Wall clock time and date at job start Tue Mar 31 2020 22:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38623 * 120.75630 * 2 1 4 4 C 1.38563 * 119.35043 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.54791 * 180.02562 * 4 3 2 6 6 N 1.31518 * 120.90189 * 359.97438 * 4 3 2 7 7 C 1.32720 * 121.64440 * 359.77130 * 6 4 3 8 8 C 1.48173 * 119.72232 * 180.24378 * 7 6 4 9 9 O 1.21508 * 119.99800 * 180.24298 * 8 7 6 10 10 N 1.34776 * 120.00191 * 0.25136 * 8 7 6 11 11 C 1.46492 * 119.99957 * 180.02562 * 10 8 7 12 12 C 1.50709 * 109.46927 * 179.97438 * 11 10 8 13 13 C 1.38228 * 120.00007 * 269.72266 * 12 11 10 14 14 C 1.38243 * 119.99777 * 179.76677 * 13 12 11 15 15 C 1.38236 * 119.99812 * 0.48652 * 14 13 12 16 16 C 1.50695 * 119.99709 * 179.76621 * 15 14 13 17 17 N 1.46496 * 109.47510 * 270.02426 * 16 15 14 18 18 C 1.36935 * 120.00490 * 180.02562 * 17 16 15 19 19 H 1.08007 * 119.99892 * 359.97438 * 18 17 16 20 20 C 1.38807 * 120.00418 * 180.02562 * 18 17 16 21 21 N 1.31618 * 120.00145 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00305 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47018 * 359.97438 * 22 20 18 24 24 H 1.48508 * 109.47345 * 119.99728 * 22 20 18 25 25 H 1.48501 * 109.47241 * 239.99831 * 22 20 18 26 26 C 1.38229 * 120.00051 * 359.79229 * 15 14 13 27 27 C 1.38234 * 119.99618 * 89.99985 * 12 11 10 28 28 C 1.38592 * 120.75290 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47182 * 269.97789 * 1 2 3 30 30 H 1.09007 * 109.47034 * 29.97870 * 1 2 3 31 31 H 1.09000 * 109.47527 * 149.97572 * 1 2 3 32 32 H 1.08004 * 120.32625 * 359.97438 * 3 2 1 33 33 H 1.08999 * 109.47040 * 89.99803 * 5 4 3 34 34 H 1.08996 * 109.47027 * 209.99595 * 5 4 3 35 35 H 1.09005 * 109.47074 * 330.00339 * 5 4 3 36 36 H 0.97006 * 120.00011 * 359.97438 * 10 8 7 37 37 H 1.08996 * 109.46941 * 299.99033 * 11 10 8 38 38 H 1.08997 * 109.47714 * 59.99763 * 11 10 8 39 39 H 1.08002 * 120.00067 * 0.02562 * 13 12 11 40 40 H 1.07999 * 119.99540 * 180.25341 * 14 13 12 41 41 H 1.09001 * 109.47294 * 30.02441 * 16 15 14 42 42 H 1.09002 * 109.47233 * 150.02090 * 16 15 14 43 43 H 0.97006 * 120.00087 * 359.97438 * 17 16 15 44 44 H 0.96998 * 120.00889 * 180.02562 * 21 20 18 45 45 H 1.07996 * 120.00262 * 179.97438 * 26 15 14 46 46 H 1.08004 * 120.00223 * 0.02562 * 27 12 11 47 47 H 1.08002 * 120.46872 * 359.94951 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1913 0.0000 4 6 3.6012 1.1573 -0.0005 5 6 4.3763 2.4497 0.0000 6 7 4.2487 0.0125 -0.0005 7 6 3.6081 -1.1498 0.0045 8 6 4.3805 -2.4143 0.0097 9 8 3.7992 -3.4813 0.0099 10 7 5.7279 -2.3810 0.0145 11 6 6.4915 -3.6311 0.0191 12 6 7.9659 -3.3191 0.0233 13 6 8.6471 -3.1838 -1.1718 14 6 9.9986 -2.8929 -1.1680 15 6 10.6708 -2.7472 0.0311 16 6 12.1451 -2.4353 0.0353 17 7 12.9088 -3.6854 0.0400 18 6 14.2777 -3.6515 0.0448 19 1 14.7944 -2.7031 0.0448 20 6 15.0013 -4.8360 0.0487 21 7 14.3718 -5.9919 0.0481 22 14 16.8687 -4.7898 0.0546 23 1 17.3289 -3.3779 0.0536 24 1 17.3771 -5.4758 1.2697 25 1 17.3848 -5.4790 -1.1554 26 6 9.9907 -2.8882 1.2263 27 6 8.6382 -3.1740 1.2224 28 6 2.2157 -1.1910 -0.0005 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6937 2.1366 -0.0004 33 1 4.5635 2.7606 1.0278 34 1 5.3262 2.3038 -0.5142 35 1 3.7997 3.2194 -0.5130 36 1 6.1920 -1.5291 0.0141 37 1 6.2393 -4.2076 0.9091 38 1 6.2456 -4.2105 -0.8708 39 1 8.1227 -3.3012 -2.1086 40 1 10.5299 -2.7831 -2.1018 41 1 12.3970 -1.8589 -0.8549 42 1 12.3913 -1.8557 0.9251 43 1 12.4448 -4.5373 0.0403 44 1 14.8773 -6.8197 0.0512 45 1 10.5159 -2.7749 2.1631 46 1 8.1069 -3.2846 2.1562 47 1 1.6958 -2.1377 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714320504.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:26 Heat of formation + Delta-G solvation = 23.658229 kcal Electronic energy + Delta-G solvation = -26965.043442 eV Core-core repulsion = 23112.301568 eV Total energy + Delta-G solvation = -3852.741874 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.08669 -39.64626 -38.88641 -35.58609 -34.76174 -34.24012 -33.22981 -31.99499 -30.68517 -30.15352 -28.51244 -28.01730 -27.19965 -25.06199 -23.80323 -22.45884 -22.31572 -21.70944 -20.69704 -20.41574 -18.18448 -17.28954 -17.11100 -16.44939 -15.86450 -15.85977 -15.57374 -15.24603 -14.90330 -14.55445 -14.55091 -14.42149 -13.86582 -13.82415 -13.37558 -13.30650 -13.19072 -13.14659 -13.06727 -12.96733 -12.66315 -12.46314 -12.32001 -12.14114 -12.02660 -11.81701 -11.08079 -10.86497 -10.71572 -10.64280 -10.54087 -10.02989 -9.99497 -9.92473 -9.77660 -9.46496 -9.19695 -8.90794 -8.65314 -8.41425 -6.94074 -5.76582 -3.06487 0.26104 0.74068 1.42418 1.67737 2.43217 2.95071 3.43397 3.45746 3.48723 3.51286 3.67293 4.02738 4.08283 4.30530 4.51473 4.59627 4.61690 4.69193 4.84362 4.94352 4.98319 5.00822 5.10219 5.18060 5.21930 5.22470 5.34583 5.35342 5.40275 5.52825 5.57118 5.60721 5.65671 5.76883 5.78406 5.87982 6.15949 6.16359 6.19720 6.19945 6.23627 6.50813 6.59750 6.66023 6.72855 7.12449 7.18502 7.25576 7.48300 7.69332 7.95238 8.41053 9.52722 10.08933 10.44690 11.45928 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025872 B = 0.001712 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.982459 B =16349.283769 C =17110.873278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.046 4.046 3 C -0.154 4.154 4 C 0.131 3.869 5 C -0.105 4.105 6 N -0.463 5.463 7 C 0.090 3.910 8 C 0.569 3.431 9 O -0.535 6.535 10 N -0.702 5.702 11 C 0.164 3.836 12 C -0.125 4.125 13 C -0.102 4.102 14 C -0.106 4.106 15 C -0.064 4.064 16 C 0.184 3.816 17 N -0.727 5.727 18 C -0.242 4.242 19 H 0.072 0.928 20 C -0.013 4.013 21 N -0.931 5.931 22 Si 0.908 3.092 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.106 4.106 27 C -0.102 4.102 28 C -0.121 4.121 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.139 0.861 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.413 0.587 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.119 0.881 40 H 0.124 0.876 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.386 0.614 44 H 0.255 0.745 45 H 0.124 0.876 46 H 0.119 0.881 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.516 16.542 -0.069 33.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.054 4.054 3 C -0.174 4.174 4 C -0.008 4.008 5 C -0.163 4.163 6 N -0.176 5.176 7 C -0.048 4.048 8 C 0.353 3.647 9 O -0.412 6.412 10 N -0.353 5.353 11 C 0.041 3.959 12 C -0.125 4.125 13 C -0.121 4.121 14 C -0.125 4.125 15 C -0.064 4.064 16 C 0.057 3.943 17 N -0.371 5.371 18 C -0.373 4.373 19 H 0.090 0.910 20 C -0.209 4.209 21 N -0.579 5.579 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.125 4.125 27 C -0.121 4.121 28 C -0.142 4.142 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.157 0.843 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.250 0.750 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.137 0.863 40 H 0.142 0.858 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.220 0.780 44 H 0.065 0.935 45 H 0.142 0.858 46 H 0.137 0.863 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -28.811 15.783 -0.075 32.851 hybrid contribution 0.280 -0.018 0.020 0.281 sum -28.532 15.766 -0.054 32.598 Atomic orbital electron populations 1.20850 0.89567 1.03696 1.03233 1.20360 0.97183 0.92489 0.95322 1.22086 0.94790 0.98961 1.01558 1.21314 0.91200 0.93773 0.94560 1.20757 1.00558 0.91461 1.03496 1.67389 1.41066 0.97595 1.11577 1.21108 0.91660 0.91990 1.00058 1.17885 0.82376 0.87376 0.77014 1.90792 1.70042 1.30003 1.50369 1.45992 1.05494 1.10776 1.73034 1.20242 0.86867 0.85616 1.03141 1.19641 0.94268 1.04708 0.93906 1.20986 0.94528 0.99466 0.97073 1.21116 0.93839 0.99330 0.98200 1.20384 0.96889 0.96349 0.92802 1.19707 0.85042 0.90783 0.98746 1.42346 1.03111 1.02143 1.89507 1.19293 0.82379 0.92690 1.42958 0.90997 1.24762 0.98001 0.95251 1.02879 1.69683 1.34172 0.96555 1.57514 0.86100 0.85526 0.77244 0.77196 1.20511 1.21835 1.21841 1.21112 0.93778 0.99360 0.98236 1.20986 0.94564 0.99478 0.97033 1.22000 0.93769 0.99611 0.98798 0.90189 0.90753 0.90618 0.84298 0.90051 0.89993 0.90492 0.75030 0.90443 0.90449 0.86323 0.85804 0.95375 0.95382 0.78047 0.93511 0.85807 0.86326 0.83450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.46 10.06 36.01 0.36 -0.10 16 2 C -0.05 -0.32 5.91 -104.35 -0.62 -0.93 16 3 C -0.15 -0.99 9.45 -39.32 -0.37 -1.36 16 4 C 0.13 1.05 6.78 -82.60 -0.56 0.49 16 5 C -0.11 -0.55 10.17 36.01 0.37 -0.19 16 6 N -0.46 -4.77 9.45 -6.06 -0.06 -4.83 16 7 C 0.09 0.99 6.75 -83.01 -0.56 0.43 16 8 C 0.57 7.18 7.81 -12.18 -0.10 7.09 16 9 O -0.54 -8.07 16.32 5.36 0.09 -7.99 16 10 N -0.70 -8.08 5.54 -62.33 -0.35 -8.42 16 11 C 0.16 1.94 5.80 -5.19 -0.03 1.91 16 12 C -0.12 -1.62 5.25 -104.62 -0.55 -2.17 16 13 C -0.10 -1.39 9.70 -39.58 -0.38 -1.78 16 14 C -0.11 -1.68 9.70 -39.58 -0.38 -2.07 16 15 C -0.06 -1.11 5.25 -104.63 -0.55 -1.66 16 16 C 0.18 3.78 6.38 -5.20 -0.03 3.74 16 17 N -0.73 -18.73 5.59 -61.09 -0.34 -19.07 16 18 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 19 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -28.50 13.06 55.49 0.72 -27.78 16 22 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 C -0.11 -1.68 9.70 -39.58 -0.38 -2.07 16 27 C -0.10 -1.40 9.70 -39.58 -0.38 -1.78 16 28 C -0.12 -1.12 9.34 -39.06 -0.36 -1.48 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.20 8.10 -51.93 -0.42 -0.22 16 31 H 0.07 0.27 8.10 -51.93 -0.42 -0.15 16 32 H 0.14 0.50 8.06 -52.48 -0.42 0.07 16 33 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.25 8.08 -51.93 -0.42 -0.17 16 36 H 0.41 4.50 7.79 -40.82 -0.32 4.18 16 37 H 0.08 0.92 8.09 -51.93 -0.42 0.50 16 38 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 39 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 41 H 0.03 0.57 8.09 -51.93 -0.42 0.15 16 42 H 0.03 0.57 8.09 -51.93 -0.42 0.15 16 43 H 0.39 10.62 7.66 -40.82 -0.31 10.30 16 44 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 46 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 47 H 0.15 1.30 7.64 -52.49 -0.40 0.90 16 LS Contribution 404.66 15.07 6.10 6.10 Total: -1.00 -33.63 404.66 -10.54 -44.17 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -6.90 Total: 9.72 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -4.78 Total: -9.38 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: -0.02 Total: -60.10 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: 0.09 Total: -7.99 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.63 -10.54 -44.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714320504.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.832 kcal (2) G-P(sol) polarization free energy of solvation -33.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds