Wall clock time and date at job start Tue Mar 31 2020 22:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39440 * 119.54150 * 2 1 4 4 C 1.35999 * 121.08250 * 179.97438 * 3 2 1 5 5 C 1.40823 * 119.73949 * 0.04365 * 4 3 2 6 6 N 1.33269 * 120.98979 * 180.26009 * 5 4 3 7 7 C 1.31883 * 121.29868 * 180.24039 * 6 5 4 8 8 C 1.48276 * 119.24105 * 179.75504 * 7 6 5 9 9 O 1.21500 * 120.00018 * 179.72549 * 8 7 6 10 10 N 1.34776 * 119.99698 * 359.72658 * 8 7 6 11 11 C 1.47020 * 125.65045 * 0.02562 * 10 8 7 12 12 C 1.54329 * 107.27028 * 181.01143 * 11 10 8 13 13 C 1.55157 * 102.93961 * 22.19446 * 12 11 10 14 14 H 1.09001 * 111.00713 * 82.60816 * 13 12 11 15 15 C 1.52997 * 111.00186 * 206.41981 * 13 12 11 16 16 N 1.46506 * 109.47289 * 185.00117 * 15 13 12 17 17 C 1.36930 * 120.00258 * 180.02562 * 16 15 13 18 18 H 1.08004 * 119.99823 * 0.02562 * 17 16 15 19 19 C 1.38815 * 120.00439 * 179.97438 * 17 16 15 20 20 N 1.31618 * 119.99225 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00268 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47411 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.46826 * 120.00327 * 21 19 17 24 24 H 1.48495 * 109.47136 * 239.99966 * 21 19 17 25 25 C 1.47420 * 125.64559 * 179.97438 * 10 8 7 26 26 C 1.40283 * 121.51781 * 359.47719 * 7 6 5 27 27 C 1.36504 * 119.81389 * 0.25089 * 26 7 6 28 28 C 1.40755 * 118.24874 * 0.02562 * 27 26 7 29 29 C 1.36133 * 119.54620 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.46958 * 269.97859 * 1 2 3 31 31 H 1.08998 * 109.47638 * 29.97529 * 1 2 3 32 32 H 1.08997 * 109.47150 * 149.97780 * 1 2 3 33 33 H 1.08001 * 119.45777 * 0.02562 * 3 2 1 34 34 H 1.08000 * 120.12431 * 180.02562 * 4 3 2 35 35 H 1.08997 * 109.88128 * 61.59645 * 11 10 8 36 36 H 1.08992 * 109.88438 * 300.42884 * 11 10 8 37 37 H 1.08996 * 110.72329 * 263.82912 * 12 11 10 38 38 H 1.09001 * 110.86587 * 140.62837 * 12 11 10 39 39 H 1.09001 * 109.47289 * 64.99989 * 15 13 12 40 40 H 1.09004 * 109.47261 * 305.00245 * 15 13 12 41 41 H 0.97001 * 119.99251 * 0.02562 * 16 15 13 42 42 H 0.97000 * 119.99950 * 179.97438 * 20 19 17 43 43 H 1.09000 * 110.37115 * 37.08031 * 25 10 8 44 44 H 1.09007 * 110.37174 * 274.75483 * 25 10 8 45 45 H 1.08001 * 120.08726 * 180.27996 * 26 7 6 46 46 H 1.07997 * 120.87493 * 179.97438 * 27 26 7 47 47 H 1.07993 * 120.17373 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.2131 0.0000 4 6 3.5540 1.2497 0.0005 5 6 4.2852 0.0462 0.0001 6 7 5.6178 0.0529 0.0058 7 6 6.3087 -1.0704 0.0008 8 6 7.7902 -1.0097 0.0019 9 8 8.4403 -2.0361 0.0024 10 7 8.4156 0.1842 0.0025 11 6 7.7550 1.4976 0.0027 12 6 8.8654 2.5690 -0.0226 13 6 10.0787 1.7982 -0.6067 14 1 10.0321 1.7631 -1.6951 15 6 11.3978 2.4147 -0.1369 16 7 12.5161 1.7392 -0.7998 17 6 13.8031 2.1233 -0.5333 18 1 13.9939 2.9240 0.1660 19 6 14.8628 1.4830 -1.1611 20 7 14.6302 0.5069 -2.0129 21 14 16.6184 2.0074 -0.7980 22 1 16.6095 3.1188 0.1869 23 1 17.3730 0.8572 -0.2389 24 1 17.2686 2.4629 -2.0530 25 6 9.8755 0.3893 0.0042 26 6 5.6742 -2.3216 0.0001 27 6 4.3109 -2.3912 -0.0004 28 6 3.5824 -1.1868 -0.0008 29 6 2.1783 -1.1843 -0.0005 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6382 2.1389 0.0004 34 1 4.0707 2.1981 0.0009 35 1 7.1525 1.6094 0.9041 36 1 7.1250 1.5958 -0.8813 37 1 9.0825 2.9234 0.9850 38 1 8.5882 3.4003 -0.6709 39 1 11.4902 2.2961 0.9427 40 1 11.4132 3.4752 -0.3884 41 1 12.3447 1.0199 -1.4276 42 1 15.3706 0.0597 -2.4519 43 1 10.3653 -0.3653 -0.6112 44 1 10.2618 0.3583 1.0230 45 1 6.2627 -3.2271 0.0005 46 1 3.8047 -3.3452 -0.0013 47 1 1.6337 -2.1169 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714355280.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:23 Heat of formation + Delta-G solvation = 15.874200 kcal Electronic energy + Delta-G solvation = -28084.996371 eV Core-core repulsion = 24231.916956 eV Total energy + Delta-G solvation = -3853.079414 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.16890 -40.94701 -39.06119 -38.18823 -36.47838 -34.72718 -33.96735 -33.07437 -31.96225 -31.27978 -30.06699 -28.65506 -27.04107 -25.59941 -25.01285 -24.00624 -23.27975 -23.04564 -21.49265 -20.95530 -19.23908 -19.01521 -18.54849 -17.84746 -17.39066 -16.91628 -16.62057 -16.41281 -15.90940 -15.40410 -15.34335 -15.25971 -15.10357 -15.06251 -14.65692 -14.46584 -14.25320 -14.07783 -13.96136 -13.83876 -13.52847 -13.20417 -13.09344 -12.96484 -12.78238 -12.45317 -12.40002 -12.21336 -12.17166 -12.11967 -11.88293 -11.68961 -11.65695 -11.57490 -11.43705 -10.95714 -10.53361 -9.89315 -9.65266 -9.18823 -9.00265 -7.94767 -5.24190 -0.88396 -0.37268 0.89501 1.31342 1.46929 1.48520 1.58580 1.75092 2.12289 2.56040 2.83522 3.03606 3.37104 3.42062 3.56510 3.65059 3.66635 3.75903 3.81691 3.86656 3.98889 4.15884 4.19633 4.33092 4.33542 4.41161 4.45976 4.58677 4.66420 4.70408 4.75998 4.83396 4.87098 4.90372 4.92648 4.99569 5.01328 5.07707 5.08811 5.17636 5.22950 5.28399 5.32449 5.41496 5.45094 5.50768 5.57651 5.85878 6.26917 6.32872 6.54355 6.92273 7.32834 8.08824 8.30951 9.29258 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027620 B = 0.002026 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.514103 B =13815.397890 C =14642.906555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.071 4.071 3 C -0.094 4.094 4 C -0.095 4.095 5 C 0.092 3.908 6 N -0.441 5.441 7 C 0.096 3.904 8 C 0.568 3.432 9 O -0.576 6.576 10 N -0.598 5.598 11 C 0.125 3.875 12 C -0.116 4.116 13 C -0.095 4.095 14 H 0.075 0.925 15 C 0.165 3.835 16 N -0.748 5.748 17 C -0.243 4.243 18 H 0.081 0.919 19 C -0.081 4.081 20 N -0.972 5.972 21 Si 0.976 3.024 22 H -0.262 1.262 23 H -0.296 1.296 24 H -0.293 1.293 25 C 0.117 3.883 26 C -0.141 4.141 27 C -0.050 4.050 28 C -0.093 4.093 29 C -0.111 4.111 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.160 0.840 34 H 0.148 0.852 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.108 0.892 39 H 0.026 0.974 40 H 0.038 0.962 41 H 0.371 0.629 42 H 0.250 0.750 43 H 0.048 0.952 44 H 0.066 0.934 45 H 0.145 0.855 46 H 0.181 0.819 47 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.735 1.334 5.706 37.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.071 4.071 3 C -0.114 4.114 4 C -0.114 4.114 5 C -0.032 4.032 6 N -0.153 5.153 7 C -0.056 4.056 8 C 0.356 3.644 9 O -0.456 6.456 10 N -0.329 5.329 11 C 0.003 3.997 12 C -0.154 4.154 13 C -0.115 4.115 14 H 0.094 0.906 15 C 0.038 3.962 16 N -0.391 5.391 17 C -0.374 4.374 18 H 0.099 0.901 19 C -0.273 4.273 20 N -0.623 5.623 21 Si 0.805 3.195 22 H -0.186 1.186 23 H -0.223 1.223 24 H -0.220 1.220 25 C -0.005 4.005 26 C -0.162 4.162 27 C -0.076 4.076 28 C -0.095 4.095 29 C -0.129 4.129 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.178 0.822 34 H 0.166 0.834 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.109 0.891 38 H 0.127 0.873 39 H 0.044 0.956 40 H 0.055 0.945 41 H 0.203 0.797 42 H 0.059 0.941 43 H 0.067 0.933 44 H 0.084 0.916 45 H 0.163 0.837 46 H 0.198 0.802 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -35.924 1.727 5.823 36.434 hybrid contribution 1.401 -1.312 -0.307 1.944 sum -34.523 0.415 5.516 34.964 Atomic orbital electron populations 1.20943 0.88413 1.04347 1.03646 1.20197 0.98229 0.92576 0.96103 1.21241 0.93379 0.99363 0.97389 1.21070 0.94405 0.96485 0.99403 1.19340 0.88585 0.94637 1.00613 1.67994 1.08210 1.29014 1.10072 1.20947 0.92421 0.91042 1.01221 1.18129 0.87006 0.82324 0.76940 1.90766 1.67222 1.34578 1.52995 1.48502 1.07772 1.06765 1.69819 1.22216 0.94682 0.79388 1.03395 1.22778 0.91910 0.97483 1.03220 1.22400 0.95609 0.93285 1.00188 0.90612 1.20759 0.85027 0.95233 0.95135 1.42647 1.02007 1.42250 1.52195 1.19719 0.84451 1.13672 1.19590 0.90149 1.25637 1.02239 0.99239 1.00144 1.69849 1.31276 1.27642 1.33581 0.85027 0.79863 0.77369 0.77226 1.18649 1.22343 1.22007 1.22214 0.79742 0.97894 1.00666 1.21769 0.96353 0.97887 1.00181 1.21808 0.92462 0.99363 0.93957 1.19248 0.96131 0.93655 1.00428 1.21154 0.91007 1.00048 1.00687 0.89723 0.89994 0.90260 0.82241 0.83416 0.89776 0.90218 0.89119 0.87341 0.95565 0.94451 0.79710 0.94118 0.93329 0.91570 0.83684 0.80156 0.82485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.34 9.98 71.23 0.71 0.37 16 2 C -0.07 -0.63 5.85 -20.07 -0.12 -0.74 16 3 C -0.09 -0.90 9.58 22.04 0.21 -0.69 16 4 C -0.10 -1.40 9.99 22.38 0.22 -1.17 16 5 C 0.09 1.89 6.61 40.47 0.27 2.15 16 6 N -0.44 -11.02 6.76 -177.76 -1.20 -12.22 16 7 C 0.10 2.74 6.73 42.31 0.28 3.03 16 8 C 0.57 20.17 7.84 86.91 0.68 20.85 16 9 O -0.58 -24.56 16.54 -3.71 -0.06 -24.62 16 10 N -0.60 -19.70 3.33 -814.73 -2.71 -22.41 16 11 C 0.12 3.08 5.39 86.73 0.47 3.55 16 12 C -0.12 -2.67 6.42 31.78 0.20 -2.46 16 13 C -0.10 -3.14 3.05 -9.40 -0.03 -3.17 16 14 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 15 C 0.16 6.53 5.72 86.38 0.49 7.02 16 16 N -0.75 -39.19 5.55 -343.44 -1.91 -41.10 16 17 C -0.24 -13.87 9.99 84.04 0.84 -13.03 16 18 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 19 C -0.08 -4.79 5.50 84.86 0.47 -4.32 16 20 N -0.97 -62.05 13.06 21.65 0.28 -61.77 16 21 Si 0.98 47.45 29.55 68.60 2.03 49.48 16 22 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 24 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 25 C 0.12 4.34 6.32 86.85 0.55 4.88 16 26 C -0.14 -3.33 9.54 22.36 0.21 -3.12 16 27 C -0.05 -0.83 9.88 22.48 0.22 -0.61 16 28 C -0.09 -1.58 5.75 -21.22 -0.12 -1.70 16 29 C -0.11 -1.20 9.37 22.31 0.21 -0.99 16 30 H 0.08 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.08 0.10 8.08 -2.39 -0.02 0.08 16 32 H 0.08 0.12 8.07 -2.39 -0.02 0.10 16 33 H 0.16 0.60 8.06 -2.91 -0.02 0.57 16 34 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 35 H 0.08 1.92 7.52 -2.39 -0.02 1.90 16 36 H 0.08 1.90 7.41 -2.39 -0.02 1.88 16 37 H 0.09 1.89 8.04 -2.39 -0.02 1.87 16 38 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.03 1.04 7.96 -2.39 -0.02 1.02 16 40 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 41 H 0.37 21.10 7.67 -92.71 -0.71 20.39 16 42 H 0.25 15.44 8.31 -92.71 -0.77 14.67 16 43 H 0.05 2.12 8.04 -2.39 -0.02 2.10 16 44 H 0.07 2.50 7.91 -2.38 -0.02 2.48 16 45 H 0.15 3.45 7.60 -2.91 -0.02 3.42 16 46 H 0.18 1.52 8.06 -2.91 -0.02 1.49 16 47 H 0.16 0.82 8.06 -2.91 -0.02 0.79 16 Total: -1.00 -78.61 388.84 2.48 -76.13 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: 0.27 Total: 26.66 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 5.78 Total: 9.85 kcal Atomic # 7 Polarization: -131.96 SS G_CDS: -5.53 Total: -137.50 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.06 Total: -24.62 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.48 kcal Total: -78.61 2.48 -76.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714355280.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.000 kcal (2) G-P(sol) polarization free energy of solvation -78.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds