Wall clock time and date at job start Tue Mar 31 2020 22:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38597 * 120.32453 * 2 1 4 4 N 1.31494 * 120.89991 * 180.02562 * 3 2 1 5 5 C 1.32749 * 121.64280 * 359.97438 * 4 3 2 6 6 C 1.48170 * 119.71967 * 179.97438 * 5 4 3 7 7 O 1.21514 * 120.00060 * 174.49420 * 6 5 4 8 8 N 1.34781 * 120.00238 * 354.48329 * 6 5 4 9 9 C 1.46501 * 119.99819 * 180.02562 * 8 6 5 10 10 C 1.53007 * 109.46796 * 180.02562 * 9 8 6 11 11 H 1.08997 * 109.46952 * 65.00002 * 10 9 8 12 12 N 1.46496 * 109.46802 * 305.00110 * 10 9 8 13 13 C 1.36942 * 119.99897 * 155.00491 * 12 10 9 14 14 H 1.07999 * 119.99711 * 359.97438 * 13 12 10 15 15 C 1.38814 * 120.00184 * 179.97438 * 13 12 10 16 16 N 1.31620 * 119.99540 * 359.97438 * 15 13 12 17 17 Si 1.86790 * 120.00128 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47655 * 89.99795 * 17 15 13 19 19 H 1.48502 * 109.47126 * 209.99969 * 17 15 13 20 20 H 1.48505 * 109.47194 * 329.99812 * 17 15 13 21 21 C 1.50697 * 109.46970 * 184.99992 * 10 9 8 22 22 C 1.38232 * 119.99937 * 79.72337 * 21 10 9 23 23 C 1.38236 * 119.99542 * 179.78737 * 22 21 10 24 24 C 1.38232 * 120.00594 * 0.44117 * 23 22 21 25 25 C 1.38241 * 119.99470 * 359.81831 * 24 23 22 26 26 C 1.38230 * 120.00277 * 359.97071 * 25 24 23 27 27 C 1.39265 * 120.55858 * 0.25793 * 5 4 3 28 28 C 1.50698 * 120.47306 * 179.72157 * 27 5 4 29 29 C 1.38589 * 120.31994 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.47427 * 89.99644 * 1 2 3 31 31 H 1.09000 * 109.47553 * 209.99510 * 1 2 3 32 32 H 1.08999 * 109.47131 * 329.99886 * 1 2 3 33 33 H 1.08000 * 119.55158 * 0.02748 * 3 2 1 34 34 H 0.96999 * 119.99519 * 0.28082 * 8 6 5 35 35 H 1.09002 * 109.47209 * 299.99632 * 9 8 6 36 36 H 1.08996 * 109.47114 * 60.00568 * 9 8 6 37 37 H 0.97001 * 120.00286 * 334.99811 * 12 10 9 38 38 H 0.97004 * 119.99448 * 180.02562 * 16 15 13 39 39 H 1.07996 * 120.00292 * 0.02562 * 22 21 10 40 40 H 1.08010 * 119.99851 * 180.27755 * 23 22 21 41 41 H 1.07997 * 120.00681 * 179.83541 * 24 23 22 42 42 H 1.08002 * 119.99958 * 179.97438 * 25 24 23 43 43 H 1.07999 * 120.00069 * 180.02562 * 26 25 24 44 44 H 1.09004 * 109.46896 * 83.27614 * 28 27 5 45 45 H 1.08998 * 109.47146 * 203.28003 * 28 27 5 46 46 H 1.08999 * 109.46874 * 323.27688 * 28 27 5 47 47 H 1.07993 * 120.76129 * 359.97415 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1963 0.0000 4 7 3.5216 1.2095 -0.0005 5 6 4.2294 0.0865 -0.0005 6 6 5.7097 0.1510 -0.0017 7 8 6.3624 -0.8689 0.0993 8 7 6.3322 1.3411 -0.1149 9 6 7.7959 1.4048 -0.1166 10 6 8.2427 2.8615 -0.2555 11 1 7.9307 3.4228 0.6251 12 7 7.6310 3.4480 -1.4505 13 6 7.4433 4.8022 -1.5291 14 1 7.7458 5.4377 -0.7100 15 6 6.8642 5.3581 -2.6616 16 7 6.4960 4.5835 -3.6601 17 14 6.6074 7.2052 -2.7686 18 1 7.8065 7.8374 -3.3748 19 1 5.4179 7.4917 -3.6101 20 1 6.3937 7.7550 -1.4057 21 6 9.7435 2.9168 -0.3807 22 6 10.3462 2.6466 -1.5950 23 6 11.7226 2.7016 -1.7108 24 6 12.4968 3.0179 -0.6102 25 6 11.8943 3.2829 0.6054 26 6 10.5177 3.2321 0.7203 27 6 3.5923 -1.1519 -0.0054 28 6 4.3977 -2.4256 -0.0117 29 6 2.2066 -1.1963 -0.0005 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5137 32 1 -0.3633 0.8900 0.5138 33 1 1.6647 2.1305 0.0005 34 1 5.8112 2.1556 -0.1915 35 1 8.1785 0.9954 0.8184 36 1 8.1838 0.8240 -0.9534 37 1 7.3591 2.8772 -2.1861 38 1 6.0916 4.9720 -4.4516 39 1 9.7415 2.3963 -2.4541 40 1 12.1933 2.4949 -2.6607 41 1 13.5723 3.0583 -0.7001 42 1 12.4992 3.5296 1.4655 43 1 10.0471 3.4395 1.6699 44 1 4.6944 -2.6729 1.0076 45 1 3.7936 -3.2354 -0.4209 46 1 5.2875 -2.2898 -0.6264 47 1 1.6844 -2.1416 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714838586.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:49 Heat of formation + Delta-G solvation = 32.353341 kcal Electronic energy + Delta-G solvation = -28605.260921 eV Core-core repulsion = 24752.896096 eV Total energy + Delta-G solvation = -3852.364825 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.71350 -39.11788 -38.52824 -35.92934 -34.07814 -33.60029 -33.12647 -31.91494 -30.38968 -29.53168 -28.47143 -27.49690 -26.80308 -24.03391 -23.49503 -22.77269 -21.92699 -21.41373 -20.33226 -19.91523 -17.95666 -17.25122 -16.87982 -16.33238 -15.46822 -15.37751 -15.03426 -14.84060 -14.61609 -14.46915 -14.16303 -14.10397 -13.52103 -13.41974 -13.19847 -13.06477 -12.90393 -12.83940 -12.75915 -12.66502 -12.47082 -12.25457 -12.23932 -11.91484 -11.79175 -11.09357 -10.92259 -10.80096 -10.67937 -10.43689 -10.11055 -9.87239 -9.75428 -9.65110 -9.26876 -9.02897 -8.93857 -8.52476 -8.38286 -8.16484 -7.08287 -5.81567 -3.12611 0.68096 1.19457 1.88504 1.94966 2.92882 3.41232 3.46055 3.47906 3.48330 3.91903 4.26896 4.33901 4.54921 4.58839 4.66277 4.81023 4.93280 5.08491 5.27587 5.32030 5.33023 5.36852 5.44087 5.49834 5.55134 5.59396 5.63378 5.66351 5.74484 5.78788 5.81656 5.90612 6.04743 6.06508 6.08581 6.12117 6.27881 6.33287 6.44492 6.51439 6.63121 6.66132 6.86381 6.96090 7.04607 7.31346 7.55168 7.68205 7.71970 8.05397 8.34216 8.54386 9.47364 9.97253 10.33761 11.39943 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009208 B = 0.003556 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3039.991799 B = 7873.120338 C =10282.932151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.117 4.117 3 C 0.092 3.908 4 N -0.440 5.440 5 C 0.071 3.929 6 C 0.566 3.434 7 O -0.543 6.543 8 N -0.691 5.691 9 C 0.119 3.881 10 C 0.198 3.802 11 H 0.066 0.934 12 N -0.713 5.713 13 C -0.242 4.242 14 H 0.071 0.929 15 C -0.005 4.005 16 N -0.928 5.928 17 Si 0.905 3.095 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.281 1.281 21 C -0.080 4.080 22 C -0.083 4.083 23 C -0.128 4.128 24 C -0.135 4.135 25 C -0.130 4.130 26 C -0.120 4.120 27 C -0.072 4.072 28 C -0.115 4.115 29 C -0.093 4.093 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.161 0.839 34 H 0.421 0.579 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.387 0.613 38 H 0.255 0.745 39 H 0.123 0.877 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.115 0.885 44 H 0.076 0.924 45 H 0.056 0.944 46 H 0.101 0.899 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.257 -10.999 8.707 14.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.119 4.119 3 C -0.069 4.069 4 N -0.150 5.150 5 C -0.067 4.067 6 C 0.351 3.649 7 O -0.422 6.422 8 N -0.342 5.342 9 C -0.005 4.005 10 C 0.087 3.913 11 H 0.084 0.916 12 N -0.353 5.353 13 C -0.373 4.373 14 H 0.089 0.911 15 C -0.201 4.201 16 N -0.575 5.575 17 Si 0.736 3.264 18 H -0.218 1.218 19 H -0.218 1.218 20 H -0.207 1.207 21 C -0.084 4.084 22 C -0.102 4.102 23 C -0.146 4.146 24 C -0.153 4.153 25 C -0.148 4.148 26 C -0.139 4.139 27 C -0.075 4.075 28 C -0.172 4.172 29 C -0.119 4.119 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.178 0.822 34 H 0.260 0.740 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.222 0.778 38 H 0.065 0.935 39 H 0.141 0.859 40 H 0.131 0.869 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.133 0.867 44 H 0.095 0.905 45 H 0.075 0.925 46 H 0.119 0.881 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.339 -10.695 8.776 14.499 hybrid contribution -0.880 0.735 -0.569 1.280 sum -5.218 -9.959 8.207 13.920 Atomic orbital electron populations 1.20761 0.89995 1.03228 1.02869 1.21152 0.97709 0.94173 0.98848 1.22702 0.89381 0.97678 0.97116 1.67608 1.08653 1.30001 1.08742 1.21053 0.94456 0.89086 1.02079 1.17832 0.85743 0.83962 0.77341 1.90690 1.66145 1.33898 1.51486 1.45859 1.07809 1.09537 1.70950 1.21648 0.79374 0.97674 1.01832 1.19476 0.87738 0.91150 0.92974 0.91629 1.42436 1.71117 1.05455 1.16320 1.19174 1.33688 0.83235 1.01162 0.91111 1.24704 1.01288 0.97624 0.96533 1.69663 1.46961 1.33763 1.07134 0.86226 0.77244 0.85530 0.77376 1.21778 1.21827 1.20697 1.20985 0.97685 0.96621 0.93106 1.21007 0.93920 0.97574 0.97671 1.21103 0.94276 1.01047 0.98143 1.20976 0.99049 1.01813 0.93462 1.20980 0.94841 1.01677 0.97314 1.21013 0.93599 1.01025 0.98274 1.20919 0.94224 0.96351 0.95988 1.21038 1.00414 0.91865 1.03845 1.21380 0.92971 0.98362 0.99162 0.90541 0.91264 0.90878 0.82216 0.74006 0.91333 0.91380 0.77849 0.93472 0.85916 0.86879 0.87115 0.87017 0.86743 0.90548 0.92516 0.88103 0.84468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.03 36.00 0.36 -0.41 16 2 C -0.12 -1.24 5.91 -104.36 -0.62 -1.85 16 3 C 0.09 1.18 10.86 -17.56 -0.19 0.99 16 4 N -0.44 -7.09 9.56 -9.80 -0.09 -7.18 16 5 C 0.07 1.16 6.75 -83.01 -0.56 0.60 16 6 C 0.57 10.07 7.75 -12.18 -0.09 9.98 16 7 O -0.54 -10.13 13.31 5.35 0.07 -10.05 16 8 N -0.69 -12.42 5.37 -61.14 -0.33 -12.75 16 9 C 0.12 2.08 5.21 -4.04 -0.02 2.06 16 10 C 0.20 3.76 2.64 -69.08 -0.18 3.57 16 11 H 0.07 1.25 7.94 -51.93 -0.41 0.84 16 12 N -0.71 -16.53 3.81 -54.55 -0.21 -16.74 16 13 C -0.24 -6.35 9.92 -15.06 -0.15 -6.50 16 14 H 0.07 1.85 7.83 -52.49 -0.41 1.43 16 15 C 0.00 -0.14 5.50 -17.43 -0.10 -0.23 16 16 N -0.93 -26.97 13.06 55.49 0.72 -26.25 16 17 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 C -0.08 -1.47 4.92 -104.62 -0.51 -1.98 16 22 C -0.08 -1.55 9.32 -39.58 -0.37 -1.92 16 23 C -0.13 -2.09 10.05 -39.58 -0.40 -2.49 16 24 C -0.13 -2.01 10.05 -39.58 -0.40 -2.41 16 25 C -0.13 -1.94 10.05 -39.58 -0.40 -2.33 16 26 C -0.12 -1.96 9.67 -39.58 -0.38 -2.34 16 27 C -0.07 -0.98 5.93 -104.09 -0.62 -1.59 16 28 C -0.11 -1.41 8.74 36.00 0.31 -1.10 16 29 C -0.09 -1.02 9.51 -39.30 -0.37 -1.39 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 32 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 33 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 34 H 0.42 8.09 7.48 -40.82 -0.31 7.79 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.39 9.73 7.80 -40.82 -0.32 9.42 16 38 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 39 H 0.12 2.45 7.73 -52.49 -0.41 2.04 16 40 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 41 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 42 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 43 H 0.11 1.64 8.04 -52.49 -0.42 1.22 16 44 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.06 0.54 8.05 -51.93 -0.42 0.13 16 46 H 0.10 1.47 5.85 -51.93 -0.30 1.17 16 47 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 396.86 15.07 5.98 5.98 Total: -1.00 -30.79 396.86 -10.34 -41.13 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: -6.78 Total: 18.25 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -4.69 Total: -9.36 kcal Atomic # 7 Polarization: -63.02 SS G_CDS: 0.09 Total: -62.92 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.07 Total: -10.05 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.79 -10.34 -41.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714838586.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.483 kcal (2) G-P(sol) polarization free energy of solvation -30.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds