Wall clock time and date at job start Tue Mar 31 2020 22:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39226 * 119.15326 * 2 1 4 4 C 1.36642 * 119.90363 * 179.97438 * 3 2 1 5 5 C 1.40794 * 118.15004 * 0.02562 * 4 3 2 6 6 C 1.40485 * 121.24851 * 179.97438 * 5 4 3 7 7 C 1.36313 * 120.08043 * 180.02562 * 6 5 4 8 8 C 1.38917 * 121.05702 * 359.67749 * 7 6 5 9 9 C 1.38707 * 120.72654 * 0.63062 * 8 7 6 10 10 C 1.47435 * 120.32987 * 179.67676 * 9 8 7 11 11 O 1.21607 * 119.99783 * 226.93253 * 10 9 8 12 12 N 1.34772 * 120.00200 * 46.94376 * 10 9 8 13 13 C 1.47025 * 125.64706 * 355.19811 * 12 10 9 14 14 C 1.54326 * 107.26928 * 178.91310 * 13 12 10 15 15 C 1.55149 * 102.94384 * 337.80618 * 14 13 12 16 16 H 1.09005 * 111.03836 * 277.41425 * 15 14 13 17 17 C 1.53002 * 111.00834 * 153.57962 * 15 14 13 18 18 N 1.46494 * 109.47477 * 181.34921 * 17 15 14 19 19 C 1.36932 * 119.99902 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00218 * 0.02562 * 19 18 17 21 21 C 1.38817 * 119.99867 * 180.02562 * 19 18 17 22 22 N 1.31614 * 120.00106 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99990 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46965 * 179.97438 * 23 21 19 25 25 H 1.48496 * 109.46978 * 299.99796 * 23 21 19 26 26 H 1.48501 * 109.47067 * 59.99847 * 23 21 19 27 27 C 1.47423 * 125.65095 * 175.16366 * 12 10 9 28 28 C 1.41553 * 118.95129 * 359.97438 * 5 4 3 29 29 N 1.31230 * 119.15264 * 180.02562 * 2 1 3 30 30 H 1.09007 * 109.47044 * 89.99485 * 1 2 3 31 31 H 1.08994 * 109.47420 * 210.00024 * 1 2 3 32 32 H 1.08996 * 109.47148 * 330.00191 * 1 2 3 33 33 H 1.08002 * 120.04883 * 0.02562 * 3 2 1 34 34 H 1.07994 * 120.92179 * 179.97438 * 4 3 2 35 35 H 1.07998 * 119.95789 * 0.02562 * 6 5 4 36 36 H 1.08002 * 119.47406 * 179.97438 * 7 6 5 37 37 H 1.08000 * 119.63574 * 180.30217 * 8 7 6 38 38 H 1.09004 * 109.88171 * 298.32670 * 13 12 10 39 39 H 1.08997 * 109.88243 * 59.33608 * 13 12 10 40 40 H 1.09001 * 110.71421 * 219.44117 * 14 13 12 41 41 H 1.08997 * 110.72053 * 96.17348 * 14 13 12 42 42 H 1.09000 * 109.47100 * 61.34756 * 17 15 14 43 43 H 1.08999 * 109.46755 * 301.35559 * 17 15 14 44 44 H 0.97000 * 119.99805 * 0.02562 * 18 17 15 45 45 H 0.97002 * 119.99919 * 0.02562 * 22 21 19 46 46 H 1.09004 * 110.36720 * 85.32140 * 27 12 10 47 47 H 1.09001 * 110.46132 * 323.04955 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2159 0.0000 4 6 3.5515 1.2338 0.0005 5 6 4.2320 0.0012 0.0005 6 6 5.6357 -0.0564 0.0005 7 6 6.2700 -1.2629 0.0000 8 6 5.5502 -2.4510 0.0061 9 6 4.1631 -2.4394 -0.0002 10 6 3.4080 -3.7056 -0.0007 11 8 2.4823 -3.8611 -0.7740 12 7 3.7433 -4.6906 0.8558 13 6 4.8948 -4.6762 1.7698 14 6 4.8613 -5.9955 2.5698 15 6 3.3751 -6.4282 2.4644 16 1 2.7645 -5.9150 3.2074 17 6 3.2349 -7.9460 2.5974 18 7 1.8251 -8.3201 2.4611 19 6 1.4546 -9.6356 2.5452 20 1 2.2017 -10.3974 2.7124 21 6 0.1188 -9.9902 2.4155 22 7 -0.7917 -9.0618 2.2122 23 14 -0.3867 -11.7848 2.5310 24 1 -1.8577 -11.8966 2.3611 25 1 0.2956 -12.5608 1.4645 26 1 0.0001 -12.3235 3.8597 27 6 3.0159 -5.9608 1.0319 28 6 3.4788 -1.1973 0.0005 29 7 2.1463 -1.1461 -0.0005 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6323 2.1436 0.0004 34 1 4.0943 2.1674 0.0001 35 1 6.2128 0.8564 0.0009 36 1 7.3495 -1.2957 -0.0005 37 1 6.0763 -3.3942 0.0105 38 1 5.8209 -4.6126 1.1984 39 1 4.8189 -3.8265 2.4483 40 1 5.1401 -5.8232 3.6094 41 1 5.5131 -6.7401 2.1130 42 1 3.6014 -8.2605 3.5746 43 1 3.8177 -8.4344 1.8164 44 1 1.1542 -7.6359 2.3105 45 1 -0.5293 -8.1299 2.1526 46 1 3.3505 -6.6944 0.2984 47 1 1.9414 -5.8000 0.9434 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714353409.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:08 Heat of formation + Delta-G solvation = 37.445504 kcal Electronic energy + Delta-G solvation = -28658.015126 eV Core-core repulsion = 24805.871114 eV Total energy + Delta-G solvation = -3852.144013 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.30701 -39.79750 -37.71608 -37.25664 -34.86627 -33.78679 -32.46301 -32.20359 -30.66883 -30.15157 -28.49663 -28.16610 -25.55116 -24.32942 -23.69577 -22.85603 -22.64486 -22.02517 -20.11094 -19.55138 -18.57600 -17.67563 -17.09301 -16.79597 -16.43306 -15.98354 -15.42444 -15.08285 -14.92391 -14.59162 -14.35740 -14.09468 -13.79847 -13.69987 -13.57280 -13.32904 -13.21314 -13.13386 -12.83981 -12.55767 -12.43484 -12.33061 -12.13212 -11.83228 -11.63340 -11.60789 -10.99336 -10.87781 -10.75959 -10.65024 -10.51058 -10.35555 -9.97304 -9.93016 -9.47426 -9.12119 -9.00668 -8.84279 -8.59824 -8.45139 -6.96241 -6.04777 -3.04936 -0.08583 0.49130 1.52036 2.47285 2.84169 3.10613 3.55115 3.59350 3.76915 3.81060 3.88123 4.16242 4.32860 4.38666 4.49918 4.56658 4.63166 4.67920 4.73487 4.83989 4.90343 4.99383 5.04012 5.22275 5.30315 5.36330 5.40694 5.42580 5.54549 5.58531 5.62812 5.67310 5.72168 5.81853 5.84526 5.87767 5.92696 5.96488 5.98647 6.01612 6.18027 6.26044 6.30612 6.45634 6.47343 6.64381 6.77945 7.59112 7.77543 7.84677 8.28902 8.81214 9.27946 10.14347 10.28931 11.43694 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015553 B = 0.002559 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.874990 B =10938.015052 C =12334.245923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.164 3.836 3 C -0.171 4.171 4 C -0.055 4.055 5 C -0.114 4.114 6 C -0.076 4.076 7 C -0.124 4.124 8 C -0.071 4.071 9 C -0.095 4.095 10 C 0.577 3.423 11 O -0.508 6.508 12 N -0.616 5.616 13 C 0.099 3.901 14 C -0.124 4.124 15 C -0.107 4.107 16 H 0.083 0.917 17 C 0.171 3.829 18 N -0.744 5.744 19 C -0.334 4.334 20 H 0.064 0.936 21 C -0.045 4.045 22 N -0.942 5.942 23 Si 1.081 2.919 24 H -0.285 1.285 25 H -0.295 1.295 26 H -0.296 1.296 27 C 0.119 3.881 28 C 0.167 3.833 29 N -0.456 5.456 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.139 0.861 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.025 0.975 43 H 0.023 0.977 44 H 0.368 0.632 45 H 0.256 0.744 46 H 0.072 0.928 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.478 24.856 -2.613 29.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.011 3.989 3 C -0.191 4.191 4 C -0.081 4.081 5 C -0.117 4.117 6 C -0.095 4.095 7 C -0.142 4.142 8 C -0.091 4.091 9 C -0.099 4.099 10 C 0.364 3.636 11 O -0.383 6.383 12 N -0.351 5.351 13 C -0.024 4.024 14 C -0.163 4.163 15 C -0.127 4.127 16 H 0.101 0.899 17 C 0.043 3.957 18 N -0.390 5.390 19 C -0.465 4.465 20 H 0.082 0.918 21 C -0.243 4.243 22 N -0.588 5.588 23 Si 0.912 3.088 24 H -0.210 1.210 25 H -0.223 1.223 26 H -0.223 1.223 27 C -0.002 4.002 28 C 0.044 3.956 29 N -0.165 5.165 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.157 0.843 34 H 0.159 0.841 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.156 0.844 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.042 0.958 43 H 0.041 0.959 44 H 0.201 0.799 45 H 0.067 0.933 46 H 0.090 0.910 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 14.414 22.736 -3.118 27.100 hybrid contribution 1.801 2.105 0.046 2.771 sum 16.214 24.841 -3.072 29.823 Atomic orbital electron populations 1.20823 0.88354 1.03894 1.03603 1.21663 0.97551 0.87923 0.91729 1.21775 0.95070 0.99369 1.02887 1.21455 0.94482 0.96993 0.95179 1.18782 0.94812 0.93853 1.04208 1.21115 0.92492 0.98673 0.97230 1.20817 1.00542 0.91835 1.01047 1.21535 0.92298 0.99436 0.95810 1.19793 0.93407 0.92323 1.04374 1.17506 0.83556 0.82003 0.80528 1.90840 1.28859 1.80219 1.38336 1.48462 1.29093 1.18317 1.39261 1.22182 0.88814 0.99113 0.92268 1.22648 0.97420 0.95736 1.00455 1.22609 0.95455 0.98436 0.96198 0.89884 1.20514 0.87833 0.89194 0.98125 1.42376 1.01978 1.05993 1.88663 1.20005 0.94815 0.84318 1.47331 0.91772 1.25790 0.91572 1.06651 1.00292 1.70868 1.34549 1.01054 1.52288 0.83237 0.76101 0.73756 0.75748 1.21032 1.22273 1.22309 1.22282 0.97827 0.83466 0.96640 1.18500 0.89285 0.91299 0.96521 1.67972 1.07971 1.28561 1.11983 0.89852 0.89860 0.90457 0.84323 0.84111 0.84904 0.84789 0.84385 0.91493 0.91611 0.89933 0.90154 0.95752 0.95937 0.79921 0.93314 0.90993 0.90141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.15 36.01 0.37 -0.67 16 2 C 0.16 1.96 6.78 -82.48 -0.56 1.40 16 3 C -0.17 -1.49 9.64 -39.79 -0.38 -1.87 16 4 C -0.06 -0.45 9.90 -39.19 -0.39 -0.84 16 5 C -0.11 -1.21 5.74 -106.82 -0.61 -1.82 16 6 C -0.08 -0.59 9.75 -39.43 -0.38 -0.98 16 7 C -0.12 -0.94 9.93 -40.02 -0.40 -1.34 16 8 C -0.07 -0.71 8.50 -39.16 -0.33 -1.04 16 9 C -0.10 -1.35 5.45 -104.61 -0.57 -1.92 16 10 C 0.58 10.10 7.15 -12.52 -0.09 10.01 16 11 O -0.51 -11.10 16.77 5.27 0.09 -11.01 16 12 N -0.62 -9.66 3.33 -171.78 -0.57 -10.23 16 13 C 0.10 1.13 5.62 -3.06 -0.02 1.11 16 14 C -0.12 -1.46 6.42 -24.90 -0.16 -1.62 16 15 C -0.11 -1.75 3.10 -88.47 -0.27 -2.02 16 16 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 17 C 0.17 3.45 5.71 -4.04 -0.02 3.43 16 18 N -0.74 -19.26 5.45 -59.91 -0.33 -19.58 16 19 C -0.33 -9.67 9.99 -15.06 -0.15 -9.82 16 20 H 0.06 1.82 7.83 -52.49 -0.41 1.40 16 21 C -0.05 -1.36 5.50 -17.43 -0.10 -1.45 16 22 N -0.94 -30.15 13.70 55.49 0.76 -29.39 16 23 Si 1.08 26.59 29.92 -169.99 -5.09 21.50 16 24 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.30 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.30 -6.91 7.11 56.52 0.40 -6.50 16 27 C 0.12 2.13 6.06 -2.53 -0.02 2.11 16 28 C 0.17 2.40 6.59 -84.58 -0.56 1.84 16 29 N -0.46 -7.20 9.24 -7.01 -0.06 -7.26 16 30 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.08 0.50 8.07 -51.93 -0.42 0.08 16 33 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 34 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 35 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 36 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 37 H 0.14 1.14 5.86 -52.49 -0.31 0.83 16 38 H 0.07 0.60 5.97 -51.93 -0.31 0.28 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.08 0.88 8.04 -51.93 -0.42 0.46 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.02 0.46 8.10 -51.93 -0.42 0.04 16 44 H 0.37 9.85 6.37 -40.82 -0.26 9.59 16 45 H 0.26 8.11 6.77 -40.82 -0.28 7.83 16 46 H 0.07 1.33 8.00 -51.93 -0.42 0.92 16 47 H 0.08 1.66 8.09 -51.93 -0.42 1.24 16 LS Contribution 385.89 15.07 5.82 5.82 Total: -1.00 -38.59 385.89 -10.71 -49.31 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -6.68 Total: 6.35 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -4.65 Total: -5.50 kcal Atomic # 7 Polarization: -66.26 SS G_CDS: -0.20 Total: -66.47 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.09 Total: -11.01 kcal Atomic # 14 Polarization: 26.59 SS G_CDS: -5.09 Total: 21.50 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -38.59 -10.71 -49.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714353409.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.752 kcal (2) G-P(sol) polarization free energy of solvation -38.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds