Wall clock time and date at job start Tue Mar 31 2020 22:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38623 * 120.75630 * 2 1 4 4 C 1.38563 * 119.35043 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.54791 * 180.02562 * 4 3 2 6 6 N 1.31518 * 120.90189 * 359.97438 * 4 3 2 7 7 C 1.32720 * 121.64440 * 359.77130 * 6 4 3 8 8 C 1.48173 * 119.72232 * 180.24378 * 7 6 4 9 9 O 1.21508 * 119.99800 * 180.24298 * 8 7 6 10 10 N 1.34776 * 120.00191 * 0.25136 * 8 7 6 11 11 C 1.46492 * 119.99957 * 180.02562 * 10 8 7 12 12 C 1.50709 * 109.46927 * 179.97438 * 11 10 8 13 13 C 1.38228 * 120.00007 * 269.72266 * 12 11 10 14 14 C 1.38243 * 119.99777 * 179.76677 * 13 12 11 15 15 C 1.38236 * 119.99812 * 0.48652 * 14 13 12 16 16 C 1.50695 * 119.99709 * 179.76621 * 15 14 13 17 17 N 1.46496 * 109.47510 * 270.02426 * 16 15 14 18 18 C 1.36935 * 120.00490 * 180.02562 * 17 16 15 19 19 H 1.08007 * 119.99892 * 359.97438 * 18 17 16 20 20 C 1.38807 * 120.00418 * 180.02562 * 18 17 16 21 21 N 1.31618 * 120.00145 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00305 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47018 * 359.97438 * 22 20 18 24 24 H 1.48508 * 109.47345 * 119.99728 * 22 20 18 25 25 H 1.48501 * 109.47241 * 239.99831 * 22 20 18 26 26 C 1.38229 * 120.00051 * 359.79229 * 15 14 13 27 27 C 1.38234 * 119.99618 * 89.99985 * 12 11 10 28 28 C 1.38592 * 120.75290 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47182 * 269.97789 * 1 2 3 30 30 H 1.09007 * 109.47034 * 29.97870 * 1 2 3 31 31 H 1.09000 * 109.47527 * 149.97572 * 1 2 3 32 32 H 1.08004 * 120.32625 * 359.97438 * 3 2 1 33 33 H 1.08999 * 109.47040 * 89.99803 * 5 4 3 34 34 H 1.08996 * 109.47027 * 209.99595 * 5 4 3 35 35 H 1.09005 * 109.47074 * 330.00339 * 5 4 3 36 36 H 0.97006 * 120.00011 * 359.97438 * 10 8 7 37 37 H 1.08996 * 109.46941 * 299.99033 * 11 10 8 38 38 H 1.08997 * 109.47714 * 59.99763 * 11 10 8 39 39 H 1.08002 * 120.00067 * 0.02562 * 13 12 11 40 40 H 1.07999 * 119.99540 * 180.25341 * 14 13 12 41 41 H 1.09001 * 109.47294 * 30.02441 * 16 15 14 42 42 H 1.09002 * 109.47233 * 150.02090 * 16 15 14 43 43 H 0.97006 * 120.00087 * 359.97438 * 17 16 15 44 44 H 0.96998 * 120.00889 * 180.02562 * 21 20 18 45 45 H 1.07996 * 120.00262 * 179.97438 * 26 15 14 46 46 H 1.08004 * 120.00223 * 0.02562 * 27 12 11 47 47 H 1.08002 * 120.46872 * 359.94951 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1913 0.0000 4 6 3.6012 1.1573 -0.0005 5 6 4.3763 2.4497 0.0000 6 7 4.2487 0.0125 -0.0005 7 6 3.6081 -1.1498 0.0045 8 6 4.3805 -2.4143 0.0097 9 8 3.7992 -3.4813 0.0099 10 7 5.7279 -2.3810 0.0145 11 6 6.4915 -3.6311 0.0191 12 6 7.9659 -3.3191 0.0233 13 6 8.6471 -3.1838 -1.1718 14 6 9.9986 -2.8929 -1.1680 15 6 10.6708 -2.7472 0.0311 16 6 12.1451 -2.4353 0.0353 17 7 12.9088 -3.6854 0.0400 18 6 14.2777 -3.6515 0.0448 19 1 14.7944 -2.7031 0.0448 20 6 15.0013 -4.8360 0.0487 21 7 14.3718 -5.9919 0.0481 22 14 16.8687 -4.7898 0.0546 23 1 17.3289 -3.3779 0.0536 24 1 17.3771 -5.4758 1.2697 25 1 17.3848 -5.4790 -1.1554 26 6 9.9907 -2.8882 1.2263 27 6 8.6382 -3.1740 1.2224 28 6 2.2157 -1.1910 -0.0005 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6937 2.1366 -0.0004 33 1 4.5635 2.7606 1.0278 34 1 5.3262 2.3038 -0.5142 35 1 3.7997 3.2194 -0.5130 36 1 6.1920 -1.5291 0.0141 37 1 6.2393 -4.2076 0.9091 38 1 6.2456 -4.2105 -0.8708 39 1 8.1227 -3.3012 -2.1086 40 1 10.5299 -2.7831 -2.1018 41 1 12.3970 -1.8589 -0.8549 42 1 12.3913 -1.8557 0.9251 43 1 12.4448 -4.5373 0.0403 44 1 14.8773 -6.8197 0.0512 45 1 10.5159 -2.7749 2.1631 46 1 8.1069 -3.2846 2.1562 47 1 1.6958 -2.1377 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714320504.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:25 Heat of formation + Delta-G solvation = 2.983147 kcal Electronic energy + Delta-G solvation = -26965.939980 eV Core-core repulsion = 23112.301568 eV Total energy + Delta-G solvation = -3853.638412 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.79641 -40.67469 -39.93823 -36.98712 -35.90075 -35.15588 -33.98678 -33.54445 -31.86923 -31.76650 -29.05791 -28.71837 -28.25173 -26.41909 -25.04922 -23.91357 -23.64546 -22.28023 -21.70737 -21.51830 -19.33481 -19.00895 -17.88144 -17.13295 -16.88737 -16.87531 -16.71064 -16.46951 -16.21688 -16.00284 -15.33195 -15.30857 -15.24884 -14.90209 -14.57406 -14.35685 -14.14270 -14.12134 -13.79641 -13.69454 -13.48367 -13.41902 -13.12336 -13.09074 -13.01139 -12.99682 -12.80176 -12.60429 -12.15154 -11.97560 -11.93176 -11.74358 -11.52972 -11.00342 -10.62108 -10.53244 -10.29868 -9.96218 -9.83303 -9.66786 -9.03948 -7.96300 -5.26812 -0.41247 0.16494 0.22043 0.49190 1.47443 1.48489 1.58864 1.61181 2.03343 2.54716 2.75965 2.82786 3.05327 3.37031 3.59435 3.63465 3.68871 3.87276 3.98369 4.02397 4.02896 4.11477 4.23671 4.25936 4.34181 4.49906 4.54460 4.61083 4.64598 4.67259 4.73739 4.77893 4.82893 4.88061 4.88675 4.98890 5.05506 5.12714 5.18281 5.24073 5.26237 5.27799 5.43705 5.47448 5.57678 5.65440 5.79494 6.04332 6.24353 6.31798 6.76717 7.03560 7.31024 8.03804 8.29122 9.27193 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025872 B = 0.001712 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.982459 B =16349.283769 C =17110.873278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.046 4.046 3 C -0.144 4.144 4 C 0.118 3.882 5 C -0.103 4.103 6 N -0.483 5.483 7 C 0.064 3.936 8 C 0.568 3.432 9 O -0.568 6.568 10 N -0.696 5.696 11 C 0.169 3.831 12 C -0.111 4.111 13 C -0.098 4.098 14 C -0.115 4.115 15 C -0.086 4.086 16 C 0.186 3.814 17 N -0.739 5.739 18 C -0.248 4.248 19 H 0.079 0.921 20 C -0.075 4.075 21 N -0.970 5.970 22 Si 0.977 3.023 23 H -0.264 1.264 24 H -0.293 1.293 25 H -0.293 1.293 26 C -0.115 4.115 27 C -0.098 4.098 28 C -0.132 4.132 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.175 0.825 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.417 0.583 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.141 0.859 40 H 0.123 0.877 41 H 0.031 0.969 42 H 0.031 0.969 43 H 0.373 0.627 44 H 0.251 0.749 45 H 0.123 0.877 46 H 0.141 0.859 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.271 18.795 -0.071 36.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.053 4.053 3 C -0.163 4.163 4 C -0.023 4.023 5 C -0.160 4.160 6 N -0.197 5.197 7 C -0.073 4.073 8 C 0.354 3.646 9 O -0.447 6.447 10 N -0.346 5.346 11 C 0.046 3.954 12 C -0.112 4.112 13 C -0.116 4.116 14 C -0.134 4.134 15 C -0.086 4.086 16 C 0.060 3.940 17 N -0.382 5.382 18 C -0.380 4.380 19 H 0.097 0.903 20 C -0.267 4.267 21 N -0.620 5.620 22 Si 0.806 3.194 23 H -0.188 1.188 24 H -0.220 1.220 25 H -0.220 1.220 26 C -0.134 4.134 27 C -0.116 4.116 28 C -0.153 4.153 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.095 0.905 32 H 0.192 0.808 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.121 0.879 36 H 0.254 0.746 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.158 0.842 40 H 0.141 0.859 41 H 0.049 0.951 42 H 0.049 0.951 43 H 0.205 0.795 44 H 0.060 0.940 45 H 0.141 0.859 46 H 0.159 0.841 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -30.565 18.097 -0.077 35.521 hybrid contribution 0.673 -0.592 0.022 0.896 sum -29.892 17.505 -0.055 34.641 Atomic orbital electron populations 1.20931 0.87256 1.04778 1.04189 1.20728 0.98778 0.91765 0.94058 1.22495 0.94259 1.00221 0.99369 1.21879 0.92439 0.93863 0.94076 1.20839 1.00207 0.90762 1.04212 1.67343 1.41807 0.98033 1.12523 1.20928 0.92177 0.91640 1.02579 1.18199 0.82494 0.87776 0.76181 1.90760 1.70604 1.31291 1.52058 1.45909 1.05327 1.10730 1.72649 1.20179 0.85922 0.85861 1.03445 1.19765 0.94789 1.03129 0.93532 1.21193 0.93706 0.98399 0.98333 1.21175 0.94802 0.99748 0.97626 1.20179 0.95312 0.98955 0.94184 1.19764 0.86793 0.88768 0.98678 1.42545 1.02815 1.03355 1.89453 1.19724 0.83793 0.92976 1.41487 0.90292 1.25619 1.02699 0.94948 1.03457 1.69844 1.35795 0.97048 1.59325 0.85020 0.79893 0.77825 0.76667 1.18823 1.21979 1.21992 1.21171 0.94739 0.99777 0.97666 1.21193 0.93743 0.98403 0.98286 1.22112 0.93330 1.00607 0.99290 0.89137 0.88754 0.90510 0.80772 0.89265 0.90985 0.87939 0.74602 0.90204 0.90216 0.84153 0.85866 0.95075 0.95079 0.79510 0.93972 0.85864 0.84148 0.83907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 10.06 71.24 0.72 0.12 16 2 C -0.05 -0.54 5.91 -19.69 -0.12 -0.66 16 3 C -0.14 -1.44 9.45 22.44 0.21 -1.23 16 4 C 0.12 1.67 6.78 42.68 0.29 1.96 16 5 C -0.10 -0.85 10.17 71.24 0.72 -0.13 16 6 N -0.48 -9.67 9.45 -173.08 -1.64 -11.31 16 7 C 0.06 1.41 6.75 41.91 0.28 1.69 16 8 C 0.57 14.47 7.81 86.88 0.68 15.15 16 9 O -0.57 -17.47 16.32 -3.74 -0.06 -17.53 16 10 N -0.70 -15.72 5.54 -469.41 -2.60 -18.32 16 11 C 0.17 3.84 5.80 85.64 0.50 4.33 16 12 C -0.11 -2.78 5.25 -19.86 -0.10 -2.88 16 13 C -0.10 -2.58 9.70 22.27 0.22 -2.36 16 14 C -0.11 -3.62 9.70 22.27 0.22 -3.40 16 15 C -0.09 -3.01 5.25 -19.87 -0.10 -3.12 16 16 C 0.19 7.72 6.38 85.63 0.55 8.27 16 17 N -0.74 -38.79 5.59 -347.19 -1.94 -40.73 16 18 C -0.25 -14.12 9.99 84.03 0.84 -13.28 16 19 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 20 C -0.07 -4.37 5.50 84.86 0.47 -3.91 16 21 N -0.97 -60.51 13.06 21.65 0.28 -60.23 16 22 Si 0.98 46.56 29.55 68.60 2.03 48.59 16 23 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 24 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 25 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 26 C -0.11 -3.62 9.70 22.27 0.22 -3.40 16 27 C -0.10 -2.57 9.70 22.27 0.22 -2.36 16 28 C -0.13 -2.40 9.34 22.61 0.21 -2.19 16 29 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.09 0.14 8.10 -2.38 -0.02 0.12 16 31 H 0.08 0.41 8.10 -2.39 -0.02 0.39 16 32 H 0.17 0.45 8.06 -2.91 -0.02 0.43 16 33 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.10 0.31 8.08 -2.38 -0.02 0.29 16 36 H 0.42 8.86 7.79 -92.70 -0.72 8.13 16 37 H 0.08 1.82 8.09 -2.39 -0.02 1.80 16 38 H 0.08 1.82 8.08 -2.39 -0.02 1.80 16 39 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 40 H 0.12 3.81 8.06 -2.91 -0.02 3.79 16 41 H 0.03 1.27 8.09 -2.39 -0.02 1.25 16 42 H 0.03 1.27 8.09 -2.39 -0.02 1.25 16 43 H 0.37 21.13 7.66 -92.70 -0.71 20.42 16 44 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 45 H 0.12 3.81 8.06 -2.91 -0.02 3.79 16 46 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 47 H 0.14 2.60 7.64 -2.91 -0.02 2.57 16 Total: -1.00 -73.65 404.66 1.64 -72.02 By element: Atomic # 1 Polarization: 35.35 SS G_CDS: -0.44 Total: 34.91 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: 6.00 Total: -7.40 kcal Atomic # 7 Polarization: -124.69 SS G_CDS: -5.90 Total: -130.58 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.06 Total: -17.53 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -73.65 1.64 -72.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714320504.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.999 kcal (2) G-P(sol) polarization free energy of solvation -73.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds