Wall clock time and date at job start Tue Mar 31 2020 22:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36621 * 120.92035 * 2 1 4 4 C 1.39273 * 119.90472 * 180.02562 * 3 2 1 5 5 N 1.31145 * 121.77429 * 359.97294 * 4 3 2 6 6 C 1.33622 * 121.39081 * 0.02562 * 5 4 3 7 7 C 1.40762 * 120.83433 * 180.02562 * 6 5 4 8 8 C 1.35703 * 120.11083 * 179.67190 * 7 6 5 9 9 C 1.40627 * 120.92594 * 0.56127 * 8 7 6 10 10 C 1.47766 * 119.80465 * 179.73070 * 9 8 7 11 11 O 1.21563 * 120.00216 * 179.72640 * 10 9 8 12 12 N 1.34777 * 119.99501 * 359.72336 * 10 9 8 13 13 C 1.46499 * 119.99665 * 179.72380 * 12 10 9 14 14 C 1.53004 * 109.47198 * 180.27868 * 13 12 10 15 15 H 1.08992 * 109.46993 * 295.00086 * 14 13 12 16 16 N 1.46506 * 109.46943 * 54.99919 * 14 13 12 17 17 C 1.36929 * 119.99909 * 205.00011 * 16 14 13 18 18 H 1.08006 * 120.00094 * 0.02562 * 17 16 14 19 19 C 1.38816 * 120.00176 * 180.02562 * 17 16 14 20 20 N 1.31615 * 119.99668 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00011 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47263 * 59.99982 * 21 19 17 23 23 H 1.48501 * 109.46944 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.47333 * 300.00103 * 21 19 17 25 25 C 1.52995 * 109.47195 * 174.99817 * 14 13 12 26 26 C 1.52999 * 117.50225 * 248.74775 * 25 14 13 27 27 C 1.52999 * 117.49761 * 180.08552 * 25 14 13 28 28 C 1.38552 * 120.39760 * 359.45399 * 9 8 7 29 29 C 1.40191 * 119.39829 * 0.25635 * 28 9 8 30 30 H 1.09007 * 109.47201 * 270.02591 * 1 2 3 31 31 H 1.08997 * 109.47222 * 30.02455 * 1 2 3 32 32 H 1.08995 * 109.47312 * 150.02889 * 1 2 3 33 33 H 1.07998 * 120.04582 * 359.96971 * 3 2 1 34 34 H 1.07995 * 119.11271 * 179.97438 * 4 3 2 35 35 H 1.08005 * 119.94426 * 359.96619 * 7 6 5 36 36 H 1.07998 * 119.53525 * 180.29523 * 8 7 6 37 37 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 38 38 H 1.09009 * 109.47454 * 300.27637 * 13 12 10 39 39 H 1.08998 * 109.47492 * 60.27932 * 13 12 10 40 40 H 0.97002 * 119.99781 * 25.00223 * 16 14 13 41 41 H 0.96996 * 119.99816 * 180.02562 * 20 19 17 42 42 H 1.09006 * 115.55266 * 34.42181 * 25 14 13 43 43 H 1.08993 * 117.49781 * 359.97438 * 26 25 14 44 44 H 1.09000 * 117.50138 * 145.02405 * 26 25 14 45 45 H 1.09009 * 117.50018 * 214.98040 * 27 25 14 46 46 H 1.08999 * 117.50301 * 359.97438 * 27 25 14 47 47 H 1.07994 * 120.30369 * 180.27286 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1720 0.0000 4 6 3.6015 1.1474 -0.0005 5 7 4.2722 0.0204 -0.0005 6 6 3.6480 -1.1611 -0.0005 7 6 4.3796 -2.3636 0.0000 8 6 3.7305 -3.5553 0.0068 9 6 2.3255 -3.6131 0.0015 10 6 1.6443 -4.9244 0.0030 11 8 0.4298 -4.9785 0.0035 12 7 2.3695 -6.0604 0.0038 13 6 1.6942 -7.3604 0.0114 14 6 2.7392 -8.4780 0.0178 15 1 3.3045 -8.4521 -0.9138 16 7 3.6516 -8.2870 1.1481 17 6 4.9197 -8.8011 1.0987 18 1 5.2475 -9.3471 0.2264 19 6 5.7841 -8.6206 2.1699 20 7 5.3844 -7.9556 3.2331 21 14 7.5143 -9.3214 2.1022 22 1 8.2426 -8.7317 0.9503 23 1 8.2304 -8.9941 3.3613 24 1 7.4452 -10.7961 1.9416 25 6 2.0380 -9.8312 0.1515 26 6 2.2310 -10.6007 1.4597 27 6 2.9175 -11.0829 0.1793 28 6 1.5759 -2.4479 0.0006 29 6 2.2308 -1.2083 -0.0004 30 1 -0.3634 0.0005 1.0277 31 1 -0.3633 0.8897 -0.5142 32 1 -0.3634 -0.8902 -0.5134 33 1 1.6848 2.1163 -0.0005 34 1 4.1436 2.0814 -0.0010 35 1 5.4593 -2.3378 -0.0001 36 1 4.3011 -4.4723 0.0120 37 1 3.3385 -6.0173 0.0038 38 1 1.0708 -7.4409 0.9021 39 1 1.0706 -7.4512 -0.8779 40 1 3.3573 -7.7963 1.9313 41 1 5.9885 -7.8292 3.9814 42 1 1.0679 -9.9086 -0.3395 43 1 2.8578 -10.1431 2.2250 44 1 1.3880 -11.1847 1.8292 45 1 2.5258 -11.9838 -0.2931 46 1 3.9956 -10.9423 0.1019 47 1 0.4969 -2.4940 0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713869243.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:20 Heat of formation + Delta-G solvation = 54.023992 kcal Electronic energy + Delta-G solvation = -28489.743420 eV Core-core repulsion = 24638.318304 eV Total energy + Delta-G solvation = -3851.425115 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.11641 -39.51134 -37.71029 -36.70595 -34.93609 -34.52438 -33.29361 -31.36576 -30.50326 -30.44296 -28.39836 -27.86950 -24.91862 -23.78405 -23.52910 -22.56827 -21.55043 -21.15579 -20.65596 -19.28875 -18.24342 -17.92183 -17.19904 -16.74423 -16.03934 -15.54747 -15.31327 -14.93193 -14.69390 -14.50827 -14.40494 -14.18260 -14.00293 -13.66250 -13.59834 -13.31233 -13.21337 -12.94535 -12.91042 -12.67437 -12.16828 -11.87235 -11.66879 -11.52008 -11.28842 -11.19208 -10.89677 -10.86945 -10.55116 -10.36785 -10.17247 -9.84836 -9.69319 -9.65689 -9.47621 -9.19236 -9.01312 -8.97868 -8.68847 -8.30782 -7.10793 -5.86507 -3.17191 0.10378 0.55532 1.76931 2.40434 3.36684 3.38299 3.43064 3.44375 3.45343 4.01255 4.11283 4.29834 4.39711 4.47148 4.57798 4.60986 4.78015 4.90809 5.00617 5.09345 5.13559 5.24944 5.28472 5.34441 5.43815 5.48311 5.54493 5.69012 5.71932 5.78567 5.82893 5.83848 5.93708 5.95043 6.02025 6.04562 6.19581 6.24252 6.35526 6.37006 6.42481 6.61770 6.64904 6.70771 6.84836 6.98198 7.25973 7.62338 7.73841 7.84687 8.30239 8.45614 9.42740 9.95863 10.32231 11.34599 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012941 B = 0.002892 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.066672 B = 9679.379637 C =11442.174871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.012 4.012 3 C -0.190 4.190 4 C 0.140 3.860 5 N -0.481 5.481 6 C 0.146 3.854 7 C -0.098 4.098 8 C -0.068 4.068 9 C -0.125 4.125 10 C 0.554 3.446 11 O -0.551 6.551 12 N -0.704 5.704 13 C 0.119 3.881 14 C 0.191 3.809 15 H 0.058 0.942 16 N -0.718 5.718 17 C -0.243 4.243 18 H 0.071 0.929 19 C -0.006 4.006 20 N -0.927 5.927 21 Si 0.902 3.098 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.286 1.286 25 C -0.178 4.178 26 C -0.163 4.163 27 C -0.176 4.176 28 C -0.033 4.033 29 C -0.114 4.114 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.137 0.863 34 H 0.159 0.841 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.410 0.590 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.386 0.614 41 H 0.257 0.743 42 H 0.086 0.914 43 H 0.118 0.882 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.102 0.898 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.986 14.622 -7.846 18.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.021 4.021 3 C -0.210 4.210 4 C -0.032 4.032 5 N -0.190 5.190 6 C 0.025 3.975 7 C -0.117 4.117 8 C -0.088 4.088 9 C -0.128 4.128 10 C 0.341 3.659 11 O -0.431 6.431 12 N -0.355 5.355 13 C -0.006 4.006 14 C 0.081 3.919 15 H 0.076 0.924 16 N -0.360 5.360 17 C -0.374 4.374 18 H 0.089 0.911 19 C -0.203 4.203 20 N -0.574 5.574 21 Si 0.733 3.267 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.213 1.213 25 C -0.199 4.199 26 C -0.200 4.200 27 C -0.212 4.212 28 C -0.053 4.053 29 C -0.116 4.116 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.155 0.845 34 H 0.176 0.824 35 H 0.160 0.840 36 H 0.159 0.841 37 H 0.248 0.752 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.221 0.779 41 H 0.066 0.934 42 H 0.104 0.896 43 H 0.137 0.863 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.121 0.879 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.717 14.365 -7.870 18.106 hybrid contribution 0.512 -0.339 0.400 0.733 sum -7.205 14.027 -7.470 17.449 Atomic orbital electron populations 1.20938 0.89823 1.03847 1.03485 1.20239 0.96741 0.92032 0.93044 1.21732 0.95625 0.98690 1.04905 1.22969 0.91504 0.96472 0.92302 1.68072 1.39927 0.97727 1.13229 1.19006 0.89555 0.92543 0.96399 1.20709 1.00764 0.89658 1.00539 1.21131 0.93143 0.98938 0.95586 1.20036 0.93822 0.93812 1.05129 1.18134 0.86864 0.84028 0.76883 1.90734 1.13450 1.87703 1.51205 1.45917 1.11326 1.05338 1.72957 1.21631 0.95483 0.81742 1.01716 1.20001 0.89603 0.89344 0.93001 0.92444 1.42477 1.10964 1.65632 1.16884 1.19110 0.88670 1.28542 1.01052 0.91103 1.24706 0.98255 1.00785 0.96521 1.69642 1.35869 1.45231 1.06681 0.86357 0.84800 0.78802 0.76733 1.21266 1.21781 1.21274 1.23059 0.99428 0.94713 1.02731 1.22912 1.02026 1.02582 0.92447 1.22854 0.99993 0.96019 1.02380 1.21426 1.00616 0.89692 0.93569 1.18663 0.94105 0.93943 1.04881 0.89873 0.90552 0.90339 0.84533 0.82389 0.84011 0.84133 0.75172 0.91451 0.91617 0.77905 0.93353 0.89612 0.86339 0.91292 0.91026 0.87923 0.83728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 9.59 36.00 0.35 -0.57 16 2 C -0.01 -0.13 5.92 -104.22 -0.62 -0.74 16 3 C -0.19 -1.63 9.72 -39.78 -0.39 -2.02 16 4 C 0.14 1.36 11.14 -17.46 -0.19 1.17 16 5 N -0.48 -6.29 10.33 -10.92 -0.11 -6.40 16 6 C 0.15 2.02 6.61 -84.77 -0.56 1.46 16 7 C -0.10 -1.33 9.95 -39.54 -0.39 -1.72 16 8 C -0.07 -0.94 9.44 -39.59 -0.37 -1.31 16 9 C -0.12 -1.84 5.87 -104.99 -0.62 -2.46 16 10 C 0.55 9.26 7.77 -12.37 -0.10 9.17 16 11 O -0.55 -10.48 16.31 5.31 0.09 -10.39 16 12 N -0.70 -11.48 5.34 -61.27 -0.33 -11.80 16 13 C 0.12 1.96 5.22 -4.04 -0.02 1.94 16 14 C 0.19 3.41 2.86 -67.93 -0.19 3.22 16 15 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 16 N -0.72 -15.52 3.08 -53.42 -0.16 -15.69 16 17 C -0.24 -5.91 8.15 -15.06 -0.12 -6.03 16 18 H 0.07 1.70 6.91 -52.48 -0.36 1.34 16 19 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 20 N -0.93 -25.80 13.06 55.49 0.72 -25.07 16 21 Si 0.90 21.05 29.55 -169.99 -5.02 16.02 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 C -0.18 -3.02 5.70 -90.62 -0.52 -3.54 16 26 C -0.16 -3.00 9.74 -26.69 -0.26 -3.26 16 27 C -0.18 -3.08 9.87 -26.69 -0.26 -3.34 16 28 C -0.03 -0.45 8.88 -38.73 -0.34 -0.79 16 29 C -0.11 -1.46 5.74 -106.82 -0.61 -2.07 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.41 8.10 -51.93 -0.42 -0.01 16 32 H 0.08 0.60 6.51 -51.93 -0.34 0.26 16 33 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 34 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.14 1.74 8.06 -52.48 -0.42 1.31 16 36 H 0.14 1.87 6.35 -52.49 -0.33 1.53 16 37 H 0.41 6.66 6.12 -40.82 -0.25 6.41 16 38 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.39 9.25 7.80 -40.82 -0.32 8.93 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.09 1.30 8.11 -51.93 -0.42 0.88 16 43 H 0.12 2.62 6.68 -51.93 -0.35 2.27 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 46 H 0.10 2.01 6.22 -51.93 -0.32 1.69 16 47 H 0.15 1.81 6.00 -52.49 -0.31 1.50 16 LS Contribution 386.74 15.07 5.83 5.83 Total: -1.00 -29.76 386.74 -10.68 -40.44 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: -6.37 Total: 18.20 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -5.32 Total: -11.14 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: 0.12 Total: -58.97 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.76 -10.68 -40.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713869243.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.466 kcal (2) G-P(sol) polarization free energy of solvation -29.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds