Wall clock time and date at job start Tue Mar 31 2020 23:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38225 * 120.41966 * 2 1 4 4 N 1.31857 * 120.76545 * 179.97438 * 3 2 1 5 5 C 1.31880 * 121.72507 * 359.97438 * 4 3 2 6 6 C 1.38187 * 120.76732 * 359.74655 * 5 4 3 7 7 C 1.38624 * 120.42089 * 179.97438 * 2 1 3 8 8 C 1.50706 * 120.78819 * 0.02562 * 7 2 1 9 9 C 1.50704 * 109.46914 * 84.99799 * 8 7 2 10 10 O 1.21272 * 120.00142 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99490 * 179.97438 * 9 8 7 12 12 C 1.46498 * 119.99614 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47049 * 179.97438 * 12 11 9 14 14 H 1.08999 * 109.47670 * 294.99674 * 13 12 11 15 15 N 1.46506 * 109.47253 * 55.00005 * 13 12 11 16 16 C 1.36931 * 119.99939 * 205.00086 * 15 13 12 17 17 H 1.08000 * 120.00644 * 359.97438 * 16 15 13 18 18 C 1.38815 * 119.99715 * 179.97438 * 16 15 13 19 19 N 1.31621 * 119.99673 * 179.72262 * 18 16 15 20 20 Si 1.86795 * 120.00115 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47274 * 89.99913 * 20 18 16 22 22 H 1.48505 * 109.47015 * 209.99478 * 20 18 16 23 23 H 1.48498 * 109.47362 * 329.99904 * 20 18 16 24 24 C 1.50706 * 109.47251 * 174.99464 * 13 12 11 25 25 C 1.38225 * 120.00399 * 279.72776 * 24 13 12 26 26 C 1.38238 * 120.00138 * 179.80481 * 25 24 13 27 27 C 1.38232 * 119.99643 * 0.40670 * 26 25 24 28 28 C 1.38234 * 120.00369 * 359.84917 * 27 26 25 29 29 C 1.38233 * 119.99894 * 359.95792 * 28 27 26 30 30 H 1.09001 * 109.47095 * 270.02037 * 1 2 3 31 31 H 1.08999 * 109.47133 * 30.01957 * 1 2 3 32 32 H 1.08998 * 109.47197 * 150.01790 * 1 2 3 33 33 H 1.08000 * 119.61658 * 359.97438 * 3 2 1 34 34 H 1.07999 * 119.62100 * 179.97438 * 5 4 3 35 35 H 1.07997 * 120.42280 * 180.25853 * 6 5 4 36 36 H 1.08997 * 109.46947 * 324.99997 * 8 7 2 37 37 H 1.09000 * 109.46503 * 204.99693 * 8 7 2 38 38 H 0.96998 * 120.00503 * 359.97438 * 11 9 8 39 39 H 1.08997 * 109.47312 * 60.00223 * 12 11 9 40 40 H 1.08997 * 109.47437 * 299.99742 * 12 11 9 41 41 H 0.97000 * 119.99307 * 24.99880 * 15 13 12 42 42 H 0.97000 * 120.00043 * 180.02562 * 19 18 16 43 43 H 1.08000 * 120.00179 * 359.97438 * 25 24 13 44 44 H 1.08002 * 120.00077 * 180.22577 * 26 25 24 45 45 H 1.08003 * 119.99862 * 179.83315 * 27 26 25 46 46 H 1.07997 * 120.00377 * 179.97438 * 28 27 26 47 47 H 1.07995 * 120.00096 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5255 1.1999 0.0005 5 6 4.2257 0.0824 0.0015 6 6 3.5949 -1.1471 0.0074 7 6 2.2090 -1.1954 0.0005 8 6 1.4831 -2.5162 0.0005 9 6 1.1332 -2.8970 -1.4150 10 8 1.4431 -2.1681 -2.3333 11 7 0.4768 -4.0483 -1.6603 12 6 0.1371 -4.4188 -3.0363 13 6 -0.5988 -5.7602 -3.0364 14 1 0.0729 -6.5432 -2.6845 15 7 -1.7618 -5.6793 -2.1492 16 6 -2.2697 -6.8168 -1.5806 17 1 -1.8132 -7.7737 -1.7865 18 6 -3.3713 -6.7400 -0.7396 19 7 -3.8628 -7.8341 -0.1974 20 14 -4.1614 -5.0852 -0.3839 21 1 -5.2215 -4.8166 -1.3885 22 1 -4.7605 -5.1045 0.9748 23 1 -3.1304 -4.0188 -0.4552 24 6 -1.0561 -6.0822 -4.4358 25 6 -2.2032 -5.4983 -4.9397 26 6 -2.6204 -5.7906 -6.2248 27 6 -1.8951 -6.6734 -7.0029 28 6 -0.7509 -7.2615 -6.4971 29 6 -0.3315 -6.9661 -5.2135 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3633 -0.8901 -0.5135 33 1 1.6675 2.1276 -0.0004 34 1 5.3047 0.1286 0.0015 35 1 4.1738 -2.0588 0.0124 36 1 0.5702 -2.4290 0.5896 37 1 2.1243 -3.2830 0.4352 38 1 0.2299 -4.6318 -0.9259 39 1 1.0502 -4.5057 -3.6252 40 1 -0.5042 -3.6522 -3.4713 41 1 -2.1720 -4.8199 -1.9645 42 1 -4.6328 -7.7805 0.3900 43 1 -2.7720 -4.8115 -4.3304 44 1 -3.5147 -5.3315 -6.6198 45 1 -2.2225 -6.9039 -8.0060 46 1 -0.1845 -7.9515 -7.1049 47 1 0.5627 -7.4252 -4.8185 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714836401.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:10 Heat of formation + Delta-G solvation = 12.229968 kcal Electronic energy + Delta-G solvation = -28571.230102 eV Core-core repulsion = 24717.992662 eV Total energy + Delta-G solvation = -3853.237440 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.57929 -40.61539 -39.98558 -37.54829 -35.37675 -35.20691 -33.79073 -33.34036 -31.88713 -31.53903 -30.38441 -28.72410 -27.90581 -25.43164 -24.32223 -23.68301 -23.23211 -22.69522 -21.54320 -21.18215 -19.83991 -18.20351 -17.80415 -17.74590 -17.50671 -16.96368 -16.67074 -16.20330 -15.98506 -15.88805 -15.81896 -15.41646 -15.00176 -14.83119 -14.46561 -14.33876 -14.27450 -14.14906 -14.09869 -13.71945 -13.63868 -13.53704 -13.43834 -13.09830 -12.95410 -12.84156 -12.46040 -12.26965 -12.15837 -12.04510 -11.77184 -11.70552 -11.18019 -11.01625 -10.42883 -10.41021 -10.09596 -9.81113 -9.70054 -9.60271 -9.30692 -7.99070 -5.34434 0.20772 0.25111 0.56516 0.62433 1.37443 1.41781 1.48467 1.60999 2.22573 2.49250 2.87583 2.99266 3.33396 3.48797 3.49172 3.61772 3.79505 3.92222 3.98250 4.00938 4.06031 4.11037 4.18774 4.31969 4.32380 4.38148 4.41492 4.50097 4.54110 4.67750 4.72124 4.73798 4.76398 4.80711 4.89328 4.99388 5.04713 5.17204 5.19983 5.27555 5.39435 5.42621 5.67783 5.70406 5.78056 5.80535 5.87977 6.23490 6.24364 6.54960 7.03150 7.07708 7.21618 7.79599 7.99865 9.22080 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010178 B = 0.003252 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2750.459158 B = 8607.927355 C =10299.893390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.132 4.132 3 C 0.083 3.917 4 N -0.509 5.509 5 C 0.078 3.922 6 C -0.161 4.161 7 C -0.035 4.035 8 C -0.104 4.104 9 C 0.516 3.484 10 O -0.577 6.577 11 N -0.714 5.714 12 C 0.131 3.869 13 C 0.210 3.790 14 H 0.073 0.927 15 N -0.735 5.735 16 C -0.218 4.218 17 H 0.059 0.941 18 C -0.052 4.052 19 N -0.981 5.981 20 Si 0.942 3.058 21 H -0.291 1.291 22 H -0.299 1.299 23 H -0.244 1.244 24 C -0.102 4.102 25 C -0.113 4.113 26 C -0.136 4.136 27 C -0.132 4.132 28 C -0.127 4.127 29 C -0.127 4.127 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.170 0.830 34 H 0.178 0.822 35 H 0.155 0.845 36 H 0.123 0.877 37 H 0.135 0.865 38 H 0.414 0.586 39 H 0.079 0.921 40 H 0.055 0.945 41 H 0.366 0.634 42 H 0.256 0.744 43 H 0.104 0.896 44 H 0.131 0.869 45 H 0.143 0.857 46 H 0.144 0.856 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.072 11.260 -3.321 16.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.134 4.134 3 C -0.074 4.074 4 N -0.218 5.218 5 C -0.078 4.078 6 C -0.180 4.180 7 C -0.044 4.044 8 C -0.143 4.143 9 C 0.304 3.696 10 O -0.457 6.457 11 N -0.367 5.367 12 C 0.006 3.994 13 C 0.101 3.899 14 H 0.091 0.909 15 N -0.378 5.378 16 C -0.349 4.349 17 H 0.077 0.923 18 C -0.244 4.244 19 N -0.631 5.631 20 Si 0.770 3.230 21 H -0.218 1.218 22 H -0.226 1.226 23 H -0.168 1.168 24 C -0.105 4.105 25 C -0.132 4.132 26 C -0.154 4.154 27 C -0.150 4.150 28 C -0.145 4.145 29 C -0.146 4.146 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.187 0.813 34 H 0.195 0.805 35 H 0.173 0.827 36 H 0.141 0.859 37 H 0.153 0.847 38 H 0.251 0.749 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.199 0.801 42 H 0.065 0.935 43 H 0.122 0.878 44 H 0.149 0.851 45 H 0.161 0.839 46 H 0.162 0.838 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 12.721 12.353 -3.896 18.155 hybrid contribution -1.694 -0.557 0.643 1.895 sum 11.027 11.796 -3.253 16.472 Atomic orbital electron populations 1.20779 0.89484 1.03213 1.03412 1.20991 0.98314 0.93798 1.00251 1.22927 0.89951 0.98139 0.96350 1.67647 1.08918 1.32457 1.12795 1.23110 1.01439 0.87455 0.95786 1.22295 0.94308 1.00672 1.00773 1.19826 0.94154 0.94190 0.96218 1.20770 1.03840 0.95871 0.93832 1.20784 0.76940 0.80370 0.91544 1.90704 1.55145 1.52264 1.47618 1.45991 1.57878 1.22852 1.09933 1.21421 0.99196 0.95345 0.83404 1.19494 0.88236 0.95554 0.86626 0.90866 1.42679 1.34635 1.05493 1.54991 1.18877 1.08886 0.87418 1.19682 0.92255 1.25311 0.99190 0.99526 1.00353 1.69863 1.27153 1.28697 1.37411 0.85621 0.79183 0.81585 0.76609 1.21775 1.22623 1.16809 1.20794 0.95896 0.97211 0.96599 1.20983 0.96424 1.00224 0.95569 1.21373 1.00486 0.99280 0.94290 1.21404 0.95672 0.97196 1.00694 1.21415 0.97265 1.00177 0.95673 1.21281 1.00417 0.98007 0.94866 0.89015 0.90208 0.92734 0.81297 0.80533 0.82703 0.85931 0.84679 0.74859 0.90328 0.92626 0.80054 0.93507 0.87764 0.85111 0.83926 0.83789 0.84982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.13 9.30 71.24 0.66 -1.46 16 2 C -0.13 -2.94 5.90 -19.77 -0.12 -3.06 16 3 C 0.08 1.87 10.86 84.69 0.92 2.79 16 4 N -0.51 -12.47 10.36 -195.84 -2.03 -14.50 16 5 C 0.08 1.62 11.18 84.67 0.95 2.57 16 6 C -0.16 -3.21 9.80 22.36 0.22 -2.99 16 7 C -0.04 -0.78 4.41 -19.67 -0.09 -0.86 16 8 C -0.10 -2.00 5.19 29.10 0.15 -1.85 16 9 C 0.52 13.64 7.15 87.66 0.63 14.27 16 10 O -0.58 -19.64 16.03 -3.00 -0.05 -19.69 16 11 N -0.71 -18.86 5.39 -463.08 -2.49 -21.35 16 12 C 0.13 3.81 5.21 86.38 0.45 4.26 16 13 C 0.21 6.92 2.65 44.25 0.12 7.04 16 14 H 0.07 2.43 7.94 -2.39 -0.02 2.41 16 15 N -0.74 -29.44 3.59 -326.48 -1.17 -30.62 16 16 C -0.22 -11.07 10.40 84.04 0.87 -10.19 16 17 H 0.06 3.38 8.06 -2.91 -0.02 3.36 16 18 C -0.05 -2.82 5.50 84.86 0.47 -2.35 16 19 N -0.98 -59.40 13.97 21.65 0.30 -59.09 16 20 Si 0.94 42.00 27.74 68.60 1.90 43.91 16 21 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 22 H -0.30 -13.75 7.11 99.48 0.71 -13.05 16 23 H -0.24 -9.39 6.52 99.48 0.65 -8.75 16 24 C -0.10 -3.38 4.92 -19.86 -0.10 -3.47 16 25 C -0.11 -3.85 9.33 22.27 0.21 -3.64 16 26 C -0.14 -3.98 10.05 22.27 0.22 -3.76 16 27 C -0.13 -3.37 10.05 22.27 0.22 -3.15 16 28 C -0.13 -3.25 10.05 22.27 0.22 -3.03 16 29 C -0.13 -3.69 9.67 22.27 0.22 -3.47 16 30 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.08 1.35 8.09 -2.39 -0.02 1.33 16 32 H 0.05 1.20 6.35 -2.39 -0.02 1.18 16 33 H 0.17 2.95 8.06 -2.91 -0.02 2.93 16 34 H 0.18 2.56 8.06 -2.91 -0.02 2.54 16 35 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 36 H 0.12 2.05 7.10 -2.39 -0.02 2.03 16 37 H 0.14 1.84 8.07 -2.39 -0.02 1.82 16 38 H 0.41 10.53 8.14 -92.71 -0.75 9.78 16 39 H 0.08 2.18 8.14 -2.39 -0.02 2.17 16 40 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.37 14.40 5.66 -92.71 -0.52 13.87 16 42 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 43 H 0.10 3.69 7.71 -2.91 -0.02 3.67 16 44 H 0.13 3.25 8.06 -2.91 -0.02 3.22 16 45 H 0.14 2.75 8.06 -2.91 -0.02 2.72 16 46 H 0.14 2.77 8.06 -2.91 -0.02 2.74 16 47 H 0.13 3.30 8.04 -2.91 -0.02 3.27 16 Total: -1.00 -71.81 395.67 2.34 -69.47 By element: Atomic # 1 Polarization: 44.59 SS G_CDS: -0.35 Total: 44.24 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: 6.23 Total: -12.36 kcal Atomic # 7 Polarization: -120.17 SS G_CDS: -5.40 Total: -125.57 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.05 Total: -19.69 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 1.90 Total: 43.91 kcal Total: -71.81 2.34 -69.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714836401.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.695 kcal (2) G-P(sol) polarization free energy of solvation -71.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds