Wall clock time and date at job start Tue Mar 31 2020 23:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38225 * 120.41966 * 2 1 4 4 N 1.31857 * 120.76545 * 179.97438 * 3 2 1 5 5 C 1.31880 * 121.72507 * 359.97438 * 4 3 2 6 6 C 1.38187 * 120.76732 * 359.74655 * 5 4 3 7 7 C 1.38624 * 120.42089 * 179.97438 * 2 1 3 8 8 C 1.50706 * 120.78819 * 0.02562 * 7 2 1 9 9 C 1.50704 * 109.46914 * 84.99799 * 8 7 2 10 10 O 1.21272 * 120.00142 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99490 * 179.97438 * 9 8 7 12 12 C 1.46498 * 119.99614 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47049 * 179.97438 * 12 11 9 14 14 H 1.08999 * 109.47670 * 294.99674 * 13 12 11 15 15 N 1.46506 * 109.47253 * 55.00005 * 13 12 11 16 16 C 1.36931 * 119.99939 * 205.00086 * 15 13 12 17 17 H 1.08000 * 120.00644 * 359.97438 * 16 15 13 18 18 C 1.38815 * 119.99715 * 179.97438 * 16 15 13 19 19 N 1.31621 * 119.99673 * 179.72262 * 18 16 15 20 20 Si 1.86795 * 120.00115 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47274 * 89.99913 * 20 18 16 22 22 H 1.48505 * 109.47015 * 209.99478 * 20 18 16 23 23 H 1.48498 * 109.47362 * 329.99904 * 20 18 16 24 24 C 1.50706 * 109.47251 * 174.99464 * 13 12 11 25 25 C 1.38225 * 120.00399 * 279.72776 * 24 13 12 26 26 C 1.38238 * 120.00138 * 179.80481 * 25 24 13 27 27 C 1.38232 * 119.99643 * 0.40670 * 26 25 24 28 28 C 1.38234 * 120.00369 * 359.84917 * 27 26 25 29 29 C 1.38233 * 119.99894 * 359.95792 * 28 27 26 30 30 H 1.09001 * 109.47095 * 270.02037 * 1 2 3 31 31 H 1.08999 * 109.47133 * 30.01957 * 1 2 3 32 32 H 1.08998 * 109.47197 * 150.01790 * 1 2 3 33 33 H 1.08000 * 119.61658 * 359.97438 * 3 2 1 34 34 H 1.07999 * 119.62100 * 179.97438 * 5 4 3 35 35 H 1.07997 * 120.42280 * 180.25853 * 6 5 4 36 36 H 1.08997 * 109.46947 * 324.99997 * 8 7 2 37 37 H 1.09000 * 109.46503 * 204.99693 * 8 7 2 38 38 H 0.96998 * 120.00503 * 359.97438 * 11 9 8 39 39 H 1.08997 * 109.47312 * 60.00223 * 12 11 9 40 40 H 1.08997 * 109.47437 * 299.99742 * 12 11 9 41 41 H 0.97000 * 119.99307 * 24.99880 * 15 13 12 42 42 H 0.97000 * 120.00043 * 180.02562 * 19 18 16 43 43 H 1.08000 * 120.00179 * 359.97438 * 25 24 13 44 44 H 1.08002 * 120.00077 * 180.22577 * 26 25 24 45 45 H 1.08003 * 119.99862 * 179.83315 * 27 26 25 46 46 H 1.07997 * 120.00377 * 179.97438 * 28 27 26 47 47 H 1.07995 * 120.00096 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5255 1.1999 0.0005 5 6 4.2257 0.0824 0.0015 6 6 3.5949 -1.1471 0.0074 7 6 2.2090 -1.1954 0.0005 8 6 1.4831 -2.5162 0.0005 9 6 1.1332 -2.8970 -1.4150 10 8 1.4431 -2.1681 -2.3333 11 7 0.4768 -4.0483 -1.6603 12 6 0.1371 -4.4188 -3.0363 13 6 -0.5988 -5.7602 -3.0364 14 1 0.0729 -6.5432 -2.6845 15 7 -1.7618 -5.6793 -2.1492 16 6 -2.2697 -6.8168 -1.5806 17 1 -1.8132 -7.7737 -1.7865 18 6 -3.3713 -6.7400 -0.7396 19 7 -3.8628 -7.8341 -0.1974 20 14 -4.1614 -5.0852 -0.3839 21 1 -5.2215 -4.8166 -1.3885 22 1 -4.7605 -5.1045 0.9748 23 1 -3.1304 -4.0188 -0.4552 24 6 -1.0561 -6.0822 -4.4358 25 6 -2.2032 -5.4983 -4.9397 26 6 -2.6204 -5.7906 -6.2248 27 6 -1.8951 -6.6734 -7.0029 28 6 -0.7509 -7.2615 -6.4971 29 6 -0.3315 -6.9661 -5.2135 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3633 -0.8901 -0.5135 33 1 1.6675 2.1276 -0.0004 34 1 5.3047 0.1286 0.0015 35 1 4.1738 -2.0588 0.0124 36 1 0.5702 -2.4290 0.5896 37 1 2.1243 -3.2830 0.4352 38 1 0.2299 -4.6318 -0.9259 39 1 1.0502 -4.5057 -3.6252 40 1 -0.5042 -3.6522 -3.4713 41 1 -2.1720 -4.8199 -1.9645 42 1 -4.6328 -7.7805 0.3900 43 1 -2.7720 -4.8115 -4.3304 44 1 -3.5147 -5.3315 -6.6198 45 1 -2.2225 -6.9039 -8.0060 46 1 -0.1845 -7.9515 -7.1049 47 1 0.5627 -7.4252 -4.8185 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714836401.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:11 Heat of formation + Delta-G solvation = 31.872245 kcal Electronic energy + Delta-G solvation = -28570.378349 eV Core-core repulsion = 24717.992662 eV Total energy + Delta-G solvation = -3852.385687 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.67196 -39.47887 -38.82523 -36.17031 -34.44926 -33.74994 -32.56278 -32.10025 -30.55600 -30.07689 -29.39595 -27.63691 -26.95772 -23.86972 -22.99967 -22.69256 -22.03814 -21.76997 -20.31296 -19.98073 -18.01719 -17.08959 -16.91094 -16.76000 -16.33317 -15.60691 -15.48418 -15.21608 -14.83721 -14.70552 -14.43739 -14.25650 -13.77180 -13.58103 -13.38015 -13.08492 -12.99869 -12.99451 -12.86361 -12.77088 -12.71210 -12.44789 -12.24661 -12.10277 -11.52992 -11.41223 -11.12018 -10.95760 -10.83117 -10.64091 -10.26128 -10.02918 -9.74072 -9.57410 -9.50738 -9.18060 -8.98944 -8.89906 -8.50737 -8.30526 -7.50813 -5.92079 -3.31134 1.03018 1.11194 1.76131 1.82191 2.69353 3.21396 3.26588 3.29052 3.34201 3.74730 4.19626 4.31305 4.39824 4.43145 4.56495 4.80500 4.85687 4.91748 4.99025 5.17816 5.23141 5.25529 5.29151 5.30922 5.31520 5.37361 5.45284 5.48104 5.52584 5.60778 5.64665 5.68478 5.83914 5.90909 5.96049 5.97461 6.02711 6.22096 6.25846 6.36685 6.49002 6.59495 6.60514 6.84314 6.89214 7.12900 7.41346 7.66329 7.80979 7.86675 8.25258 8.31869 9.01158 9.72685 9.90164 11.25580 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010178 B = 0.003252 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2750.459158 B = 8607.927355 C =10299.893390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.119 4.119 3 C 0.096 3.904 4 N -0.486 5.486 5 C 0.089 3.911 6 C -0.157 4.157 7 C -0.018 4.018 8 C -0.110 4.110 9 C 0.514 3.486 10 O -0.541 6.541 11 N -0.717 5.717 12 C 0.119 3.881 13 C 0.205 3.795 14 H 0.074 0.926 15 N -0.739 5.739 16 C -0.249 4.249 17 H 0.092 0.908 18 C 0.013 3.987 19 N -0.927 5.927 20 Si 0.879 3.121 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.277 1.277 24 C -0.081 4.081 25 C -0.088 4.088 26 C -0.127 4.127 27 C -0.132 4.132 28 C -0.127 4.127 29 C -0.116 4.116 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.153 0.847 34 H 0.154 0.846 35 H 0.133 0.867 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.411 0.589 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.363 0.637 42 H 0.261 0.739 43 H 0.117 0.883 44 H 0.114 0.886 45 H 0.113 0.887 46 H 0.114 0.886 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.027 10.441 -2.533 15.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.121 4.121 3 C -0.061 4.061 4 N -0.194 5.194 5 C -0.067 4.067 6 C -0.177 4.177 7 C -0.027 4.027 8 C -0.150 4.150 9 C 0.299 3.701 10 O -0.418 6.418 11 N -0.369 5.369 12 C -0.006 4.006 13 C 0.094 3.906 14 H 0.092 0.908 15 N -0.381 5.381 16 C -0.378 4.378 17 H 0.110 0.890 18 C -0.184 4.184 19 N -0.574 5.574 20 Si 0.709 3.291 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.203 1.203 24 C -0.084 4.084 25 C -0.106 4.106 26 C -0.145 4.145 27 C -0.150 4.150 28 C -0.145 4.145 29 C -0.135 4.135 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.170 0.830 34 H 0.171 0.829 35 H 0.151 0.849 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.248 0.752 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.197 0.803 42 H 0.071 0.929 43 H 0.135 0.865 44 H 0.132 0.868 45 H 0.131 0.869 46 H 0.132 0.868 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 11.630 11.504 -3.081 16.646 hybrid contribution -1.471 -0.237 0.545 1.586 sum 10.159 11.267 -2.536 15.381 Atomic orbital electron populations 1.20772 0.90303 1.03618 1.02456 1.20755 0.97528 0.93600 1.00247 1.22592 0.89912 0.97239 0.96322 1.67622 1.08331 1.31482 1.11985 1.22641 1.00184 0.87624 0.96293 1.21993 0.94324 0.99797 1.01555 1.19576 0.93503 0.93800 0.95799 1.20739 1.02713 0.95525 0.96023 1.20279 0.78035 0.81232 0.90556 1.90719 1.53704 1.51282 1.46120 1.46001 1.57932 1.22608 1.10365 1.21630 0.99447 0.96935 0.82575 1.19438 0.89581 0.94502 0.87065 0.90777 1.42813 1.33777 1.06974 1.54546 1.19010 1.10198 0.87202 1.21424 0.89017 1.24643 0.97994 0.96233 0.99482 1.69689 1.26083 1.26104 1.35493 0.86663 0.79797 0.84802 0.77853 1.21020 1.21636 1.20298 1.20825 0.95183 0.95933 0.96508 1.20906 0.95864 0.99381 0.94460 1.21090 0.99650 0.98927 0.94801 1.20999 0.96127 0.98314 0.99543 1.21010 0.97217 1.00320 0.95974 1.21006 0.99880 0.98412 0.94197 0.90698 0.90976 0.91228 0.82964 0.82902 0.84893 0.87270 0.87393 0.75240 0.91098 0.91633 0.80332 0.92883 0.86500 0.86800 0.86932 0.86796 0.86549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 9.30 36.01 0.33 -0.84 16 2 C -0.12 -1.41 5.90 -104.48 -0.62 -2.02 16 3 C 0.10 1.13 10.86 -17.55 -0.19 0.94 16 4 N -0.49 -6.17 10.36 -13.25 -0.14 -6.31 16 5 C 0.09 0.99 11.18 -17.55 -0.20 0.79 16 6 C -0.16 -1.71 9.80 -39.44 -0.39 -2.09 16 7 C -0.02 -0.22 4.41 -104.31 -0.46 -0.68 16 8 C -0.11 -1.18 5.19 -29.03 -0.15 -1.33 16 9 C 0.51 7.18 7.15 -10.98 -0.08 7.11 16 10 O -0.54 -9.44 16.03 5.56 0.09 -9.35 16 11 N -0.72 -9.99 5.39 -60.30 -0.32 -10.31 16 12 C 0.12 1.78 5.21 -4.04 -0.02 1.76 16 13 C 0.20 3.43 2.65 -69.08 -0.18 3.25 16 14 H 0.07 1.25 7.94 -51.93 -0.41 0.84 16 15 N -0.74 -14.98 3.59 -54.55 -0.20 -15.17 16 16 C -0.25 -6.26 10.40 -15.06 -0.16 -6.42 16 17 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 18 C 0.01 0.35 5.50 -17.43 -0.10 0.26 16 19 N -0.93 -27.32 13.97 55.49 0.78 -26.55 16 20 Si 0.88 20.28 27.74 -169.99 -4.71 15.57 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.28 -5.83 6.52 56.52 0.37 -5.46 16 24 C -0.08 -1.37 4.92 -104.62 -0.52 -1.88 16 25 C -0.09 -1.51 9.33 -39.59 -0.37 -1.87 16 26 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 27 C -0.13 -1.86 10.05 -39.59 -0.40 -2.26 16 28 C -0.13 -1.79 10.05 -39.58 -0.40 -2.19 16 29 C -0.12 -1.77 9.67 -39.58 -0.38 -2.16 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 32 H 0.07 0.81 6.35 -51.93 -0.33 0.48 16 33 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 36 H 0.11 1.05 7.10 -51.93 -0.37 0.68 16 37 H 0.11 0.90 8.07 -51.93 -0.42 0.48 16 38 H 0.41 5.58 8.14 -40.82 -0.33 5.25 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.36 7.37 5.66 -40.82 -0.23 7.14 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.12 2.05 7.71 -52.49 -0.40 1.65 16 44 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 45 H 0.11 1.30 8.06 -52.48 -0.42 0.87 16 46 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 47 H 0.12 1.55 8.04 -52.49 -0.42 1.13 16 LS Contribution 395.67 15.07 5.96 5.96 Total: -1.00 -32.57 395.67 -9.94 -42.52 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: -6.74 Total: 15.63 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -4.66 Total: -11.98 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: 0.12 Total: -58.34 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.09 Total: -9.35 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.71 Total: 15.57 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.57 -9.94 -42.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714836401.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.388 kcal (2) G-P(sol) polarization free energy of solvation -32.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds