Wall clock time and date at job start Tue Mar 31 2020 23:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38222 * 120.42007 * 2 1 4 4 N 1.31851 * 120.76696 * 179.97438 * 3 2 1 5 5 C 1.31886 * 121.72078 * 0.02562 * 4 3 2 6 6 C 1.38176 * 120.76970 * 359.97438 * 5 4 3 7 7 C 1.38630 * 120.41650 * 179.97438 * 2 1 3 8 8 C 1.50699 * 120.79166 * 359.97438 * 7 2 1 9 9 C 1.50698 * 109.47003 * 85.02467 * 8 7 2 10 10 O 1.21279 * 120.00192 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99357 * 179.97438 * 9 8 7 12 12 C 1.46499 * 119.99492 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47316 * 179.97438 * 12 11 9 14 14 H 1.09000 * 109.46693 * 65.00482 * 13 12 11 15 15 N 1.46497 * 109.47303 * 305.00972 * 13 12 11 16 16 C 1.36944 * 119.99700 * 304.54700 * 15 13 12 17 17 H 1.08000 * 119.99822 * 4.79857 * 16 15 13 18 18 C 1.38811 * 120.00081 * 184.79266 * 16 15 13 19 19 N 1.31622 * 120.00034 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00115 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47239 * 90.00229 * 20 18 16 22 22 H 1.48497 * 109.47036 * 210.00245 * 20 18 16 23 23 H 1.48498 * 109.46946 * 330.00348 * 20 18 16 24 24 C 1.50695 * 109.47469 * 185.00110 * 13 12 11 25 25 C 1.38237 * 120.00144 * 332.92423 * 24 13 12 26 26 C 1.38231 * 120.00007 * 179.78819 * 25 24 13 27 27 C 1.38235 * 120.00108 * 0.43554 * 26 25 24 28 28 C 1.38239 * 119.99752 * 359.81466 * 27 26 25 29 29 C 1.38231 * 119.99965 * 153.19015 * 24 13 12 30 30 H 1.09004 * 109.46886 * 270.02011 * 1 2 3 31 31 H 1.09000 * 109.47222 * 30.01608 * 1 2 3 32 32 H 1.08993 * 109.47206 * 150.01776 * 1 2 3 33 33 H 1.08002 * 119.61729 * 0.02562 * 3 2 1 34 34 H 1.08010 * 119.61740 * 179.97438 * 5 4 3 35 35 H 1.08004 * 120.42306 * 179.97438 * 6 5 4 36 36 H 1.09003 * 109.47135 * 205.02568 * 8 7 2 37 37 H 1.09000 * 109.46585 * 325.02267 * 8 7 2 38 38 H 0.96998 * 120.00502 * 0.02562 * 11 9 8 39 39 H 1.08994 * 109.47580 * 300.00335 * 12 11 9 40 40 H 1.09007 * 109.47045 * 60.00433 * 12 11 9 41 41 H 0.96997 * 120.00876 * 124.55155 * 15 13 12 42 42 H 0.96993 * 120.00396 * 179.97438 * 19 18 16 43 43 H 1.08006 * 119.99976 * 359.97438 * 25 24 13 44 44 H 1.07999 * 120.00146 * 180.27026 * 26 25 24 45 45 H 1.08000 * 119.99969 * 179.83938 * 27 26 25 46 46 H 1.08000 * 119.99799 * 179.97438 * 28 27 26 47 47 H 1.08000 * 120.00227 * 359.97438 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1999 0.0005 5 6 4.2256 0.0823 0.0005 6 6 3.5948 -1.1471 0.0005 7 6 2.2089 -1.1955 0.0005 8 6 1.4831 -2.5162 0.0017 9 6 1.1327 -2.8980 -1.4134 10 8 1.4422 -2.1697 -2.3324 11 7 0.4761 -4.0494 -1.6576 12 6 0.1349 -4.4204 -3.0332 13 6 -0.6008 -5.7619 -3.0322 14 1 -1.5555 -5.6522 -2.5179 15 7 0.2135 -6.7649 -2.3414 16 6 1.4971 -7.0062 -2.7530 17 1 1.9355 -6.4044 -3.5353 18 6 2.2348 -8.0243 -2.1647 19 7 1.7004 -8.7580 -1.2115 20 14 3.9860 -8.3531 -2.7256 21 1 4.9267 -7.5398 -1.9139 22 1 4.2994 -9.7940 -2.5508 23 1 4.1239 -7.9866 -4.1581 24 6 -0.8432 -6.2030 -4.4526 25 6 -0.9491 -5.2624 -5.4600 26 6 -1.1671 -5.6673 -6.7635 27 6 -1.2881 -7.0124 -7.0584 28 6 -1.1873 -7.9528 -6.0502 29 6 -0.9651 -7.5481 -4.7473 30 1 -0.3633 0.0004 1.0277 31 1 -0.3634 0.8898 -0.5141 32 1 -0.3633 -0.8901 -0.5135 33 1 1.6675 2.1276 0.0004 34 1 5.3047 0.1285 0.0005 35 1 4.1738 -2.0588 0.0001 36 1 2.1244 -3.2828 0.4367 37 1 0.5704 -2.4286 0.5911 38 1 0.2288 -4.6321 -0.9226 39 1 -0.5069 -3.6540 -3.4677 40 1 1.0474 -4.5073 -3.6230 41 1 -0.1565 -7.2581 -1.5926 42 1 2.2157 -9.4697 -0.8007 43 1 -0.8586 -4.2112 -5.2290 44 1 -1.2456 -4.9326 -7.5513 45 1 -1.4610 -7.3286 -8.0766 46 1 -1.2823 -9.0037 -6.2806 47 1 -0.8862 -8.2828 -3.9597 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714836399.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:06 Heat of formation + Delta-G solvation = 13.827165 kcal Electronic energy + Delta-G solvation = -28774.942464 eV Core-core repulsion = 24921.774283 eV Total energy + Delta-G solvation = -3853.168181 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.53896 -40.59213 -39.92342 -37.43453 -35.31857 -35.06735 -33.65339 -33.30071 -31.80534 -31.07805 -30.22082 -28.45110 -27.79909 -26.16246 -24.17890 -23.63537 -23.10151 -22.58954 -21.42358 -21.05214 -19.30234 -18.17267 -17.82866 -17.69071 -17.46504 -16.88187 -16.43991 -16.21162 -15.99972 -15.76320 -15.68948 -15.49080 -15.11427 -14.89307 -14.39014 -14.29378 -14.14417 -14.02334 -13.77787 -13.59486 -13.55721 -13.44863 -13.27105 -13.03075 -12.90153 -12.84466 -12.53402 -12.25261 -12.09197 -11.91901 -11.81709 -11.51592 -11.07386 -10.96486 -10.42572 -10.38824 -9.90628 -9.79037 -9.65462 -9.47804 -8.99822 -7.92349 -5.19162 0.21280 0.26227 0.61002 0.68334 1.41314 1.45816 1.50436 1.70780 2.35303 2.55522 2.89870 3.04010 3.41316 3.51748 3.62685 3.80920 3.88309 4.00820 4.03246 4.05782 4.09182 4.22029 4.27889 4.34714 4.41314 4.43835 4.50691 4.52139 4.57505 4.69533 4.76195 4.81023 4.85728 4.91355 4.93396 5.08508 5.13734 5.22419 5.26459 5.32702 5.41760 5.55165 5.59670 5.72898 5.77446 5.81619 5.96360 6.27492 6.31464 6.69147 7.02834 7.34473 7.39902 8.04813 8.33666 9.29185 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010430 B = 0.003314 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2683.937541 B = 8445.907525 C =10100.357954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.128 4.128 3 C 0.084 3.916 4 N -0.508 5.508 5 C 0.078 3.922 6 C -0.170 4.170 7 C -0.034 4.034 8 C -0.100 4.100 9 C 0.513 3.487 10 O -0.586 6.586 11 N -0.698 5.698 12 C 0.128 3.872 13 C 0.200 3.800 14 H 0.098 0.902 15 N -0.713 5.713 16 C -0.203 4.203 17 H 0.055 0.945 18 C -0.053 4.053 19 N -0.955 5.955 20 Si 0.939 3.061 21 H -0.292 1.292 22 H -0.297 1.297 23 H -0.285 1.285 24 C -0.096 4.096 25 C -0.133 4.133 26 C -0.131 4.131 27 C -0.132 4.132 28 C -0.139 4.139 29 C -0.100 4.100 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.176 0.824 34 H 0.173 0.827 35 H 0.140 0.860 36 H 0.117 0.883 37 H 0.136 0.864 38 H 0.411 0.589 39 H 0.072 0.928 40 H 0.033 0.967 41 H 0.382 0.618 42 H 0.249 0.751 43 H 0.129 0.871 44 H 0.141 0.859 45 H 0.141 0.859 46 H 0.127 0.873 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.490 12.828 1.075 14.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.130 4.130 3 C -0.073 4.073 4 N -0.217 5.217 5 C -0.078 4.078 6 C -0.190 4.190 7 C -0.043 4.043 8 C -0.140 4.140 9 C 0.300 3.700 10 O -0.467 6.467 11 N -0.349 5.349 12 C 0.002 3.998 13 C 0.091 3.909 14 H 0.116 0.884 15 N -0.352 5.352 16 C -0.335 4.335 17 H 0.073 0.927 18 C -0.246 4.246 19 N -0.606 5.606 20 Si 0.771 3.229 21 H -0.220 1.220 22 H -0.223 1.223 23 H -0.211 1.211 24 C -0.098 4.098 25 C -0.152 4.152 26 C -0.149 4.149 27 C -0.150 4.150 28 C -0.157 4.157 29 C -0.118 4.118 30 H 0.114 0.886 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.193 0.807 34 H 0.190 0.810 35 H 0.158 0.842 36 H 0.135 0.865 37 H 0.154 0.846 38 H 0.247 0.753 39 H 0.090 0.910 40 H 0.051 0.949 41 H 0.215 0.785 42 H 0.058 0.942 43 H 0.146 0.854 44 H 0.159 0.841 45 H 0.159 0.841 46 H 0.145 0.855 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.668 14.101 0.343 15.602 hybrid contribution 0.918 -2.063 0.156 2.263 sum -5.751 12.038 0.498 13.351 Atomic orbital electron populations 1.20784 0.88553 1.03509 1.03681 1.21047 0.98903 0.93204 0.99803 1.23027 0.89800 0.98373 0.96117 1.67646 1.09227 1.31997 1.12846 1.22994 1.01279 0.87432 0.96122 1.22262 0.94967 1.00366 1.01382 1.19836 0.93800 0.94610 0.96007 1.20723 1.03863 0.95301 0.94067 1.20753 0.76997 0.80776 0.91444 1.90680 1.55172 1.53147 1.47687 1.45717 1.57633 1.21669 1.09838 1.21590 0.98667 0.96514 0.83033 1.19511 0.94062 0.87652 0.89699 0.88431 1.42362 1.11311 1.44527 1.36996 1.19003 0.89907 1.10318 1.14268 0.92724 1.25071 1.00430 0.99044 1.00099 1.69719 1.37324 1.24012 1.29540 0.85660 0.83098 0.76500 0.77621 1.21964 1.22338 1.21139 1.20681 0.98387 0.93811 0.96951 1.21299 1.01093 0.99559 0.93209 1.21376 1.00364 0.96522 0.96600 1.21362 1.00783 0.93179 0.99667 1.21358 1.01002 1.00261 0.93046 1.20994 0.98077 0.95977 0.96770 0.88561 0.89988 0.92241 0.80684 0.81019 0.84173 0.86500 0.84639 0.75286 0.90996 0.94889 0.78483 0.94228 0.85360 0.84075 0.84075 0.85540 0.87757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.82 9.30 71.24 0.66 -1.16 16 2 C -0.13 -2.94 5.90 -19.77 -0.12 -3.05 16 3 C 0.08 1.96 10.86 84.69 0.92 2.88 16 4 N -0.51 -13.64 10.36 -195.84 -2.03 -15.67 16 5 C 0.08 1.94 11.18 84.67 0.95 2.89 16 6 C -0.17 -4.36 9.80 22.36 0.22 -4.14 16 7 C -0.03 -0.86 4.41 -19.67 -0.09 -0.95 16 8 C -0.10 -2.29 5.19 29.10 0.15 -2.13 16 9 C 0.51 15.78 7.15 87.66 0.63 16.41 16 10 O -0.59 -22.68 16.03 -3.03 -0.05 -22.73 16 11 N -0.70 -21.10 5.39 -463.06 -2.49 -23.59 16 12 C 0.13 4.24 3.88 86.38 0.34 4.58 16 13 C 0.20 6.72 3.26 44.24 0.14 6.86 16 14 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 15 N -0.71 -29.64 3.82 -326.51 -1.25 -30.89 16 16 C -0.20 -10.00 8.63 84.03 0.72 -9.27 16 17 H 0.05 2.86 6.91 -2.91 -0.02 2.84 16 18 C -0.05 -2.81 5.50 84.86 0.47 -2.35 16 19 N -0.96 -52.77 13.06 21.65 0.28 -52.48 16 20 Si 0.94 44.91 29.55 68.60 2.03 46.93 16 21 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 22 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 23 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 24 C -0.10 -3.28 5.19 -19.87 -0.10 -3.39 16 25 C -0.13 -4.02 9.14 22.27 0.20 -3.82 16 26 C -0.13 -3.51 10.05 22.27 0.22 -3.29 16 27 C -0.13 -3.56 10.05 22.27 0.22 -3.34 16 28 C -0.14 -4.34 10.05 22.27 0.22 -4.12 16 29 C -0.10 -3.64 9.00 22.27 0.20 -3.44 16 30 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.08 1.18 8.09 -2.39 -0.02 1.16 16 32 H 0.06 1.13 6.35 -2.39 -0.02 1.11 16 33 H 0.18 3.00 8.06 -2.91 -0.02 2.98 16 34 H 0.17 3.36 8.06 -2.91 -0.02 3.34 16 35 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 36 H 0.12 2.48 8.07 -2.39 -0.02 2.46 16 37 H 0.14 2.21 7.10 -2.39 -0.02 2.19 16 38 H 0.41 11.42 8.14 -92.71 -0.75 10.66 16 39 H 0.07 2.16 6.85 -2.39 -0.02 2.15 16 40 H 0.03 1.34 7.14 -2.38 -0.02 1.32 16 41 H 0.38 16.89 8.04 -92.71 -0.75 16.15 16 42 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 43 H 0.13 3.50 6.22 -2.91 -0.02 3.49 16 44 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 45 H 0.14 2.91 8.06 -2.91 -0.02 2.88 16 46 H 0.13 3.49 8.06 -2.91 -0.02 3.46 16 47 H 0.10 4.30 7.50 -2.91 -0.02 4.28 16 Total: -1.00 -67.53 391.44 1.96 -65.57 By element: Atomic # 1 Polarization: 44.18 SS G_CDS: -0.49 Total: 43.68 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: 5.97 Total: -10.82 kcal Atomic # 7 Polarization: -117.15 SS G_CDS: -5.49 Total: -122.64 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.05 Total: -22.73 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -67.53 1.96 -65.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714836399.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.392 kcal (2) G-P(sol) polarization free energy of solvation -67.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds