33.968 Atomic orbital electron populations 1.21087 0.88662 1.03388 1.04191 1.20553 0.98644 0.91999 0.97561 1.21367 0.92393 0.98504 0.97478 1.18971 0.94235 0.94562 1.00465 1.20995 0.94117 0.97082 1.00178 1.21029 0.94666 0.98180 0.98400 1.20959 1.00695 0.91968 0.99125 1.20935 0.91007 0.99711 0.98310 1.18827 0.94198 0.87624 1.00001 1.67804 1.06465 1.30846 1.09741 1.21207 0.89584 0.93830 0.99256 1.17861 0.86671 0.82942 0.76965 1.90738 1.13028 1.86557 1.49734 1.45576 1.11520 1.04713 1.71957 1.22013 0.96704 0.82172 0.98261 0.87876 1.23294 0.99877 0.97204 0.97034 1.22828 0.97675 0.98090 0.95246 0.89479 1.20617 0.95280 0.91119 0.88993 1.42708 1.67034 1.05181 1.25181 1.19081 1.29380 0.84106 1.04621 0.89255 1.24674 1.00751 0.95962 0.97938 1.69706 1.46383 1.18875 1.23442 0.86537 0.78590 0.83041 0.80306 1.21120 1.21767 1.20388 1.23454 0.99140 0.98635 0.96673 0.90295 0.92209 0.88119 0.83702 0.85014 0.85282 0.84951 0.84228 0.75223 0.91067 0.88346 0.95551 0.95313 0.80721 0.93120 0.88666 0.91441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 8.68 36.00 0.31 -0.75 16 2 C -0.08 -0.87 5.89 -104.48 -0.62 -1.49 16 3 C -0.07 -0.60 9.50 -39.26 -0.37 -0.98 16 4 C -0.08 -0.74 5.75 -106.72 -0.61 -1.35 16 5 C -0.11 -0.70 9.77 -39.52 -0.39 -1.09 16 6 C -0.10 -0.62 9.95 -39.89 -0.40 -1.02 16 7 C -0.11 -0.72 9.94 -39.94 -0.40 -1.12 16 8 C -0.08 -0.72 9.99 -39.40 -0.39 -1.11 16 9 C 0.12 1.27 6.61 -84.85 -0.56 0.71 16 10 N -0.44 -5.27 9.48 -7.54 -0.07 -5.35 16 11 C 0.11 1.39 6.75 -82.96 -0.56 0.83 16 12 C 0.57 7.47 7.75 -12.14 -0.09 7.38 16 13 O -0.52 -7.64 12.82 5.36 0.07 -7.57 16 14 N -0.69 -8.39 5.25 -53.83 -0.28 -8.68 16 15 C 0.11 1.39 4.32 -67.12 -0.29 1.10 16 16 H 0.10 1.28 7.46 -51.93 -0.39 0.89 16 17 C -0.14 -1.58 7.39 -25.92 -0.19 -1.78 16 18 C -0.12 -1.78 3.63 -89.81 -0.33 -2.11 16 19 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 20 C 0.17 3.21 6.10 -4.04 -0.02 3.19 16 21 N -0.76 -18.34 5.41 -59.91 -0.32 -18.66 16 22 C -0.24 -7.00 10.47 -15.06 -0.16 -7.16 16 23 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 24 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 25 N -0.94 -29.92 13.97 55.49 0.78 -29.15 16 26 Si 0.88 22.66 27.73 -169.99 -4.71 17.95 16 27 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 28 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16 29 H -0.28 -6.71 6.52 56.52 0.37 -6.34 16 30 C -0.14 -2.00 7.43 -25.92 -0.19 -2.19 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.39 8.04 -51.93 -0.42 -0.02 16 33 H 0.10 1.09 5.80 -51.93 -0.30 0.79 16 34 H 0.15 0.76 8.06 -52.48 -0.42 0.34 16 35 H 0.13 0.54 8.06 -52.49 -0.42 0.11 16 36 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 37 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 38 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.41 4.75 8.02 -40.82 -0.33 4.42 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.10 1.06 8.10 -51.93 -0.42 0.64 16 42 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.03 0.56 7.84 -51.93 -0.41 0.15 16 44 H 0.36 8.59 5.53 -40.82 -0.23 8.37 16 45 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 46 H 0.09 1.35 7.90 -51.93 -0.41 0.94 16 47 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 386.87 15.07 5.83 5.83 Total: -1.00 -34.47 386.87 -10.79 -45.26 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -6.72 Total: 9.31 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -5.36 Total: -8.95 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: 0.10 Total: -61.83 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: 0.07 Total: -7.57 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.71 Total: 17.95 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.47 -10.79 -45.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700636090.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.806 kcal (2) G-P(sol) polarization free energy of solvation -34.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds