Wall clock time and date at job start Tue Mar 31 2020 22:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36621 * 120.92035 * 2 1 4 4 C 1.39273 * 119.90472 * 180.02562 * 3 2 1 5 5 N 1.31145 * 121.77429 * 359.97294 * 4 3 2 6 6 C 1.33622 * 121.39081 * 0.02562 * 5 4 3 7 7 C 1.40762 * 120.83433 * 180.02562 * 6 5 4 8 8 C 1.35703 * 120.11083 * 179.67190 * 7 6 5 9 9 C 1.40627 * 120.92594 * 0.56127 * 8 7 6 10 10 C 1.47766 * 119.80465 * 179.73070 * 9 8 7 11 11 O 1.21563 * 120.00216 * 179.72640 * 10 9 8 12 12 N 1.34777 * 119.99501 * 359.72336 * 10 9 8 13 13 C 1.46499 * 119.99665 * 179.72380 * 12 10 9 14 14 C 1.53004 * 109.47198 * 180.27868 * 13 12 10 15 15 H 1.08992 * 109.46993 * 295.00086 * 14 13 12 16 16 N 1.46506 * 109.46943 * 54.99919 * 14 13 12 17 17 C 1.36929 * 119.99909 * 205.00011 * 16 14 13 18 18 H 1.08006 * 120.00094 * 0.02562 * 17 16 14 19 19 C 1.38816 * 120.00176 * 180.02562 * 17 16 14 20 20 N 1.31615 * 119.99668 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00011 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47263 * 59.99982 * 21 19 17 23 23 H 1.48501 * 109.46944 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.47333 * 300.00103 * 21 19 17 25 25 C 1.52995 * 109.47195 * 174.99817 * 14 13 12 26 26 C 1.52999 * 117.50225 * 248.74775 * 25 14 13 27 27 C 1.52999 * 117.49761 * 180.08552 * 25 14 13 28 28 C 1.38552 * 120.39760 * 359.45399 * 9 8 7 29 29 C 1.40191 * 119.39829 * 0.25635 * 28 9 8 30 30 H 1.09007 * 109.47201 * 270.02591 * 1 2 3 31 31 H 1.08997 * 109.47222 * 30.02455 * 1 2 3 32 32 H 1.08995 * 109.47312 * 150.02889 * 1 2 3 33 33 H 1.07998 * 120.04582 * 359.96971 * 3 2 1 34 34 H 1.07995 * 119.11271 * 179.97438 * 4 3 2 35 35 H 1.08005 * 119.94426 * 359.96619 * 7 6 5 36 36 H 1.07998 * 119.53525 * 180.29523 * 8 7 6 37 37 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 38 38 H 1.09009 * 109.47454 * 300.27637 * 13 12 10 39 39 H 1.08998 * 109.47492 * 60.27932 * 13 12 10 40 40 H 0.97002 * 119.99781 * 25.00223 * 16 14 13 41 41 H 0.96996 * 119.99816 * 180.02562 * 20 19 17 42 42 H 1.09006 * 115.55266 * 34.42181 * 25 14 13 43 43 H 1.08993 * 117.49781 * 359.97438 * 26 25 14 44 44 H 1.09000 * 117.50138 * 145.02405 * 26 25 14 45 45 H 1.09009 * 117.50018 * 214.98040 * 27 25 14 46 46 H 1.08999 * 117.50301 * 359.97438 * 27 25 14 47 47 H 1.07994 * 120.30369 * 180.27286 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1720 0.0000 4 6 3.6015 1.1474 -0.0005 5 7 4.2722 0.0204 -0.0005 6 6 3.6480 -1.1611 -0.0005 7 6 4.3796 -2.3636 0.0000 8 6 3.7305 -3.5553 0.0068 9 6 2.3255 -3.6131 0.0015 10 6 1.6443 -4.9244 0.0030 11 8 0.4298 -4.9785 0.0035 12 7 2.3695 -6.0604 0.0038 13 6 1.6942 -7.3604 0.0114 14 6 2.7392 -8.4780 0.0178 15 1 3.3045 -8.4521 -0.9138 16 7 3.6516 -8.2870 1.1481 17 6 4.9197 -8.8011 1.0987 18 1 5.2475 -9.3471 0.2264 19 6 5.7841 -8.6206 2.1699 20 7 5.3844 -7.9556 3.2331 21 14 7.5143 -9.3214 2.1022 22 1 8.2426 -8.7317 0.9503 23 1 8.2304 -8.9941 3.3613 24 1 7.4452 -10.7961 1.9416 25 6 2.0380 -9.8312 0.1515 26 6 2.2310 -10.6007 1.4597 27 6 2.9175 -11.0829 0.1793 28 6 1.5759 -2.4479 0.0006 29 6 2.2308 -1.2083 -0.0004 30 1 -0.3634 0.0005 1.0277 31 1 -0.3633 0.8897 -0.5142 32 1 -0.3634 -0.8902 -0.5134 33 1 1.6848 2.1163 -0.0005 34 1 4.1436 2.0814 -0.0010 35 1 5.4593 -2.3378 -0.0001 36 1 4.3011 -4.4723 0.0120 37 1 3.3385 -6.0173 0.0038 38 1 1.0708 -7.4409 0.9021 39 1 1.0706 -7.4512 -0.8779 40 1 3.3573 -7.7963 1.9313 41 1 5.9885 -7.8292 3.9814 42 1 1.0679 -9.9086 -0.3395 43 1 2.8578 -10.1431 2.2250 44 1 1.3880 -11.1847 1.8292 45 1 2.5258 -11.9838 -0.2931 46 1 3.9956 -10.9423 0.1019 47 1 0.4969 -2.4940 0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713869243.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:18 Heat of formation + Delta-G solvation = 37.297199 kcal Electronic energy + Delta-G solvation = -28490.468748 eV Core-core repulsion = 24638.318304 eV Total energy + Delta-G solvation = -3852.150443 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.05370 -40.77007 -39.18055 -37.74577 -36.02771 -35.64946 -35.06943 -32.80361 -31.77106 -31.42241 -29.78457 -28.75683 -26.14182 -25.29422 -24.66651 -23.89194 -22.97522 -22.08750 -21.88800 -20.71171 -19.55665 -19.04145 -18.80496 -17.72239 -17.11496 -16.78357 -16.73818 -16.31032 -16.17607 -15.62514 -15.50700 -15.36121 -15.22919 -15.08275 -14.64331 -14.55958 -14.43524 -13.97344 -13.77795 -13.71794 -13.44024 -12.98749 -12.83343 -12.72722 -12.68646 -12.61386 -12.59295 -12.38456 -12.14797 -11.96015 -11.58366 -11.20783 -11.18810 -11.01656 -10.81419 -10.60984 -10.51355 -10.14295 -9.82629 -9.28236 -8.98748 -7.87277 -5.14933 -0.83445 -0.37371 0.83125 1.37271 1.50488 1.51592 1.56454 2.14653 2.28557 2.59201 3.03979 3.14373 3.25701 3.46082 3.47429 3.60194 3.66902 3.80213 3.87425 3.96433 3.99295 4.02201 4.24763 4.29141 4.34697 4.45587 4.50653 4.51001 4.58773 4.66383 4.72880 4.74957 4.85356 4.89303 4.94107 4.97929 5.02400 5.14569 5.17702 5.19247 5.24635 5.31704 5.41259 5.48415 5.53432 5.67713 5.69757 5.75252 6.32174 6.51150 6.88879 7.12778 7.41066 8.11496 8.37059 9.34616 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012941 B = 0.002892 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.066672 B = 9679.379637 C =11442.174871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.019 4.019 3 C -0.178 4.178 4 C 0.144 3.856 5 N -0.515 5.515 6 C 0.131 3.869 7 C -0.108 4.108 8 C -0.073 4.073 9 C -0.148 4.148 10 C 0.556 3.444 11 O -0.578 6.578 12 N -0.704 5.704 13 C 0.127 3.873 14 C 0.192 3.808 15 H 0.062 0.938 16 N -0.720 5.720 17 C -0.219 4.219 18 H 0.076 0.924 19 C -0.064 4.064 20 N -0.963 5.963 21 Si 0.955 3.045 22 H -0.279 1.279 23 H -0.305 1.305 24 H -0.285 1.285 25 C -0.167 4.167 26 C -0.173 4.173 27 C -0.171 4.171 28 C -0.025 4.025 29 C -0.131 4.131 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.071 0.929 33 H 0.179 0.821 34 H 0.195 0.805 35 H 0.147 0.853 36 H 0.138 0.862 37 H 0.410 0.590 38 H 0.055 0.945 39 H 0.084 0.916 40 H 0.374 0.626 41 H 0.246 0.754 42 H 0.117 0.883 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.101 0.899 46 H 0.078 0.922 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.266 16.237 -9.414 20.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.027 4.027 3 C -0.198 4.198 4 C -0.028 4.028 5 N -0.224 5.224 6 C 0.010 3.990 7 C -0.126 4.126 8 C -0.093 4.093 9 C -0.151 4.151 10 C 0.344 3.656 11 O -0.460 6.460 12 N -0.354 5.354 13 C 0.003 3.997 14 C 0.083 3.917 15 H 0.080 0.920 16 N -0.361 5.361 17 C -0.351 4.351 18 H 0.094 0.906 19 C -0.257 4.257 20 N -0.613 5.613 21 Si 0.786 3.214 22 H -0.205 1.205 23 H -0.232 1.232 24 H -0.211 1.211 25 C -0.188 4.188 26 C -0.211 4.211 27 C -0.208 4.208 28 C -0.045 4.045 29 C -0.133 4.133 30 H 0.109 0.891 31 H 0.121 0.879 32 H 0.090 0.910 33 H 0.196 0.804 34 H 0.212 0.788 35 H 0.164 0.836 36 H 0.156 0.844 37 H 0.248 0.752 38 H 0.073 0.927 39 H 0.102 0.898 40 H 0.206 0.794 41 H 0.055 0.945 42 H 0.134 0.866 43 H 0.095 0.905 44 H 0.109 0.891 45 H 0.119 0.881 46 H 0.097 0.903 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -9.003 15.959 -9.489 20.635 hybrid contribution 0.839 -0.672 0.824 1.354 sum -8.164 15.288 -8.666 19.377 Atomic orbital electron populations 1.21019 0.87791 1.04887 1.04266 1.20630 0.98265 0.91435 0.92388 1.22189 0.95213 0.99831 1.02536 1.23724 0.92630 0.96727 0.89683 1.68110 1.40856 0.98287 1.15182 1.19174 0.90178 0.92994 0.96703 1.20822 1.01116 0.89864 1.00830 1.21058 0.92884 0.99063 0.96274 1.19918 0.94167 0.93236 1.07780 1.18397 0.86559 0.84638 0.76013 1.90702 1.14448 1.88135 1.52725 1.45908 1.11277 1.05398 1.72845 1.21543 0.94932 0.81320 1.01951 1.20142 0.89467 0.90584 0.91547 0.92046 1.42526 1.10855 1.65213 1.17463 1.19367 0.89289 1.26173 1.00279 0.90591 1.25280 1.01197 1.02362 0.96816 1.69786 1.36482 1.47739 1.07330 0.85492 0.81694 0.78137 0.76086 1.20537 1.23153 1.21120 1.23047 1.00465 0.93561 1.01758 1.22769 1.02534 1.03701 0.92058 1.22847 0.98741 0.97454 1.01712 1.21559 1.00856 0.89727 0.92334 1.18871 0.94070 0.94810 1.05576 0.89075 0.87852 0.91002 0.80385 0.78843 0.83560 0.84419 0.75208 0.92702 0.89752 0.79365 0.94462 0.86557 0.90482 0.89132 0.88060 0.90327 0.83111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.47 9.59 71.24 0.68 -0.78 16 2 C -0.02 -0.34 5.92 -19.60 -0.12 -0.46 16 3 C -0.18 -2.42 9.72 22.14 0.22 -2.20 16 4 C 0.14 2.40 11.14 85.04 0.95 3.35 16 5 N -0.51 -12.96 10.33 -188.46 -1.95 -14.91 16 6 C 0.13 3.61 6.61 40.37 0.27 3.88 16 7 C -0.11 -3.04 9.95 22.30 0.22 -2.82 16 8 C -0.07 -2.11 9.44 22.27 0.21 -1.90 16 9 C -0.15 -4.52 5.87 -20.10 -0.12 -4.64 16 10 C 0.56 19.04 7.77 86.76 0.67 19.71 16 11 O -0.58 -22.26 16.31 -3.91 -0.06 -22.32 16 12 N -0.70 -23.40 5.34 -466.03 -2.49 -25.89 16 13 C 0.13 4.13 5.22 86.38 0.45 4.58 16 14 C 0.19 6.73 2.86 44.99 0.13 6.86 16 15 H 0.06 2.15 8.08 -2.39 -0.02 2.13 16 16 N -0.72 -31.71 3.08 -322.94 -0.99 -32.70 16 17 C -0.22 -10.79 8.15 84.04 0.69 -10.10 16 18 H 0.08 3.63 6.91 -2.91 -0.02 3.61 16 19 C -0.06 -3.39 5.50 84.86 0.47 -2.93 16 20 N -0.96 -55.56 13.06 21.65 0.28 -55.28 16 21 Si 0.95 44.18 29.55 68.60 2.03 46.21 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 23 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 24 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 25 C -0.17 -5.38 5.70 -10.80 -0.06 -5.45 16 26 C -0.17 -6.25 9.74 30.62 0.30 -5.95 16 27 C -0.17 -5.68 9.87 30.62 0.30 -5.38 16 28 C -0.03 -0.68 8.88 22.82 0.20 -0.48 16 29 C -0.13 -3.29 5.74 -21.29 -0.12 -3.42 16 30 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.10 0.68 8.10 -2.39 -0.02 0.66 16 32 H 0.07 0.97 6.51 -2.39 -0.02 0.95 16 33 H 0.18 0.93 8.06 -2.91 -0.02 0.90 16 34 H 0.19 1.68 8.06 -2.91 -0.02 1.66 16 35 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 36 H 0.14 3.93 6.35 -2.91 -0.02 3.91 16 37 H 0.41 13.76 6.12 -92.71 -0.57 13.20 16 38 H 0.05 1.94 8.14 -2.38 -0.02 1.93 16 39 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.37 18.52 7.80 -92.71 -0.72 17.80 16 41 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 42 H 0.12 3.12 8.11 -2.38 -0.02 3.10 16 43 H 0.08 3.49 6.68 -2.39 -0.02 3.47 16 44 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 45 H 0.10 2.79 8.14 -2.38 -0.02 2.77 16 46 H 0.08 3.01 6.22 -2.39 -0.01 3.00 16 47 H 0.15 3.79 6.00 -2.91 -0.02 3.77 16 Total: -1.00 -66.49 386.74 1.88 -64.61 By element: Atomic # 1 Polarization: 48.69 SS G_CDS: -0.27 Total: 48.42 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: 5.34 Total: -8.14 kcal Atomic # 7 Polarization: -123.63 SS G_CDS: -5.15 Total: -128.78 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.06 Total: -22.32 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -66.49 1.88 -64.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713869243.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.907 kcal (2) G-P(sol) polarization free energy of solvation -66.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds