Wall clock time and date at job start Tue Mar 31 2020 23:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36551 * 120.09028 * 2 1 4 4 C 1.40710 * 118.24247 * 180.30201 * 3 2 1 5 5 C 1.40427 * 121.28600 * 179.70623 * 4 3 2 6 6 C 1.36128 * 119.64825 * 180.02562 * 5 4 3 7 7 C 1.39441 * 120.92497 * 0.02562 * 6 5 4 8 8 C 1.35994 * 121.08378 * 359.97438 * 7 6 5 9 9 C 1.40839 * 119.73411 * 0.02562 * 8 7 6 10 10 N 1.33235 * 120.98042 * 179.97438 * 9 8 7 11 11 C 1.31902 * 121.29776 * 180.02562 * 10 9 8 12 12 C 1.48270 * 119.24341 * 179.97438 * 11 10 9 13 13 O 1.21506 * 120.00415 * 174.43084 * 12 11 10 14 14 N 1.34774 * 120.00079 * 354.42877 * 12 11 10 15 15 C 1.46499 * 120.00067 * 179.97438 * 14 12 11 16 16 H 1.08997 * 112.84970 * 23.81203 * 15 14 12 17 17 C 1.53779 * 113.61212 * 155.00201 * 15 14 12 18 18 C 1.53781 * 87.08553 * 89.20152 * 17 15 14 19 19 H 1.09004 * 113.61501 * 270.80145 * 18 17 15 20 20 C 1.52997 * 113.61921 * 139.97691 * 18 17 15 21 21 N 1.46501 * 109.47252 * 175.00199 * 20 18 17 22 22 C 1.36933 * 120.00064 * 179.72645 * 21 20 18 23 23 H 1.08000 * 120.00164 * 0.27721 * 22 21 20 24 24 C 1.38808 * 120.00224 * 180.27697 * 22 21 20 25 25 N 1.31623 * 120.00396 * 180.02562 * 24 22 21 26 26 Si 1.86802 * 119.99826 * 359.97438 * 24 22 21 27 27 H 1.48503 * 109.47098 * 90.00205 * 26 24 22 28 28 H 1.48505 * 109.47045 * 210.00204 * 26 24 22 29 29 H 1.48501 * 109.47180 * 329.99876 * 26 24 22 30 30 C 1.53780 * 87.07800 * 25.43194 * 18 17 15 31 31 H 1.09004 * 109.46947 * 263.40513 * 1 2 3 32 32 H 1.08999 * 109.47361 * 23.40529 * 1 2 3 33 33 H 1.08997 * 109.47162 * 143.41434 * 1 2 3 34 34 H 1.08005 * 120.87579 * 359.97438 * 3 2 1 35 35 H 1.08000 * 120.17823 * 359.97438 * 5 4 3 36 36 H 1.08002 * 119.53895 * 179.97438 * 6 5 4 37 37 H 1.07998 * 119.45909 * 179.97438 * 7 6 5 38 38 H 1.07998 * 120.13088 * 180.02562 * 8 7 6 39 39 H 0.97007 * 119.99956 * 0.02562 * 14 12 11 40 40 H 1.08999 * 113.61594 * 334.65207 * 17 15 14 41 41 H 1.09002 * 113.69343 * 203.75932 * 17 15 14 42 42 H 1.09007 * 109.46669 * 55.00349 * 20 18 17 43 43 H 1.08995 * 109.47104 * 295.00700 * 20 18 17 44 44 H 0.96997 * 120.00032 * 0.02562 * 21 20 18 45 45 H 0.97000 * 119.99959 * 179.97438 * 25 24 22 46 46 H 1.09000 * 113.61902 * 89.11898 * 30 18 17 47 47 H 1.09002 * 113.61952 * 220.02355 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1916 1.1815 0.0000 4 6 3.5979 1.1361 -0.0065 5 6 4.3655 2.3121 -0.0131 6 6 5.7242 2.2293 -0.0198 7 6 6.3668 0.9918 -0.0209 8 6 5.6567 -0.1681 -0.0147 9 6 4.2490 -0.1252 -0.0076 10 7 3.5288 -1.2461 -0.0019 11 6 2.2102 -1.2133 0.0042 12 6 1.4539 -2.4887 0.0097 13 8 0.2437 -2.4769 0.1175 14 7 2.1089 -3.6610 -0.1048 15 6 1.3617 -4.9211 -0.0987 16 1 0.3237 -4.7992 -0.4081 17 6 2.0874 -6.0710 -0.8170 18 6 2.7453 -6.3954 0.5346 19 1 3.6809 -5.8623 0.7039 20 6 2.8561 -7.8947 0.8183 21 7 3.5984 -8.1026 2.0641 22 6 3.8190 -9.3726 2.5259 23 1 3.4498 -10.2214 1.9694 24 6 4.5174 -9.5694 3.7093 25 7 4.7299 -10.7902 4.1530 26 14 5.1567 -8.1014 4.6715 27 1 4.1251 -7.6597 5.6441 28 1 6.3915 -8.4873 5.4007 29 1 5.4620 -6.9904 3.7347 30 6 1.5271 -5.7314 1.1978 31 1 -0.3633 -0.1180 1.0209 32 1 -0.3634 0.9431 -0.4082 33 1 -0.3633 -0.8251 -0.6125 34 1 1.6674 2.1258 -0.0004 35 1 3.8804 3.2770 -0.0136 36 1 6.3128 3.1348 -0.0253 37 1 7.4461 0.9537 -0.0267 38 1 6.1703 -1.1181 -0.0152 39 1 3.0751 -3.6704 -0.1905 40 1 2.7932 -5.7350 -1.5766 41 1 1.4195 -6.8538 -1.1765 42 1 3.3813 -8.3821 -0.0032 43 1 1.8576 -8.3210 0.9148 44 1 3.9298 -7.3403 2.5641 45 1 5.2183 -10.9276 4.9797 46 1 0.7048 -6.4206 1.3899 47 1 1.7804 -5.1211 2.0647 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700636090.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:56 Heat of formation + Delta-G solvation = 34.469222 kcal Electronic energy + Delta-G solvation = -28071.120416 eV Core-core repulsion = 24218.847342 eV Total energy + Delta-G solvation = -3852.273074 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.24800 -41.11882 -39.67375 -37.93348 -36.54320 -35.43193 -34.29829 -33.18987 -32.65109 -31.29598 -28.95586 -28.02351 -26.66110 -26.51570 -24.84675 -23.63659 -23.05555 -23.00902 -22.34763 -20.50742 -19.50939 -19.38186 -18.92497 -17.73958 -17.08960 -16.70180 -16.55616 -16.47275 -16.05044 -15.77007 -15.48186 -15.35136 -15.29524 -14.95637 -14.83288 -14.49027 -14.29538 -14.01899 -13.98217 -13.89816 -13.53628 -13.38099 -13.19243 -13.00604 -12.78098 -12.64589 -12.61543 -12.50699 -12.19221 -11.89131 -11.73067 -11.45043 -11.40475 -11.21181 -11.14700 -10.92747 -10.55195 -10.14711 -9.72595 -9.29018 -9.24128 -8.04636 -5.37167 -0.89271 -0.38548 0.87947 1.32913 1.34823 1.38007 1.45253 1.92726 2.13975 2.45997 2.90370 3.03017 3.26503 3.44750 3.49787 3.55220 3.61930 3.69247 3.82166 3.84067 3.91522 4.07455 4.08914 4.18931 4.33544 4.38024 4.50127 4.59542 4.68364 4.74132 4.79447 4.83343 4.86753 4.87803 4.92113 4.96143 5.03699 5.07987 5.10206 5.21519 5.27583 5.33034 5.36366 5.45597 5.52363 5.63502 5.74936 5.83648 6.20162 6.29704 6.62535 7.03615 7.06733 7.84399 8.02769 9.17122 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011686 B = 0.002578 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.410034 B =10859.276900 C =12444.333627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.105 4.105 3 C -0.059 4.059 4 C -0.094 4.094 5 C -0.104 4.104 6 C -0.102 4.102 7 C -0.097 4.097 8 C -0.109 4.109 9 C 0.091 3.909 10 N -0.457 5.457 11 C 0.091 3.909 12 C 0.567 3.433 13 O -0.546 6.546 14 N -0.685 5.685 15 C 0.123 3.877 16 H 0.105 0.895 17 C -0.117 4.117 18 C -0.117 4.117 19 H 0.086 0.914 20 C 0.163 3.837 21 N -0.759 5.759 22 C -0.234 4.234 23 H 0.057 0.943 24 C -0.065 4.065 25 N -0.984 5.984 26 Si 0.955 3.045 27 H -0.280 1.280 28 H -0.293 1.293 29 H -0.254 1.254 30 C -0.143 4.143 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.181 0.819 35 H 0.163 0.837 36 H 0.163 0.837 37 H 0.157 0.843 38 H 0.137 0.863 39 H 0.414 0.586 40 H 0.087 0.913 41 H 0.112 0.888 42 H 0.026 0.974 43 H 0.028 0.972 44 H 0.364 0.636 45 H 0.258 0.742 46 H 0.094 0.906 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.299 35.301 -13.900 38.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.108 4.108 3 C -0.085 4.085 4 C -0.096 4.096 5 C -0.123 4.123 6 C -0.120 4.120 7 C -0.117 4.117 8 C -0.128 4.128 9 C -0.033 4.033 10 N -0.168 5.168 11 C -0.062 4.062 12 C 0.353 3.647 13 O -0.423 6.423 14 N -0.335 5.335 15 C 0.018 3.982 16 H 0.123 0.877 17 C -0.155 4.155 18 C -0.136 4.136 19 H 0.104 0.896 20 C 0.037 3.963 21 N -0.404 5.404 22 C -0.365 4.365 23 H 0.075 0.925 24 C -0.257 4.257 25 N -0.635 5.635 26 Si 0.782 3.218 27 H -0.207 1.207 28 H -0.219 1.219 29 H -0.179 1.179 30 C -0.182 4.182 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.198 0.802 35 H 0.181 0.819 36 H 0.180 0.820 37 H 0.175 0.825 38 H 0.155 0.845 39 H 0.251 0.749 40 H 0.106 0.894 41 H 0.130 0.870 42 H 0.044 0.956 43 H 0.047 0.953 44 H 0.197 0.803 45 H 0.067 0.933 46 H 0.113 0.887 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.673 34.255 -13.865 37.051 hybrid contribution 0.631 0.449 1.089 1.336 sum -2.042 34.705 -12.777 37.038 Atomic orbital electron populations 1.20983 0.88193 1.03992 1.03387 1.20704 0.99092 0.92143 0.98826 1.21757 0.92276 0.99141 0.95278 1.19283 0.94904 0.94906 1.00553 1.21385 0.94486 0.97366 0.99014 1.21473 0.94823 0.99009 0.96681 1.21345 1.01976 0.91593 0.96751 1.21075 0.90581 1.00735 1.00359 1.19238 0.95042 0.88163 1.00845 1.67719 1.06547 1.32042 1.10533 1.21156 0.89928 0.93904 1.01207 1.18147 0.86580 0.83562 0.76384 1.90721 1.13869 1.86996 1.50764 1.45574 1.11635 1.04565 1.71768 1.21885 0.97028 0.82298 0.97035 0.87697 1.23232 0.99725 0.96919 0.95632 1.22750 0.98151 0.94778 0.97883 0.89554 1.20816 0.94322 0.94324 0.86800 1.42756 1.67505 1.03457 1.26726 1.19085 1.28081 0.85217 1.04105 0.92456 1.25507 1.01793 0.98999 0.99384 1.69884 1.47958 1.21468 1.24174 0.85407 0.77643 0.79838 0.78881 1.20673 1.21944 1.17886 1.23469 0.98768 0.98810 0.97106 0.91165 0.89444 0.90213 0.80197 0.81898 0.81951 0.82500 0.84548 0.74884 0.89436 0.86982 0.95591 0.95349 0.80311 0.93317 0.88709 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.93 8.68 71.23 0.62 -1.31 16 2 C -0.10 -2.10 5.89 -19.77 -0.12 -2.21 16 3 C -0.06 -0.87 9.50 22.48 0.21 -0.65 16 4 C -0.09 -1.54 5.75 -21.22 -0.12 -1.66 16 5 C -0.10 -1.00 9.77 22.31 0.22 -0.79 16 6 C -0.10 -0.81 9.95 22.07 0.22 -0.59 16 7 C -0.10 -1.03 9.94 22.04 0.22 -0.81 16 8 C -0.11 -1.84 9.99 22.38 0.22 -1.61 16 9 C 0.09 1.92 6.61 40.49 0.27 2.19 16 10 N -0.46 -11.19 9.48 -177.78 -1.69 -12.88 16 11 C 0.09 2.23 6.75 42.29 0.29 2.52 16 12 C 0.57 15.19 7.75 86.91 0.67 15.86 16 13 O -0.55 -16.32 12.82 -3.73 -0.05 -16.37 16 14 N -0.69 -16.71 5.25 -442.51 -2.32 -19.03 16 15 C 0.12 2.93 4.32 45.52 0.20 3.12 16 16 H 0.11 2.53 7.46 -2.39 -0.02 2.52 16 17 C -0.12 -2.53 7.39 31.12 0.23 -2.30 16 18 C -0.12 -3.37 3.63 -10.27 -0.04 -3.41 16 19 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 20 C 0.16 6.21 6.10 86.38 0.53 6.74 16 21 N -0.76 -36.66 5.41 -343.46 -1.86 -38.52 16 22 C -0.23 -13.78 10.47 84.03 0.88 -12.90 16 23 H 0.06 3.67 8.06 -2.91 -0.02 3.65 16 24 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 25 N -0.98 -64.53 13.97 21.65 0.30 -64.22 16 26 Si 0.95 47.06 27.73 68.60 1.90 48.97 16 27 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 28 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 29 H -0.25 -11.40 6.52 99.48 0.65 -10.75 16 30 C -0.14 -4.00 7.43 31.12 0.23 -3.77 16 31 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.09 0.99 8.04 -2.39 -0.02 0.97 16 33 H 0.08 1.76 5.80 -2.39 -0.01 1.75 16 34 H 0.18 1.20 8.06 -2.91 -0.02 1.17 16 35 H 0.16 0.50 8.06 -2.91 -0.02 0.48 16 36 H 0.16 0.22 8.06 -2.91 -0.02 0.20 16 37 H 0.16 0.82 8.06 -2.91 -0.02 0.80 16 38 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 39 H 0.41 9.56 8.02 -92.70 -0.74 8.81 16 40 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.11 2.18 8.10 -2.39 -0.02 2.16 16 42 H 0.03 1.00 8.14 -2.38 -0.02 0.99 16 43 H 0.03 1.10 7.84 -2.39 -0.02 1.08 16 44 H 0.36 16.95 5.53 -92.71 -0.51 16.44 16 45 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 46 H 0.09 2.65 7.90 -2.39 -0.02 2.63 16 47 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -77.44 386.87 1.17 -76.26 By element: Atomic # 1 Polarization: 31.21 SS G_CDS: -0.31 Total: 30.90 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: 5.19 Total: -5.11 kcal Atomic # 7 Polarization: -129.09 SS G_CDS: -5.56 Total: -134.65 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.05 Total: -16.37 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 1.90 Total: 48.97 kcal Total: -77.44 1.17 -76.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700636090.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.732 kcal (2) G-P(sol) polarization free energy of solvation -77.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds