Wall clock time and date at job start Tue Mar 31 2020 22:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39440 * 119.54150 * 2 1 4 4 C 1.35999 * 121.08250 * 179.97438 * 3 2 1 5 5 C 1.40823 * 119.73949 * 0.04365 * 4 3 2 6 6 N 1.33269 * 120.98979 * 180.26009 * 5 4 3 7 7 C 1.31883 * 121.29868 * 180.24039 * 6 5 4 8 8 C 1.48276 * 119.24105 * 179.75504 * 7 6 5 9 9 O 1.21500 * 120.00018 * 179.72549 * 8 7 6 10 10 N 1.34776 * 119.99698 * 359.72658 * 8 7 6 11 11 C 1.47020 * 125.65045 * 0.02562 * 10 8 7 12 12 C 1.54329 * 107.27028 * 181.01143 * 11 10 8 13 13 C 1.55157 * 102.93961 * 22.19446 * 12 11 10 14 14 H 1.09001 * 111.00713 * 82.60816 * 13 12 11 15 15 C 1.52997 * 111.00186 * 206.41981 * 13 12 11 16 16 N 1.46506 * 109.47289 * 185.00117 * 15 13 12 17 17 C 1.36930 * 120.00258 * 180.02562 * 16 15 13 18 18 H 1.08004 * 119.99823 * 0.02562 * 17 16 15 19 19 C 1.38815 * 120.00439 * 179.97438 * 17 16 15 20 20 N 1.31618 * 119.99225 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00268 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47411 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.46826 * 120.00327 * 21 19 17 24 24 H 1.48495 * 109.47136 * 239.99966 * 21 19 17 25 25 C 1.47420 * 125.64559 * 179.97438 * 10 8 7 26 26 C 1.40283 * 121.51781 * 359.47719 * 7 6 5 27 27 C 1.36504 * 119.81389 * 0.25089 * 26 7 6 28 28 C 1.40755 * 118.24874 * 0.02562 * 27 26 7 29 29 C 1.36133 * 119.54620 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.46958 * 269.97859 * 1 2 3 31 31 H 1.08998 * 109.47638 * 29.97529 * 1 2 3 32 32 H 1.08997 * 109.47150 * 149.97780 * 1 2 3 33 33 H 1.08001 * 119.45777 * 0.02562 * 3 2 1 34 34 H 1.08000 * 120.12431 * 180.02562 * 4 3 2 35 35 H 1.08997 * 109.88128 * 61.59645 * 11 10 8 36 36 H 1.08992 * 109.88438 * 300.42884 * 11 10 8 37 37 H 1.08996 * 110.72329 * 263.82912 * 12 11 10 38 38 H 1.09001 * 110.86587 * 140.62837 * 12 11 10 39 39 H 1.09001 * 109.47289 * 64.99989 * 15 13 12 40 40 H 1.09004 * 109.47261 * 305.00245 * 15 13 12 41 41 H 0.97001 * 119.99251 * 0.02562 * 16 15 13 42 42 H 0.97000 * 119.99950 * 179.97438 * 20 19 17 43 43 H 1.09000 * 110.37115 * 37.08031 * 25 10 8 44 44 H 1.09007 * 110.37174 * 274.75483 * 25 10 8 45 45 H 1.08001 * 120.08726 * 180.27996 * 26 7 6 46 46 H 1.07997 * 120.87493 * 179.97438 * 27 26 7 47 47 H 1.07993 * 120.17373 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.2131 0.0000 4 6 3.5540 1.2497 0.0005 5 6 4.2852 0.0462 0.0001 6 7 5.6178 0.0529 0.0058 7 6 6.3087 -1.0704 0.0008 8 6 7.7902 -1.0097 0.0019 9 8 8.4403 -2.0361 0.0024 10 7 8.4156 0.1842 0.0025 11 6 7.7550 1.4976 0.0027 12 6 8.8654 2.5690 -0.0226 13 6 10.0787 1.7982 -0.6067 14 1 10.0321 1.7631 -1.6951 15 6 11.3978 2.4147 -0.1369 16 7 12.5161 1.7392 -0.7998 17 6 13.8031 2.1233 -0.5333 18 1 13.9939 2.9240 0.1660 19 6 14.8628 1.4830 -1.1611 20 7 14.6302 0.5069 -2.0129 21 14 16.6184 2.0074 -0.7980 22 1 16.6095 3.1188 0.1869 23 1 17.3730 0.8572 -0.2389 24 1 17.2686 2.4629 -2.0530 25 6 9.8755 0.3893 0.0042 26 6 5.6742 -2.3216 0.0001 27 6 4.3109 -2.3912 -0.0004 28 6 3.5824 -1.1868 -0.0008 29 6 2.1783 -1.1843 -0.0005 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6382 2.1389 0.0004 34 1 4.0707 2.1981 0.0009 35 1 7.1525 1.6094 0.9041 36 1 7.1250 1.5958 -0.8813 37 1 9.0825 2.9234 0.9850 38 1 8.5882 3.4003 -0.6709 39 1 11.4902 2.2961 0.9427 40 1 11.4132 3.4752 -0.3884 41 1 12.3447 1.0199 -1.4276 42 1 15.3706 0.0597 -2.4519 43 1 10.3653 -0.3653 -0.6112 44 1 10.2618 0.3583 1.0230 45 1 6.2627 -3.2271 0.0005 46 1 3.8047 -3.3452 -0.0013 47 1 1.6337 -2.1169 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714355280.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:24 Heat of formation + Delta-G solvation = 36.657590 kcal Electronic energy + Delta-G solvation = -28084.095135 eV Core-core repulsion = 24231.916956 eV Total energy + Delta-G solvation = -3852.178179 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.36070 -39.82520 -37.96800 -37.23959 -34.67906 -33.93697 -32.69114 -31.96984 -30.63058 -30.34780 -28.73209 -27.82573 -25.58669 -24.60309 -23.81937 -22.86809 -22.47111 -21.84877 -20.21300 -19.77016 -18.30057 -17.69585 -17.13420 -16.90471 -16.13877 -15.86238 -15.46099 -15.01147 -14.72841 -14.56673 -14.49740 -14.36698 -13.82353 -13.68090 -13.52770 -13.47397 -13.30196 -13.12020 -12.82530 -12.61338 -12.52620 -12.13427 -11.94908 -11.84156 -11.60609 -11.58504 -11.22102 -10.95189 -10.83777 -10.63273 -10.54981 -10.33869 -10.26703 -9.94700 -9.66217 -9.59359 -9.08601 -8.84751 -8.59611 -8.46145 -6.88703 -5.72251 -3.01374 -0.13716 0.33429 1.57682 2.16636 2.93450 3.05435 3.46650 3.51799 3.54432 3.74601 3.80514 4.14596 4.28768 4.32276 4.46252 4.59817 4.62002 4.69184 4.81142 4.88400 4.95134 5.05307 5.07395 5.11260 5.14412 5.36149 5.39411 5.49863 5.57141 5.60668 5.63235 5.67219 5.71562 5.89418 5.90966 5.97625 6.05827 6.06916 6.11542 6.14135 6.17445 6.32174 6.39672 6.43654 6.52292 6.74457 6.87781 7.36796 7.58975 7.74054 8.15165 8.46057 9.57311 10.14772 10.49211 11.50573 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027620 B = 0.002026 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.514103 B =13815.397890 C =14642.906555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.076 4.076 3 C -0.104 4.104 4 C -0.079 4.079 5 C 0.117 3.883 6 N -0.435 5.435 7 C 0.123 3.877 8 C 0.575 3.425 9 O -0.531 6.531 10 N -0.595 5.595 11 C 0.119 3.881 12 C -0.131 4.131 13 C -0.105 4.105 14 H 0.085 0.915 15 C 0.165 3.835 16 N -0.733 5.733 17 C -0.240 4.240 18 H 0.071 0.929 19 C -0.014 4.014 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C 0.114 3.886 26 C -0.121 4.121 27 C -0.066 4.066 28 C -0.083 4.083 29 C -0.105 4.105 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.131 0.869 34 H 0.140 0.860 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.022 0.978 40 H 0.025 0.975 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.085 0.915 44 H 0.074 0.926 45 H 0.151 0.849 46 H 0.145 0.855 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.999 -0.586 4.847 33.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.076 4.076 3 C -0.124 4.124 4 C -0.098 4.098 5 C -0.006 4.006 6 N -0.147 5.147 7 C -0.030 4.030 8 C 0.361 3.639 9 O -0.407 6.407 10 N -0.327 5.327 11 C -0.003 4.003 12 C -0.170 4.170 13 C -0.125 4.125 14 H 0.104 0.896 15 C 0.037 3.963 16 N -0.378 5.378 17 C -0.371 4.371 18 H 0.089 0.911 19 C -0.210 4.210 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.008 4.008 26 C -0.142 4.142 27 C -0.092 4.092 28 C -0.086 4.086 29 C -0.124 4.124 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.149 0.851 34 H 0.157 0.843 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.040 0.960 40 H 0.042 0.958 41 H 0.218 0.782 42 H 0.064 0.936 43 H 0.103 0.897 44 H 0.092 0.908 45 H 0.169 0.831 46 H 0.163 0.837 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -32.148 -0.255 4.932 32.525 hybrid contribution 0.523 -0.784 -0.074 0.946 sum -31.625 -1.039 4.859 32.013 Atomic orbital electron populations 1.20865 0.90679 1.03189 1.02685 1.19767 0.96585 0.92993 0.98261 1.20838 0.93986 0.97879 0.99665 1.20876 0.93534 0.96919 0.98464 1.18915 0.89090 0.92957 0.99685 1.68145 1.07055 1.29491 1.10006 1.21356 0.94295 0.89554 0.97843 1.17527 0.85482 0.82848 0.78013 1.90817 1.65843 1.33141 1.50893 1.48399 1.08518 1.05606 1.70162 1.22099 0.94682 0.81045 1.02523 1.22765 0.94582 0.97439 1.02172 1.22586 0.95503 0.93575 1.00795 0.89649 1.20593 0.85221 0.95010 0.95470 1.42388 1.01159 1.42180 1.52037 1.19263 0.83178 1.14209 1.20452 0.91099 1.24756 0.97956 0.98694 0.99632 1.69674 1.30438 1.25981 1.31933 0.86115 0.85144 0.77600 0.77316 1.20573 1.21889 1.21913 1.22437 0.78414 0.98050 1.01866 1.21769 0.95108 0.98934 0.98377 1.21442 0.93639 0.97825 0.96271 1.18955 0.94809 0.94045 1.00746 1.20840 0.92126 0.98355 1.01057 0.90777 0.91157 0.91272 0.85082 0.84259 0.90976 0.90826 0.90518 0.90054 0.96001 0.95760 0.78215 0.93552 0.89661 0.90787 0.83088 0.83707 0.85127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.43 9.98 36.00 0.36 -0.07 16 2 C -0.08 -0.48 5.85 -104.93 -0.61 -1.09 16 3 C -0.10 -0.68 9.58 -39.94 -0.38 -1.06 16 4 C -0.08 -0.67 9.99 -39.41 -0.39 -1.06 16 5 C 0.12 1.26 6.61 -84.86 -0.56 0.70 16 6 N -0.44 -5.42 6.76 -7.54 -0.05 -5.47 16 7 C 0.12 1.68 6.73 -82.95 -0.56 1.12 16 8 C 0.58 9.48 7.84 -12.13 -0.10 9.38 16 9 O -0.53 -10.32 16.54 5.37 0.09 -10.23 16 10 N -0.59 -9.33 3.33 -171.48 -0.57 -9.90 16 11 C 0.12 1.51 5.39 -3.06 -0.02 1.49 16 12 C -0.13 -1.63 6.42 -24.89 -0.16 -1.79 16 13 C -0.11 -1.71 3.05 -88.48 -0.27 -1.98 16 14 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 15 C 0.17 3.27 5.72 -4.04 -0.02 3.25 16 16 N -0.73 -18.74 5.55 -59.90 -0.33 -19.08 16 17 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 18 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 19 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 20 N -0.93 -28.79 13.06 55.49 0.72 -28.06 16 21 Si 0.91 22.78 29.55 -169.99 -5.02 17.75 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 C 0.11 1.97 6.32 -2.53 -0.02 1.96 16 26 C -0.12 -1.37 9.54 -39.44 -0.38 -1.75 16 27 C -0.07 -0.58 9.88 -39.26 -0.39 -0.97 16 28 C -0.08 -0.79 5.75 -106.72 -0.61 -1.40 16 29 C -0.11 -0.74 9.37 -39.52 -0.37 -1.11 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.20 8.08 -51.93 -0.42 -0.22 16 32 H 0.07 0.21 8.07 -51.93 -0.42 -0.21 16 33 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 34 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 35 H 0.07 0.86 7.52 -51.93 -0.39 0.47 16 36 H 0.07 0.91 7.41 -51.93 -0.38 0.52 16 37 H 0.08 0.90 8.04 -51.93 -0.42 0.48 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.02 0.44 7.96 -51.93 -0.41 0.03 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.38 10.41 7.67 -40.82 -0.31 10.09 16 42 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 43 H 0.08 1.69 8.04 -51.93 -0.42 1.27 16 44 H 0.07 1.31 7.91 -51.93 -0.41 0.90 16 45 H 0.15 1.63 7.60 -52.49 -0.40 1.23 16 46 H 0.15 0.80 8.06 -52.49 -0.42 0.37 16 47 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 LS Contribution 388.84 15.07 5.86 5.86 Total: -1.00 -34.39 388.84 -10.94 -45.33 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -6.91 Total: 5.65 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -4.72 Total: -1.86 kcal Atomic # 7 Polarization: -62.28 SS G_CDS: -0.23 Total: -62.51 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.39 -10.94 -45.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714355280.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.988 kcal (2) G-P(sol) polarization free energy of solvation -34.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds