Wall clock time and date at job start Tue Mar 31 2020 23:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.35837 * 126.45897 * 2 1 4 4 H 0.96994 * 124.92117 * 359.97438 * 3 2 1 5 5 N 1.28456 * 110.16421 * 180.02562 * 3 2 1 6 6 C 1.31932 * 110.21254 * 0.02562 * 5 3 2 7 7 C 1.47532 * 126.46071 * 179.97438 * 6 5 3 8 8 O 1.21585 * 119.99871 * 174.63234 * 7 6 5 9 9 N 1.34777 * 119.99953 * 354.36031 * 7 6 5 10 10 C 1.46501 * 119.99972 * 354.74051 * 9 7 6 11 11 C 1.46492 * 119.99958 * 174.74385 * 9 7 6 12 12 C 1.52998 * 109.47221 * 89.99900 * 11 9 7 13 13 N 1.46905 * 109.47066 * 179.97438 * 12 11 9 14 14 C 1.46903 * 110.99960 * 66.04583 * 13 12 11 15 15 C 1.46903 * 110.99971 * 189.99893 * 13 12 11 16 16 C 1.50698 * 109.46787 * 170.00192 * 15 13 12 17 17 O 1.21290 * 120.00120 * 359.97438 * 16 15 13 18 18 N 1.34780 * 119.99739 * 179.97438 * 16 15 13 19 19 C 1.37096 * 120.00096 * 179.97438 * 18 16 15 20 20 H 1.07998 * 120.00111 * 0.02562 * 19 18 16 21 21 C 1.38950 * 120.00255 * 179.97438 * 19 18 16 22 22 N 1.31418 * 119.99518 * 0.02562 * 21 19 18 23 23 Si 1.86791 * 120.00326 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47064 * 60.00041 * 23 21 19 25 25 H 1.48503 * 109.47416 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47321 * 300.00373 * 23 21 19 27 27 C 1.35784 * 126.45517 * 180.35098 * 2 1 3 28 28 O 1.36076 * 127.27422 * 359.97438 * 27 2 1 29 29 H 1.09003 * 109.47045 * 89.97170 * 1 2 3 30 30 H 1.08998 * 109.47349 * 209.97136 * 1 2 3 31 31 H 1.09003 * 109.47001 * 329.97758 * 1 2 3 32 32 H 1.09000 * 109.47297 * 85.24815 * 10 9 7 33 33 H 1.08991 * 109.47131 * 205.24769 * 10 9 7 34 34 H 1.08998 * 109.47280 * 325.25089 * 10 9 7 35 35 H 1.09003 * 109.47326 * 209.99957 * 11 9 7 36 36 H 1.09002 * 109.47042 * 329.99684 * 11 9 7 37 37 H 1.08996 * 109.47204 * 299.99943 * 12 11 9 38 38 H 1.09002 * 109.47289 * 59.99935 * 12 11 9 39 39 H 1.09006 * 109.46887 * 59.99858 * 14 13 12 40 40 H 1.08997 * 109.47054 * 179.97438 * 14 13 12 41 41 H 1.08996 * 109.47365 * 300.00116 * 14 13 12 42 42 H 1.08998 * 109.47149 * 290.00072 * 15 13 12 43 43 H 1.08999 * 109.46958 * 50.00311 * 15 13 12 44 44 H 0.97001 * 119.99546 * 0.02562 * 18 16 15 45 45 H 0.97001 * 119.99786 * 179.97438 * 22 21 19 46 46 H 0.96699 * 114.00677 * 270.14733 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3142 1.0925 0.0000 4 1 2.0045 2.0117 -0.0004 5 7 3.5471 0.7321 -0.0005 6 6 3.6373 -0.5841 -0.0015 7 6 4.8810 -1.3778 -0.0028 8 8 4.8295 -2.5886 0.0949 9 7 6.0738 -0.7610 -0.1180 10 6 6.1316 0.6832 -0.3572 11 6 7.3125 -1.5348 -0.0039 12 6 7.7279 -2.0392 -1.3873 13 7 8.9704 -2.8146 -1.2730 14 6 8.7532 -4.0464 -0.5025 15 6 9.5278 -3.1143 -2.5987 16 6 10.9122 -3.6888 -2.4433 17 8 11.3880 -3.8339 -1.3371 18 7 11.6218 -4.0414 -3.5336 19 6 12.8815 -4.5636 -3.3923 20 1 13.3052 -4.6928 -2.4074 21 6 13.6128 -4.9276 -4.5163 22 7 13.0971 -4.7709 -5.7149 23 14 15.3295 -5.6384 -4.3239 24 1 15.2616 -6.8856 -3.5206 25 1 15.8926 -5.9422 -5.6640 26 1 16.1992 -4.6521 -3.6339 27 6 2.3138 -1.0921 -0.0067 28 8 1.9325 -2.3984 -0.0142 29 1 -0.3633 0.0005 -1.0277 30 1 -0.3634 -0.8902 0.5134 31 1 -0.3633 0.8898 0.5142 32 1 6.0721 1.2118 0.5942 33 1 7.0698 0.9320 -0.8530 34 1 5.2959 0.9803 -0.9907 35 1 8.1004 -0.9013 0.4035 36 1 7.1503 -2.3846 0.6591 37 1 6.9400 -2.6727 -1.7947 38 1 7.8901 -1.1894 -2.0504 39 1 8.0031 -4.6597 -1.0018 40 1 9.6887 -4.6015 -0.4336 41 1 8.4065 -3.7921 0.4991 42 1 8.8893 -3.8372 -3.1064 43 1 9.5785 -2.1981 -3.1871 44 1 11.2414 -3.9250 -4.4183 45 1 13.6077 -5.0246 -6.4996 46 1 1.8205 -2.7806 0.8669 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715513791.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:12 Heat of formation + Delta-G solvation = -12.985341 kcal Electronic energy + Delta-G solvation = -28989.669871 eV Core-core repulsion = 24724.489750 eV Total energy + Delta-G solvation = -4265.180121 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.14050 -39.76745 -38.48651 -37.56849 -36.59665 -35.33685 -33.78760 -33.14617 -31.53042 -31.17914 -29.80862 -27.63286 -27.32383 -26.85430 -25.59628 -24.46552 -23.03823 -21.74205 -21.02082 -19.35378 -19.01615 -18.68078 -17.77097 -17.51695 -16.96203 -16.48354 -16.30047 -15.95413 -15.21881 -15.10845 -14.60697 -14.54095 -14.48873 -14.25714 -13.92043 -13.80691 -13.56102 -13.31320 -13.23358 -13.08517 -13.01302 -12.80364 -12.58406 -11.99889 -11.96595 -11.64196 -11.44717 -11.22179 -11.12569 -10.84200 -10.74248 -10.66806 -10.39419 -10.16399 -10.13959 -9.76306 -9.40547 -9.16401 -8.81967 -8.33144 -7.90935 -7.76201 -6.35588 -3.76186 1.13354 1.45900 2.24600 2.76903 3.12083 3.24569 3.29652 3.34343 3.75985 3.98273 4.11675 4.16440 4.24055 4.36900 4.46017 4.84562 4.92987 5.05989 5.10926 5.19380 5.21876 5.22607 5.29520 5.32148 5.45857 5.58594 5.61944 5.75541 5.78689 5.86497 5.92883 6.01389 6.07613 6.17028 6.34727 6.37798 6.48312 6.69258 7.17052 7.31195 7.36521 7.37495 7.48884 7.60901 8.02431 8.12824 8.68878 9.24388 9.61458 10.13803 10.82242 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030588 B = 0.001777 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.178232 B =15753.735256 C =15857.839925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.011 4.011 3 N -0.377 5.377 4 H 0.450 0.550 5 N -0.239 5.239 6 C -0.025 4.025 7 C 0.597 3.403 8 O -0.519 6.519 9 N -0.603 5.603 10 C 0.082 3.918 11 C 0.121 3.879 12 C 0.041 3.959 13 N -0.516 5.516 14 C 0.021 3.979 15 C 0.047 3.953 16 C 0.446 3.554 17 O -0.577 6.577 18 N -0.566 5.566 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.047 3.953 28 O -0.451 6.451 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.037 0.963 38 H 0.072 0.928 39 H 0.016 0.984 40 H 0.095 0.905 41 H 0.061 0.939 42 H 0.048 0.952 43 H 0.087 0.913 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.477 14.995 10.488 33.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.137 4.137 3 N -0.094 5.094 4 H 0.295 0.705 5 N -0.077 5.077 6 C -0.187 4.187 7 C 0.383 3.617 8 O -0.393 6.393 9 N -0.336 5.336 10 C -0.061 4.061 11 C -0.001 4.001 12 C -0.089 4.089 13 N -0.240 5.240 14 C -0.127 4.127 15 C -0.085 4.085 16 C 0.231 3.769 17 O -0.461 6.461 18 N -0.202 5.202 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.545 5.545 23 Si 0.758 3.242 24 H -0.200 1.200 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.008 4.008 28 O -0.257 6.257 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.055 0.945 38 H 0.090 0.910 39 H 0.035 0.965 40 H 0.114 0.886 41 H 0.080 0.920 42 H 0.066 0.934 43 H 0.105 0.895 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -26.054 15.406 10.740 32.117 hybrid contribution -0.625 -0.845 -0.640 1.230 sum -26.679 14.562 10.100 32.028 Atomic orbital electron populations 1.20300 0.85933 1.03896 1.03661 1.21588 0.95470 0.87413 1.09241 1.43183 1.03076 1.09285 1.53902 0.70507 1.73854 1.01131 1.14068 1.18625 1.22399 0.95401 0.89995 1.10867 1.16882 0.81465 0.86267 0.77128 1.90839 1.86130 1.12717 1.49593 1.47691 1.05545 1.09435 1.70964 1.21983 1.03174 0.79123 1.01814 1.21524 0.84234 0.96688 0.97687 1.22441 0.91199 0.98027 0.97211 1.61543 1.25304 1.21445 1.15755 1.22578 1.02308 0.90818 0.96997 1.21854 0.95680 1.00614 0.90318 1.19735 0.87168 0.84455 0.85507 1.90477 1.71482 1.58931 1.25194 1.41861 1.15376 1.55678 1.07323 1.19651 0.90892 1.37344 0.94865 0.87967 1.25255 1.00192 0.97934 0.94635 1.69613 1.38679 1.48447 0.97721 0.85917 0.81695 0.79449 0.77128 1.19951 1.21045 1.19934 1.17789 0.88985 0.85198 1.08873 1.84914 1.88691 1.19042 1.33041 0.90064 0.89476 0.90944 0.92310 0.90919 0.90019 0.89144 0.89530 0.94517 0.90975 0.96518 0.88645 0.92045 0.93446 0.89505 0.77505 0.91897 0.75734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.24 10.44 36.00 0.38 0.14 16 2 C -0.01 -0.07 7.27 -81.70 -0.59 -0.67 16 3 N -0.38 -2.13 6.87 33.71 0.23 -1.90 16 4 H 0.45 0.72 8.96 -190.45 -1.71 -0.99 16 5 N -0.24 -2.11 8.96 33.45 0.30 -1.81 16 6 C -0.03 -0.29 6.76 -82.69 -0.56 -0.85 16 7 C 0.60 8.32 7.66 -12.47 -0.10 8.22 16 8 O -0.52 -8.85 16.18 3.47 0.06 -8.80 16 9 N -0.60 -7.35 2.87 -182.82 -0.53 -7.87 16 10 C 0.08 0.75 9.33 59.85 0.56 1.30 16 11 C 0.12 1.61 5.27 -4.05 -0.02 1.59 16 12 C 0.04 0.61 5.28 -3.82 -0.02 0.59 16 13 N -0.52 -9.32 4.50 -244.37 -1.10 -10.42 16 14 C 0.02 0.38 8.96 60.07 0.54 0.92 16 15 C 0.05 0.90 5.45 -4.98 -0.03 0.87 16 16 C 0.45 10.91 7.47 -10.98 -0.08 10.82 16 17 O -0.58 -15.89 13.91 5.55 0.08 -15.81 16 18 N -0.57 -14.76 5.29 -10.96 -0.06 -14.82 16 19 C -0.30 -8.48 9.68 -14.93 -0.14 -8.62 16 20 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 21 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 22 N -0.90 -25.07 13.05 55.50 0.72 -24.34 16 23 Si 0.93 21.46 29.55 -169.99 -5.02 16.44 16 24 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 27 C 0.05 0.48 7.28 -39.11 -0.28 0.20 16 28 O -0.45 -4.66 13.21 -21.80 -0.29 -4.95 16 29 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.06 8.14 -51.93 -0.42 -0.36 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.59 8.04 -51.93 -0.42 0.17 16 34 H 0.08 0.73 5.88 -51.93 -0.31 0.43 16 35 H 0.09 1.11 8.07 -51.93 -0.42 0.69 16 36 H 0.09 1.26 5.92 -51.93 -0.31 0.95 16 37 H 0.04 0.60 8.12 -51.93 -0.42 0.18 16 38 H 0.07 0.99 7.93 -51.93 -0.41 0.57 16 39 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.10 2.02 5.82 -51.93 -0.30 1.72 16 41 H 0.06 1.00 6.47 -51.93 -0.34 0.66 16 42 H 0.05 0.86 8.12 -51.93 -0.42 0.44 16 43 H 0.09 1.50 7.93 -51.93 -0.41 1.09 16 44 H 0.39 9.81 7.90 -40.82 -0.32 9.49 16 45 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 46 H 0.39 2.38 9.07 45.56 0.41 2.80 16 LS Contribution 386.47 15.07 5.82 5.82 Total: -1.00 -37.17 386.47 -7.23 -44.40 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -6.99 Total: 9.07 kcal Atomic # 6 Polarization: 15.44 SS G_CDS: -0.45 Total: 14.99 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: -0.43 Total: -61.16 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -0.15 Total: -29.56 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.17 -7.23 -44.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715513791.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.416 kcal (2) G-P(sol) polarization free energy of solvation -37.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds