Wall clock time and date at job start Tue Mar 31 2020 22:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36612 * 120.91898 * 2 1 4 4 C 1.39275 * 119.90538 * 180.02562 * 3 2 1 5 5 N 1.31142 * 121.77044 * 0.02562 * 4 3 2 6 6 C 1.33618 * 121.39346 * 0.02562 * 5 4 3 7 7 C 1.40762 * 120.83910 * 180.02562 * 6 5 4 8 8 C 1.35694 * 120.11376 * 179.97438 * 7 6 5 9 9 C 1.40631 * 120.93126 * 0.02562 * 8 7 6 10 10 C 1.47761 * 119.80888 * 179.97438 * 9 8 7 11 11 O 1.21561 * 120.00227 * 180.02562 * 10 9 8 12 12 N 1.34781 * 119.99594 * 0.02562 * 10 9 8 13 13 C 1.46504 * 119.99846 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47328 * 180.02562 * 13 12 10 15 15 H 1.09003 * 109.47318 * 64.99343 * 14 13 12 16 16 N 1.46505 * 109.46754 * 304.99830 * 14 13 12 17 17 C 1.36930 * 120.00082 * 155.00003 * 16 14 13 18 18 H 1.08006 * 119.99928 * 359.97438 * 17 16 14 19 19 C 1.38807 * 120.00305 * 180.02562 * 17 16 14 20 20 N 1.31627 * 120.00286 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99879 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.47049 * 90.00298 * 21 19 17 23 23 H 1.48506 * 109.47180 * 209.99770 * 21 19 17 24 24 H 1.48495 * 109.47145 * 330.00057 * 21 19 17 25 25 C 1.52999 * 109.47370 * 184.99989 * 14 13 12 26 26 C 1.52996 * 117.49946 * 248.74422 * 25 14 13 27 27 C 1.52995 * 117.49816 * 180.08265 * 25 14 13 28 28 C 1.38556 * 120.39051 * 359.94397 * 9 8 7 29 29 C 1.40188 * 119.40166 * 0.07802 * 28 9 8 30 30 H 1.08999 * 109.46517 * 90.00072 * 1 2 3 31 31 H 1.08999 * 109.47108 * 209.99874 * 1 2 3 32 32 H 1.08996 * 109.47038 * 330.00122 * 1 2 3 33 33 H 1.07998 * 120.04956 * 0.02562 * 3 2 1 34 34 H 1.08002 * 119.11403 * 179.71723 * 4 3 2 35 35 H 1.08006 * 119.94409 * 0.02562 * 7 6 5 36 36 H 1.08004 * 119.53480 * 180.02562 * 8 7 6 37 37 H 0.97000 * 120.00244 * 0.02562 * 12 10 9 38 38 H 1.09009 * 109.46967 * 300.00328 * 13 12 10 39 39 H 1.09003 * 109.46896 * 59.99607 * 13 12 10 40 40 H 0.97000 * 119.99748 * 335.00433 * 16 14 13 41 41 H 0.97004 * 119.99993 * 179.97438 * 20 19 17 42 42 H 1.09007 * 115.54786 * 34.41457 * 25 14 13 43 43 H 1.08999 * 117.49570 * 0.02562 * 26 25 14 44 44 H 1.08996 * 117.49911 * 145.01841 * 26 25 14 45 45 H 1.09002 * 117.49911 * 214.97972 * 27 25 14 46 46 H 1.09001 * 117.49972 * 359.97438 * 27 25 14 47 47 H 1.07998 * 120.29494 * 180.02562 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2090 1.1720 0.0000 4 6 3.6015 1.1473 -0.0005 5 7 4.2722 0.0204 -0.0016 6 6 3.6480 -1.1610 -0.0026 7 6 4.3795 -2.3636 -0.0032 8 6 3.7305 -3.5553 -0.0037 9 6 2.3254 -3.6131 -0.0043 10 6 1.6442 -4.9243 -0.0055 11 8 0.4297 -4.9784 -0.0065 12 7 2.3693 -6.0604 -0.0055 13 6 1.6940 -7.3605 -0.0061 14 6 2.7389 -8.4781 -0.0053 15 1 3.3037 -8.4468 0.9265 16 7 3.6520 -8.2936 -1.1361 17 6 4.9201 -8.8075 -1.0830 18 1 5.2474 -9.3485 -0.2074 19 6 5.7854 -8.6322 -2.1541 20 7 7.0046 -9.1258 -2.1029 21 14 5.2197 -7.6960 -3.6683 22 1 5.5297 -6.2531 -3.5026 23 1 5.9247 -8.2193 -4.8660 24 1 3.7552 -7.8711 -3.8401 25 6 2.0378 -9.8320 -0.1317 26 6 2.0686 -10.7598 1.0845 27 6 2.9169 -11.0841 -0.1477 28 6 1.5759 -2.4478 -0.0032 29 6 2.2308 -1.2083 -0.0031 30 1 -0.3632 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6849 2.1163 0.0004 34 1 4.1436 2.0815 -0.0052 35 1 5.4593 -2.3379 -0.0023 36 1 4.3011 -4.4723 -0.0037 37 1 3.3384 -6.0173 -0.0043 38 1 1.0701 -7.4462 0.8836 39 1 1.0708 -7.4458 -0.8964 40 1 3.3582 -7.8073 -1.9223 41 1 7.6092 -9.0036 -2.8516 42 1 1.1389 -9.8402 -0.7483 43 1 2.5881 -10.4053 1.9748 44 1 1.1903 -11.3786 1.2679 45 1 2.5963 -11.9162 -0.7745 46 1 3.9949 -10.9432 -0.0686 47 1 0.4969 -2.4940 -0.0032 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713869242.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:15 Heat of formation + Delta-G solvation = 54.725911 kcal Electronic energy + Delta-G solvation = -28472.052533 eV Core-core repulsion = 24620.657855 eV Total energy + Delta-G solvation = -3851.394678 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.20335 -39.64144 -37.75960 -36.80095 -35.04445 -34.77627 -33.52866 -31.53868 -30.80639 -30.54796 -28.64872 -28.02181 -25.02437 -23.85345 -23.33997 -22.29036 -21.73349 -21.24368 -20.80374 -19.86879 -18.54672 -18.05151 -17.43807 -16.83226 -16.09148 -15.65580 -15.47815 -15.05461 -14.79378 -14.50099 -14.38806 -14.28766 -14.17064 -13.82331 -13.74581 -13.39998 -13.27537 -13.02349 -12.86522 -12.75842 -12.53498 -11.95444 -11.80037 -11.61329 -11.53114 -11.40938 -10.97021 -10.91551 -10.76749 -10.44667 -10.30047 -9.97175 -9.75620 -9.73003 -9.55422 -9.42088 -9.08685 -9.04967 -8.83694 -8.40120 -7.40444 -5.85927 -3.22651 0.01773 0.46820 1.68474 2.30475 3.26030 3.29547 3.32064 3.35869 3.41413 3.92057 4.03523 4.22211 4.32632 4.37143 4.49744 4.50940 4.67293 4.81397 4.90301 4.98369 5.06789 5.08781 5.18118 5.21088 5.29089 5.38084 5.40816 5.53141 5.62446 5.63063 5.69720 5.71944 5.75534 5.84612 5.87769 5.94445 6.09184 6.10925 6.13539 6.16351 6.27800 6.42195 6.53466 6.55526 6.68780 6.70853 6.96542 7.66671 7.68965 7.87964 8.30568 8.32233 9.09207 9.81877 10.00955 11.31582 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012647 B = 0.003030 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.462545 B = 9239.507996 C =10747.060183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.012 4.012 3 C -0.189 4.189 4 C 0.141 3.859 5 N -0.481 5.481 6 C 0.147 3.853 7 C -0.097 4.097 8 C -0.072 4.072 9 C -0.128 4.128 10 C 0.554 3.446 11 O -0.548 6.548 12 N -0.709 5.709 13 C 0.115 3.885 14 C 0.198 3.802 15 H 0.065 0.935 16 N -0.743 5.743 17 C -0.243 4.243 18 H 0.093 0.907 19 C 0.011 3.989 20 N -0.929 5.929 21 Si 0.877 3.123 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.277 1.277 25 C -0.164 4.164 26 C -0.193 4.193 27 C -0.154 4.154 28 C -0.032 4.032 29 C -0.114 4.114 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.138 0.862 34 H 0.160 0.840 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.410 0.590 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.362 0.638 41 H 0.260 0.740 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.111 0.889 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.773 17.117 6.272 21.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.021 4.021 3 C -0.208 4.208 4 C -0.031 4.031 5 N -0.189 5.189 6 C 0.025 3.975 7 C -0.115 4.115 8 C -0.092 4.092 9 C -0.131 4.131 10 C 0.341 3.659 11 O -0.427 6.427 12 N -0.361 5.361 13 C -0.009 4.009 14 C 0.088 3.912 15 H 0.083 0.917 16 N -0.385 5.385 17 C -0.373 4.373 18 H 0.110 0.890 19 C -0.186 4.186 20 N -0.576 5.576 21 Si 0.707 3.293 22 H -0.210 1.210 23 H -0.218 1.218 24 H -0.203 1.203 25 C -0.186 4.186 26 C -0.231 4.231 27 C -0.191 4.191 28 C -0.051 4.051 29 C -0.116 4.116 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.155 0.845 34 H 0.177 0.823 35 H 0.161 0.839 36 H 0.158 0.842 37 H 0.248 0.752 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.195 0.805 41 H 0.070 0.930 42 H 0.109 0.891 43 H 0.106 0.894 44 H 0.100 0.900 45 H 0.098 0.902 46 H 0.129 0.871 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -11.446 16.823 6.331 21.310 hybrid contribution -0.665 0.532 -1.372 1.615 sum -12.110 17.356 4.959 21.736 Atomic orbital electron populations 1.20942 0.89779 1.03906 1.03478 1.20241 0.96768 0.92013 0.93031 1.21748 0.95632 0.98729 1.04740 1.22992 0.91510 0.96492 0.92114 1.68077 1.39913 0.97712 1.13210 1.19012 0.89547 0.92573 0.96338 1.20730 1.00864 0.89643 1.00288 1.21131 0.93132 0.98975 0.95993 1.20021 0.93819 0.93769 1.05530 1.18152 0.86889 0.83996 0.76831 1.90742 1.13384 1.87675 1.50916 1.45957 1.11334 1.05450 1.73390 1.21705 0.95494 0.81595 1.02086 1.20034 0.89206 0.89243 0.92713 0.91714 1.42856 1.12128 1.66860 1.16682 1.18997 0.86413 1.29152 1.02728 0.88954 1.24630 0.95790 1.00446 0.97690 1.69689 1.06065 1.49795 1.32098 0.86678 0.77989 0.80215 0.84396 1.20998 1.21772 1.20348 1.22937 1.01108 0.93802 1.00707 1.22955 1.02617 1.04555 0.92972 1.22852 0.99684 0.97667 0.98935 1.21434 1.00635 0.89676 0.93380 1.18665 0.94109 0.93949 1.04890 0.89883 0.90332 0.90487 0.84458 0.82302 0.83880 0.84179 0.75222 0.90947 0.91581 0.80479 0.92973 0.89132 0.89382 0.90028 0.90191 0.87079 0.83668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 9.59 36.01 0.35 -0.50 16 2 C -0.01 -0.12 5.92 -104.22 -0.62 -0.74 16 3 C -0.19 -1.53 9.72 -39.78 -0.39 -1.92 16 4 C 0.14 1.31 11.14 -17.46 -0.19 1.12 16 5 N -0.48 -6.06 10.33 -10.92 -0.11 -6.17 16 6 C 0.15 1.95 6.61 -84.78 -0.56 1.39 16 7 C -0.10 -1.26 9.95 -39.54 -0.39 -1.65 16 8 C -0.07 -0.95 9.44 -39.59 -0.37 -1.32 16 9 C -0.13 -1.79 5.87 -104.98 -0.62 -2.41 16 10 C 0.55 8.75 7.77 -12.37 -0.10 8.65 16 11 O -0.55 -9.88 16.31 5.31 0.09 -9.79 16 12 N -0.71 -10.90 5.34 -61.27 -0.33 -11.23 16 13 C 0.12 1.79 5.21 -4.04 -0.02 1.77 16 14 C 0.20 3.40 2.70 -67.93 -0.18 3.22 16 15 H 0.06 1.14 7.84 -51.93 -0.41 0.74 16 16 N -0.74 -15.56 4.34 -53.42 -0.23 -15.79 16 17 C -0.24 -6.12 9.11 -15.06 -0.14 -6.26 16 18 H 0.09 2.50 7.14 -52.48 -0.37 2.13 16 19 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16 20 N -0.93 -27.54 13.97 55.49 0.78 -26.77 16 21 Si 0.88 21.11 27.73 -169.99 -4.71 16.40 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.28 -6.43 6.52 56.52 0.37 -6.07 16 25 C -0.16 -2.68 5.36 -90.63 -0.49 -3.17 16 26 C -0.19 -2.82 10.18 -26.70 -0.27 -3.09 16 27 C -0.15 -2.68 9.78 -26.70 -0.26 -2.94 16 28 C -0.03 -0.40 8.88 -38.73 -0.34 -0.75 16 29 C -0.11 -1.39 5.74 -106.82 -0.61 -2.00 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.55 6.52 -51.93 -0.34 0.22 16 32 H 0.08 0.38 8.10 -51.93 -0.42 -0.05 16 33 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.14 1.69 8.06 -52.48 -0.42 1.26 16 36 H 0.14 1.74 6.35 -52.48 -0.33 1.40 16 37 H 0.41 6.21 6.13 -40.82 -0.25 5.96 16 38 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.36 7.78 5.66 -40.82 -0.23 7.55 16 41 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.09 1.42 8.11 -51.93 -0.42 1.00 16 43 H 0.09 1.25 8.05 -51.93 -0.42 0.83 16 44 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 46 H 0.11 2.25 6.23 -51.93 -0.32 1.93 16 47 H 0.15 1.71 6.00 -52.49 -0.31 1.39 16 LS Contribution 386.54 15.07 5.83 5.83 Total: -1.00 -31.69 386.54 -10.39 -42.08 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: -6.38 Total: 15.84 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -5.31 Total: -10.39 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: 0.10 Total: -59.97 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.71 Total: 16.40 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.69 -10.39 -42.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713869242.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.808 kcal (2) G-P(sol) polarization free energy of solvation -31.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds