Wall clock time and date at job start Tue Mar 31 2020 22:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38621 * 120.32818 * 2 1 4 4 C 1.38592 * 118.49093 * 179.70633 * 3 2 1 5 5 C 1.39311 * 119.05513 * 0.55643 * 4 3 2 6 6 C 1.48165 * 119.72263 * 179.71339 * 5 4 3 7 7 O 1.21520 * 120.00089 * 359.71807 * 6 5 4 8 8 N 1.34773 * 120.00238 * 179.72853 * 6 5 4 9 9 C 1.46505 * 120.00358 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47115 * 179.97438 * 9 8 6 11 11 H 1.09004 * 109.46980 * 65.00127 * 10 9 8 12 12 N 1.46500 * 109.47263 * 304.99595 * 10 9 8 13 13 C 1.36937 * 120.00221 * 302.87878 * 12 10 9 14 14 H 1.07996 * 119.99926 * 5.09053 * 13 12 10 15 15 C 1.38811 * 119.99675 * 185.09982 * 13 12 10 16 16 N 1.31613 * 120.00270 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99613 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47027 * 59.99708 * 17 15 13 19 19 H 1.48496 * 109.47228 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47261 * 299.99822 * 17 15 13 21 21 C 1.50704 * 109.46829 * 184.99654 * 10 9 8 22 22 C 1.38229 * 119.99929 * 333.21196 * 21 10 9 23 23 C 1.38239 * 119.99761 * 179.78796 * 22 21 10 24 24 C 1.38240 * 119.99998 * 0.43596 * 23 22 21 25 25 C 1.38231 * 119.99731 * 359.81846 * 24 23 22 26 26 C 1.38238 * 120.00524 * 359.97251 * 25 24 23 27 27 N 1.32712 * 120.55436 * 359.43007 * 5 4 3 28 28 C 1.31531 * 121.64379 * 0.28061 * 27 5 4 29 29 C 1.50700 * 119.54862 * 180.02562 * 28 27 5 30 30 H 1.09000 * 109.47573 * 270.02672 * 1 2 3 31 31 H 1.09005 * 109.46871 * 30.02307 * 1 2 3 32 32 H 1.09000 * 109.47582 * 150.01849 * 1 2 3 33 33 H 1.08002 * 120.75343 * 359.97438 * 3 2 1 34 34 H 1.07998 * 120.47154 * 180.28368 * 4 3 2 35 35 H 0.97003 * 120.00237 * 0.26278 * 8 6 5 36 36 H 1.08997 * 109.46872 * 299.99704 * 9 8 6 37 37 H 1.08997 * 109.46973 * 59.99166 * 9 8 6 38 38 H 0.97001 * 119.99835 * 122.87073 * 12 10 9 39 39 H 0.97004 * 120.00278 * 180.02562 * 16 15 13 40 40 H 1.07994 * 120.00429 * 359.97438 * 22 21 10 41 41 H 1.08004 * 120.00305 * 180.27584 * 23 22 21 42 42 H 1.08000 * 119.99739 * 179.83173 * 24 23 22 43 43 H 1.08004 * 120.00166 * 179.97438 * 25 24 23 44 44 H 1.07992 * 120.00432 * 180.02562 * 26 25 24 45 45 H 1.08997 * 109.47123 * 89.99490 * 29 28 27 46 46 H 1.08995 * 109.46875 * 209.99955 * 29 28 27 47 47 H 1.09002 * 109.46963 * 329.99469 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1965 0.0000 4 6 3.5921 1.1521 0.0062 5 6 4.2293 -0.0867 0.0004 6 6 5.7096 -0.1514 0.0006 7 8 6.3626 0.8734 0.0005 8 7 6.3319 -1.3469 0.0005 9 6 7.7955 -1.4109 0.0000 10 6 8.2420 -2.8743 0.0007 11 1 7.9323 -3.3491 -0.9304 12 7 7.6273 -3.5720 1.1328 13 6 7.8257 -3.1149 2.4083 14 1 8.3661 -2.1947 2.5742 15 6 7.3324 -3.8346 3.4879 16 7 6.6736 -4.9558 3.2857 17 14 7.6037 -3.2114 5.2279 18 1 6.9823 -1.8709 5.3761 19 1 6.9832 -4.1536 6.1935 20 1 9.0608 -3.1141 5.4973 21 6 9.7425 -2.9416 0.1240 22 6 10.5207 -1.8918 -0.3266 23 6 11.8969 -1.9516 -0.2095 24 6 12.4952 -3.0652 0.3500 25 6 11.7171 -4.1173 0.7957 26 6 10.3408 -4.0556 0.6826 27 7 3.5217 -1.2094 0.0005 28 6 2.2064 -1.1961 0.0004 29 6 1.4500 -2.4995 0.0010 30 1 -0.3634 0.0005 1.0276 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3634 -0.8901 -0.5135 33 1 1.6847 2.1419 -0.0004 34 1 4.1693 2.0649 0.0110 35 1 5.8107 -2.1650 -0.0035 36 1 8.1806 -0.9136 -0.8901 37 1 8.1812 -0.9132 0.8897 38 1 7.0795 -4.3576 0.9788 39 1 6.3285 -5.4585 4.0401 40 1 10.0536 -1.0236 -0.7673 41 1 12.5048 -1.1295 -0.5574 42 1 13.5704 -3.1131 0.4390 43 1 12.1845 -4.9875 1.2324 44 1 9.7329 -4.8773 1.0312 45 1 1.2676 -2.8132 1.0288 46 1 0.4979 -2.3672 -0.5129 47 1 2.0373 -3.2607 -0.5125 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713700454.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:05 Heat of formation + Delta-G solvation = 35.469265 kcal Electronic energy + Delta-G solvation = -28818.775527 eV Core-core repulsion = 24966.545819 eV Total energy + Delta-G solvation = -3852.229709 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.61792 -39.16239 -38.48013 -35.86237 -34.03125 -33.43766 -32.94856 -31.86841 -30.40030 -29.46370 -28.57904 -27.87029 -26.64505 -24.40823 -23.18910 -22.50961 -21.97834 -21.48423 -20.12678 -19.76525 -17.77223 -17.38527 -16.59859 -16.33257 -15.37824 -15.20183 -15.15473 -14.94104 -14.54926 -14.49473 -14.17255 -14.04382 -13.78492 -13.32657 -13.25044 -13.05183 -12.94779 -12.80873 -12.75870 -12.51806 -12.34795 -12.12277 -12.04488 -11.82536 -11.55118 -11.21235 -10.87567 -10.78803 -10.55749 -10.37410 -10.05452 -9.98545 -9.78675 -9.68844 -9.34134 -8.99777 -8.83975 -8.40865 -8.31521 -8.07739 -7.08071 -5.80715 -3.11744 0.71848 1.21959 1.93671 2.02492 2.99207 3.43889 3.47498 3.50195 3.54878 3.99605 4.19287 4.38238 4.56523 4.58439 4.72285 4.75191 4.98661 5.21659 5.29517 5.32248 5.40513 5.45029 5.49764 5.52742 5.53710 5.57365 5.62104 5.66087 5.72521 5.75807 5.87653 5.95898 6.00409 6.04708 6.08302 6.15795 6.24736 6.35614 6.56941 6.61768 6.66438 6.68568 6.93231 7.04602 7.13321 7.36082 7.62347 7.73674 7.78852 8.14472 8.35540 8.65699 9.49179 9.96751 10.33906 11.40629 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010857 B = 0.003460 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2578.476925 B = 8089.970187 C = 9504.877095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.124 4.124 3 C -0.084 4.084 4 C -0.119 4.119 5 C 0.088 3.912 6 C 0.565 3.435 7 O -0.551 6.551 8 N -0.678 5.678 9 C 0.112 3.888 10 C 0.197 3.803 11 H 0.074 0.926 12 N -0.712 5.712 13 C -0.231 4.231 14 H 0.068 0.932 15 C -0.003 4.003 16 N -0.929 5.929 17 Si 0.898 3.102 18 H -0.287 1.287 19 H -0.291 1.291 20 H -0.285 1.285 21 C -0.077 4.077 22 C -0.127 4.127 23 C -0.132 4.132 24 C -0.135 4.135 25 C -0.131 4.131 26 C -0.073 4.073 27 N -0.447 5.447 28 C 0.127 3.873 29 C -0.107 4.107 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.138 0.862 34 H 0.146 0.854 35 H 0.415 0.585 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.388 0.612 39 H 0.255 0.745 40 H 0.117 0.883 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.131 0.869 45 H 0.081 0.919 46 H 0.076 0.924 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.413 6.521 -10.267 14.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.127 4.127 3 C -0.110 4.110 4 C -0.140 4.140 5 C -0.050 4.050 6 C 0.349 3.651 7 O -0.430 6.430 8 N -0.327 5.327 9 C -0.014 4.014 10 C 0.085 3.915 11 H 0.092 0.908 12 N -0.352 5.352 13 C -0.362 4.362 14 H 0.086 0.914 15 C -0.200 4.200 16 N -0.577 5.577 17 Si 0.729 3.271 18 H -0.214 1.214 19 H -0.217 1.217 20 H -0.212 1.212 21 C -0.080 4.080 22 C -0.146 4.146 23 C -0.150 4.150 24 C -0.153 4.153 25 C -0.149 4.149 26 C -0.091 4.091 27 N -0.158 5.158 28 C -0.014 4.014 29 C -0.164 4.164 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.156 0.844 34 H 0.164 0.836 35 H 0.252 0.748 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.222 0.778 39 H 0.065 0.935 40 H 0.135 0.865 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.131 0.869 44 H 0.149 0.851 45 H 0.100 0.900 46 H 0.095 0.905 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.417 6.462 -10.078 13.583 hybrid contribution -0.532 0.622 1.317 1.551 sum -6.949 7.084 -8.761 13.237 Atomic orbital electron populations 1.20840 0.90119 1.03238 1.02834 1.20907 0.97600 0.93658 1.00495 1.21439 0.93629 0.98203 0.97706 1.22075 0.94793 0.99084 0.98059 1.21236 0.94536 0.89417 0.99858 1.17807 0.85596 0.84222 0.77515 1.90734 1.65889 1.34410 1.51977 1.45604 1.07936 1.08399 1.70714 1.21925 0.79203 0.99103 1.01185 1.19349 0.88448 0.91367 0.92304 0.90832 1.42371 1.58225 1.33368 1.01219 1.18986 1.29899 1.04513 0.82779 0.91407 1.24651 1.00874 0.96921 0.97515 1.69631 1.41814 1.16120 1.30098 0.86404 0.77791 0.77751 0.85119 1.21397 1.21742 1.21186 1.20681 0.96855 0.93721 0.96725 1.21126 0.93689 0.98582 1.01196 1.20966 0.94874 0.97974 1.01224 1.20982 0.98997 0.94641 1.00684 1.21121 0.94360 0.98606 1.00791 1.21087 0.93749 0.98562 0.95717 1.67452 1.07927 1.30386 1.10083 1.21178 0.89255 0.95231 0.95697 1.20804 0.98993 0.93054 1.03572 0.90603 0.91342 0.90585 0.84392 0.83613 0.74798 0.92345 0.91050 0.77790 0.93515 0.86464 0.87094 0.87239 0.86947 0.85069 0.90010 0.90521 0.90058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 9.62 36.00 0.35 -0.47 16 2 C -0.12 -1.38 5.91 -104.36 -0.62 -1.99 16 3 C -0.08 -0.94 9.85 -39.31 -0.39 -1.33 16 4 C -0.12 -1.69 9.63 -39.05 -0.38 -2.06 16 5 C 0.09 1.50 6.75 -83.01 -0.56 0.93 16 6 C 0.56 10.85 7.81 -12.18 -0.10 10.75 16 7 O -0.55 -11.62 16.32 5.35 0.09 -11.53 16 8 N -0.68 -12.79 5.38 -61.15 -0.33 -13.12 16 9 C 0.11 2.08 3.91 -4.04 -0.02 2.07 16 10 C 0.20 3.66 3.26 -69.08 -0.22 3.44 16 11 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 12 N -0.71 -15.96 3.85 -54.55 -0.21 -16.17 16 13 C -0.23 -5.98 8.54 -15.06 -0.13 -6.11 16 14 H 0.07 1.83 6.99 -52.49 -0.37 1.46 16 15 C 0.00 -0.09 5.50 -17.43 -0.10 -0.19 16 16 N -0.93 -26.50 13.06 55.49 0.72 -25.77 16 17 Si 0.90 22.53 29.55 -169.99 -5.02 17.50 16 18 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 19 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 21 C -0.08 -1.42 5.16 -104.62 -0.54 -1.96 16 22 C -0.13 -2.12 9.14 -39.58 -0.36 -2.48 16 23 C -0.13 -2.03 10.05 -39.58 -0.40 -2.43 16 24 C -0.13 -2.08 10.05 -39.58 -0.40 -2.47 16 25 C -0.13 -2.20 10.05 -39.58 -0.40 -2.60 16 26 C -0.07 -1.39 8.95 -39.58 -0.35 -1.74 16 27 N -0.45 -7.33 9.45 -6.06 -0.06 -7.39 16 28 C 0.13 1.69 6.78 -82.60 -0.56 1.13 16 29 C -0.11 -1.11 9.77 36.01 0.35 -0.76 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 32 H 0.08 0.46 5.95 -51.93 -0.31 0.15 16 33 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.15 1.95 7.64 -52.49 -0.40 1.55 16 35 H 0.41 7.88 7.47 -40.82 -0.31 7.57 16 36 H 0.06 0.99 6.86 -51.93 -0.36 0.64 16 37 H 0.07 1.53 7.21 -51.93 -0.37 1.15 16 38 H 0.39 9.24 8.04 -40.82 -0.33 8.91 16 39 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.12 1.79 6.22 -52.49 -0.33 1.46 16 41 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 42 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 43 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 44 H 0.13 2.73 7.51 -52.49 -0.39 2.34 16 45 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.08 0.57 5.93 -51.93 -0.31 0.26 16 47 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 390.67 15.07 5.89 5.89 Total: -1.00 -31.29 390.67 -10.14 -41.42 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: -6.41 Total: 17.44 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -4.81 Total: -8.27 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: 0.13 Total: -62.45 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.09 Total: -11.53 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.29 -10.14 -41.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713700454.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.894 kcal (2) G-P(sol) polarization free energy of solvation -31.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds