Wall clock time and date at job start Tue Mar 31 2020 22:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38597 * 120.32453 * 2 1 4 4 N 1.31494 * 120.89991 * 180.02562 * 3 2 1 5 5 C 1.32749 * 121.64280 * 359.97438 * 4 3 2 6 6 C 1.48170 * 119.71967 * 179.97438 * 5 4 3 7 7 O 1.21514 * 120.00060 * 174.49420 * 6 5 4 8 8 N 1.34781 * 120.00238 * 354.48329 * 6 5 4 9 9 C 1.46501 * 119.99819 * 180.02562 * 8 6 5 10 10 C 1.53007 * 109.46796 * 180.02562 * 9 8 6 11 11 H 1.08997 * 109.46952 * 65.00002 * 10 9 8 12 12 N 1.46496 * 109.46802 * 305.00110 * 10 9 8 13 13 C 1.36942 * 119.99897 * 155.00491 * 12 10 9 14 14 H 1.07999 * 119.99711 * 359.97438 * 13 12 10 15 15 C 1.38814 * 120.00184 * 179.97438 * 13 12 10 16 16 N 1.31620 * 119.99540 * 359.97438 * 15 13 12 17 17 Si 1.86790 * 120.00128 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47655 * 89.99795 * 17 15 13 19 19 H 1.48502 * 109.47126 * 209.99969 * 17 15 13 20 20 H 1.48505 * 109.47194 * 329.99812 * 17 15 13 21 21 C 1.50697 * 109.46970 * 184.99992 * 10 9 8 22 22 C 1.38232 * 119.99937 * 79.72337 * 21 10 9 23 23 C 1.38236 * 119.99542 * 179.78737 * 22 21 10 24 24 C 1.38232 * 120.00594 * 0.44117 * 23 22 21 25 25 C 1.38241 * 119.99470 * 359.81831 * 24 23 22 26 26 C 1.38230 * 120.00277 * 359.97071 * 25 24 23 27 27 C 1.39265 * 120.55858 * 0.25793 * 5 4 3 28 28 C 1.50698 * 120.47306 * 179.72157 * 27 5 4 29 29 C 1.38589 * 120.31994 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.47427 * 89.99644 * 1 2 3 31 31 H 1.09000 * 109.47553 * 209.99510 * 1 2 3 32 32 H 1.08999 * 109.47131 * 329.99886 * 1 2 3 33 33 H 1.08000 * 119.55158 * 0.02748 * 3 2 1 34 34 H 0.96999 * 119.99519 * 0.28082 * 8 6 5 35 35 H 1.09002 * 109.47209 * 299.99632 * 9 8 6 36 36 H 1.08996 * 109.47114 * 60.00568 * 9 8 6 37 37 H 0.97001 * 120.00286 * 334.99811 * 12 10 9 38 38 H 0.97004 * 119.99448 * 180.02562 * 16 15 13 39 39 H 1.07996 * 120.00292 * 0.02562 * 22 21 10 40 40 H 1.08010 * 119.99851 * 180.27755 * 23 22 21 41 41 H 1.07997 * 120.00681 * 179.83541 * 24 23 22 42 42 H 1.08002 * 119.99958 * 179.97438 * 25 24 23 43 43 H 1.07999 * 120.00069 * 180.02562 * 26 25 24 44 44 H 1.09004 * 109.46896 * 83.27614 * 28 27 5 45 45 H 1.08998 * 109.47146 * 203.28003 * 28 27 5 46 46 H 1.08999 * 109.46874 * 323.27688 * 28 27 5 47 47 H 1.07993 * 120.76129 * 359.97415 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1963 0.0000 4 7 3.5216 1.2095 -0.0005 5 6 4.2294 0.0865 -0.0005 6 6 5.7097 0.1510 -0.0017 7 8 6.3624 -0.8689 0.0993 8 7 6.3322 1.3411 -0.1149 9 6 7.7959 1.4048 -0.1166 10 6 8.2427 2.8615 -0.2555 11 1 7.9307 3.4228 0.6251 12 7 7.6310 3.4480 -1.4505 13 6 7.4433 4.8022 -1.5291 14 1 7.7458 5.4377 -0.7100 15 6 6.8642 5.3581 -2.6616 16 7 6.4960 4.5835 -3.6601 17 14 6.6074 7.2052 -2.7686 18 1 7.8065 7.8374 -3.3748 19 1 5.4179 7.4917 -3.6101 20 1 6.3937 7.7550 -1.4057 21 6 9.7435 2.9168 -0.3807 22 6 10.3462 2.6466 -1.5950 23 6 11.7226 2.7016 -1.7108 24 6 12.4968 3.0179 -0.6102 25 6 11.8943 3.2829 0.6054 26 6 10.5177 3.2321 0.7203 27 6 3.5923 -1.1519 -0.0054 28 6 4.3977 -2.4256 -0.0117 29 6 2.2066 -1.1963 -0.0005 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5137 32 1 -0.3633 0.8900 0.5138 33 1 1.6647 2.1305 0.0005 34 1 5.8112 2.1556 -0.1915 35 1 8.1785 0.9954 0.8184 36 1 8.1838 0.8240 -0.9534 37 1 7.3591 2.8772 -2.1861 38 1 6.0916 4.9720 -4.4516 39 1 9.7415 2.3963 -2.4541 40 1 12.1933 2.4949 -2.6607 41 1 13.5723 3.0583 -0.7001 42 1 12.4992 3.5296 1.4655 43 1 10.0471 3.4395 1.6699 44 1 4.6944 -2.6729 1.0076 45 1 3.7936 -3.2354 -0.4209 46 1 5.2875 -2.2898 -0.6264 47 1 1.6844 -2.1416 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714838586.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:48 Heat of formation + Delta-G solvation = 14.478321 kcal Electronic energy + Delta-G solvation = -28606.036040 eV Core-core repulsion = 24752.896096 eV Total energy + Delta-G solvation = -3853.139944 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.81904 -40.44873 -39.81645 -37.45558 -35.46947 -34.65627 -34.35166 -33.55167 -31.70484 -31.19210 -29.70047 -28.34894 -28.07145 -25.71010 -24.78695 -24.12224 -23.23279 -22.44394 -21.62645 -21.31059 -19.45574 -18.94078 -18.00490 -17.64622 -16.95072 -16.76239 -16.38062 -16.13248 -15.94202 -15.71894 -15.46924 -15.29155 -15.05763 -14.75637 -14.40894 -14.19032 -14.08739 -14.04089 -13.98462 -13.72102 -13.48597 -13.37922 -13.26903 -13.16303 -12.91947 -12.78441 -12.67373 -12.45547 -12.16431 -12.01366 -11.83855 -11.63716 -11.08246 -10.98433 -10.57853 -10.39462 -10.17022 -9.74591 -9.67579 -9.53028 -9.03844 -7.92144 -5.21797 -0.36162 0.23990 0.58393 0.64696 1.47357 1.48167 1.56081 1.69654 2.15220 2.56049 2.81624 3.01508 3.19253 3.42403 3.70609 3.76850 3.78087 3.92714 3.96554 4.02234 4.15878 4.20606 4.24558 4.33662 4.35443 4.41317 4.50985 4.62686 4.68056 4.78399 4.79158 4.81740 4.85958 4.88315 5.01337 5.09202 5.18570 5.21850 5.24691 5.30377 5.32206 5.49008 5.53885 5.69234 5.71290 5.73302 5.94163 6.25035 6.28238 6.44279 6.83411 7.15058 7.35061 8.02524 8.29280 9.30259 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009208 B = 0.003556 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3039.991799 B = 7873.120338 C =10282.932151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.100 4.100 3 C 0.074 3.926 4 N -0.475 5.475 5 C 0.033 3.967 6 C 0.561 3.439 7 O -0.560 6.560 8 N -0.696 5.696 9 C 0.131 3.869 10 C 0.204 3.796 11 H 0.067 0.933 12 N -0.718 5.718 13 C -0.231 4.231 14 H 0.073 0.927 15 C -0.064 4.064 16 N -0.964 5.964 17 Si 0.964 3.036 18 H -0.293 1.293 19 H -0.297 1.297 20 H -0.269 1.269 21 C -0.100 4.100 22 C -0.110 4.110 23 C -0.136 4.136 24 C -0.130 4.130 25 C -0.125 4.125 26 C -0.127 4.127 27 C -0.078 4.078 28 C -0.109 4.109 29 C -0.090 4.090 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.178 0.822 34 H 0.414 0.586 35 H 0.082 0.918 36 H 0.053 0.947 37 H 0.374 0.626 38 H 0.249 0.751 39 H 0.094 0.906 40 H 0.128 0.872 41 H 0.146 0.854 42 H 0.148 0.852 43 H 0.133 0.867 44 H 0.077 0.923 45 H 0.088 0.912 46 H 0.072 0.928 47 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.756 -11.327 10.490 16.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.102 4.102 3 C -0.087 4.087 4 N -0.185 5.185 5 C -0.103 4.103 6 C 0.347 3.653 7 O -0.440 6.440 8 N -0.346 5.346 9 C 0.006 3.994 10 C 0.094 3.906 11 H 0.085 0.915 12 N -0.357 5.357 13 C -0.362 4.362 14 H 0.091 0.909 15 C -0.257 4.257 16 N -0.615 5.615 17 Si 0.794 3.206 18 H -0.221 1.221 19 H -0.224 1.224 20 H -0.194 1.194 21 C -0.103 4.103 22 C -0.128 4.128 23 C -0.154 4.154 24 C -0.148 4.148 25 C -0.143 4.143 26 C -0.145 4.145 27 C -0.081 4.081 28 C -0.166 4.166 29 C -0.115 4.115 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.195 0.805 34 H 0.252 0.748 35 H 0.100 0.900 36 H 0.072 0.928 37 H 0.206 0.794 38 H 0.057 0.943 39 H 0.113 0.887 40 H 0.146 0.854 41 H 0.163 0.837 42 H 0.166 0.834 43 H 0.151 0.849 44 H 0.095 0.905 45 H 0.107 0.893 46 H 0.090 0.910 47 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -4.804 -11.036 10.612 16.047 hybrid contribution -0.726 0.765 -1.046 1.485 sum -5.530 -10.271 9.566 15.086 Atomic orbital electron populations 1.20876 0.86789 1.04932 1.03999 1.21581 0.99795 0.93075 0.95760 1.23183 0.88609 0.99682 0.97258 1.67491 1.10411 1.30593 1.09992 1.20895 0.93393 0.90478 1.05552 1.18256 0.86961 0.83438 0.76614 1.90666 1.66945 1.34106 1.52292 1.45885 1.07743 1.09519 1.71442 1.21514 0.79441 0.96607 1.01791 1.19527 0.88446 0.91517 0.91068 0.91540 1.42457 1.71677 1.04448 1.17149 1.19464 1.31608 0.84525 1.00641 0.90859 1.25385 1.02370 1.01259 0.96666 1.69819 1.48862 1.35136 1.07636 0.85276 0.76492 0.81247 0.77552 1.22097 1.22428 1.19395 1.20818 0.96861 0.98578 0.94058 1.20938 0.95107 0.99695 0.97107 1.21342 0.93374 1.00883 0.99770 1.21397 1.00723 0.99944 0.92704 1.21412 0.94401 0.99931 0.98525 1.21270 0.94534 1.00524 0.98204 1.21164 0.95733 0.95612 0.95565 1.20968 0.99734 0.92429 1.03480 1.21816 0.91755 1.00185 0.97735 0.89407 0.89122 0.89711 0.80520 0.74848 0.89960 0.92849 0.79403 0.94261 0.88747 0.85362 0.83668 0.83442 0.84920 0.90484 0.89321 0.90958 0.80627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.03 71.24 0.71 -0.39 16 2 C -0.10 -1.90 5.91 -19.70 -0.12 -2.01 16 3 C 0.07 1.86 10.86 84.83 0.92 2.78 16 4 N -0.47 -15.86 9.56 -184.91 -1.77 -17.63 16 5 C 0.03 1.13 6.75 41.89 0.28 1.41 16 6 C 0.56 21.24 7.75 86.88 0.67 21.92 16 7 O -0.56 -22.09 13.31 -3.76 -0.05 -22.14 16 8 N -0.70 -26.79 5.37 -465.64 -2.50 -29.29 16 9 C 0.13 4.85 5.21 86.38 0.45 5.30 16 10 C 0.20 8.06 2.64 44.25 0.12 8.18 16 11 H 0.07 2.60 7.94 -2.39 -0.02 2.58 16 12 N -0.72 -35.00 3.81 -326.50 -1.25 -36.25 16 13 C -0.23 -12.44 9.92 84.03 0.83 -11.61 16 14 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 15 C -0.06 -3.62 5.50 84.86 0.47 -3.16 16 16 N -0.96 -58.38 13.06 21.65 0.28 -58.10 16 17 Si 0.96 46.13 29.55 68.60 2.03 48.16 16 18 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 19 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 21 C -0.10 -3.72 4.92 -19.87 -0.10 -3.81 16 22 C -0.11 -4.25 9.32 22.27 0.21 -4.04 16 23 C -0.14 -4.37 10.05 22.27 0.22 -4.15 16 24 C -0.13 -3.52 10.05 22.27 0.22 -3.29 16 25 C -0.12 -3.33 10.05 22.27 0.22 -3.11 16 26 C -0.13 -3.94 9.67 22.27 0.22 -3.73 16 27 C -0.08 -2.09 5.93 -19.52 -0.12 -2.20 16 28 C -0.11 -2.65 8.74 71.24 0.62 -2.03 16 29 C -0.09 -1.75 9.51 22.45 0.21 -1.53 16 30 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.09 0.60 8.09 -2.39 -0.02 0.58 16 32 H 0.08 0.71 8.09 -2.39 -0.02 0.69 16 33 H 0.18 3.59 8.06 -2.91 -0.02 3.57 16 34 H 0.41 17.10 7.48 -92.71 -0.69 16.40 16 35 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 36 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.37 20.11 7.80 -92.71 -0.72 19.39 16 38 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 39 H 0.09 4.10 7.73 -2.91 -0.02 4.07 16 40 H 0.13 3.61 8.06 -2.91 -0.02 3.59 16 41 H 0.15 2.94 8.06 -2.91 -0.02 2.91 16 42 H 0.15 2.90 8.06 -2.91 -0.02 2.87 16 43 H 0.13 3.56 8.04 -2.91 -0.02 3.53 16 44 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.09 1.52 8.05 -2.39 -0.02 1.51 16 46 H 0.07 2.20 5.85 -2.39 -0.01 2.18 16 47 H 0.18 2.01 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -70.46 396.86 2.38 -68.07 By element: Atomic # 1 Polarization: 53.08 SS G_CDS: -0.42 Total: 52.66 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: 6.06 Total: -5.48 kcal Atomic # 7 Polarization: -136.04 SS G_CDS: -5.23 Total: -141.27 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.05 Total: -22.14 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -70.46 2.38 -68.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714838586.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.551 kcal (2) G-P(sol) polarization free energy of solvation -70.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds