Wall clock time and date at job start Tue Mar 31 2020 23:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.35837 * 126.45897 * 2 1 4 4 H 0.96994 * 124.92117 * 359.97438 * 3 2 1 5 5 N 1.28456 * 110.16421 * 180.02562 * 3 2 1 6 6 C 1.31932 * 110.21254 * 0.02562 * 5 3 2 7 7 C 1.47532 * 126.46071 * 179.97438 * 6 5 3 8 8 O 1.21585 * 119.99871 * 174.63234 * 7 6 5 9 9 N 1.34777 * 119.99953 * 354.36031 * 7 6 5 10 10 C 1.46501 * 119.99972 * 354.74051 * 9 7 6 11 11 C 1.46492 * 119.99958 * 174.74385 * 9 7 6 12 12 C 1.52998 * 109.47221 * 89.99900 * 11 9 7 13 13 N 1.46905 * 109.47066 * 179.97438 * 12 11 9 14 14 C 1.46903 * 110.99960 * 66.04583 * 13 12 11 15 15 C 1.46903 * 110.99971 * 189.99893 * 13 12 11 16 16 C 1.50698 * 109.46787 * 170.00192 * 15 13 12 17 17 O 1.21290 * 120.00120 * 359.97438 * 16 15 13 18 18 N 1.34780 * 119.99739 * 179.97438 * 16 15 13 19 19 C 1.37096 * 120.00096 * 179.97438 * 18 16 15 20 20 H 1.07998 * 120.00111 * 0.02562 * 19 18 16 21 21 C 1.38950 * 120.00255 * 179.97438 * 19 18 16 22 22 N 1.31418 * 119.99518 * 0.02562 * 21 19 18 23 23 Si 1.86791 * 120.00326 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47064 * 60.00041 * 23 21 19 25 25 H 1.48503 * 109.47416 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47321 * 300.00373 * 23 21 19 27 27 C 1.35784 * 126.45517 * 180.35098 * 2 1 3 28 28 O 1.36076 * 127.27422 * 359.97438 * 27 2 1 29 29 H 1.09003 * 109.47045 * 89.97170 * 1 2 3 30 30 H 1.08998 * 109.47349 * 209.97136 * 1 2 3 31 31 H 1.09003 * 109.47001 * 329.97758 * 1 2 3 32 32 H 1.09000 * 109.47297 * 85.24815 * 10 9 7 33 33 H 1.08991 * 109.47131 * 205.24769 * 10 9 7 34 34 H 1.08998 * 109.47280 * 325.25089 * 10 9 7 35 35 H 1.09003 * 109.47326 * 209.99957 * 11 9 7 36 36 H 1.09002 * 109.47042 * 329.99684 * 11 9 7 37 37 H 1.08996 * 109.47204 * 299.99943 * 12 11 9 38 38 H 1.09002 * 109.47289 * 59.99935 * 12 11 9 39 39 H 1.09006 * 109.46887 * 59.99858 * 14 13 12 40 40 H 1.08997 * 109.47054 * 179.97438 * 14 13 12 41 41 H 1.08996 * 109.47365 * 300.00116 * 14 13 12 42 42 H 1.08998 * 109.47149 * 290.00072 * 15 13 12 43 43 H 1.08999 * 109.46958 * 50.00311 * 15 13 12 44 44 H 0.97001 * 119.99546 * 0.02562 * 18 16 15 45 45 H 0.97001 * 119.99786 * 179.97438 * 22 21 19 46 46 H 0.96699 * 114.00677 * 270.14733 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3142 1.0925 0.0000 4 1 2.0045 2.0117 -0.0004 5 7 3.5471 0.7321 -0.0005 6 6 3.6373 -0.5841 -0.0015 7 6 4.8810 -1.3778 -0.0028 8 8 4.8295 -2.5886 0.0949 9 7 6.0738 -0.7610 -0.1180 10 6 6.1316 0.6832 -0.3572 11 6 7.3125 -1.5348 -0.0039 12 6 7.7279 -2.0392 -1.3873 13 7 8.9704 -2.8146 -1.2730 14 6 8.7532 -4.0464 -0.5025 15 6 9.5278 -3.1143 -2.5987 16 6 10.9122 -3.6888 -2.4433 17 8 11.3880 -3.8339 -1.3371 18 7 11.6218 -4.0414 -3.5336 19 6 12.8815 -4.5636 -3.3923 20 1 13.3052 -4.6928 -2.4074 21 6 13.6128 -4.9276 -4.5163 22 7 13.0971 -4.7709 -5.7149 23 14 15.3295 -5.6384 -4.3239 24 1 15.2616 -6.8856 -3.5206 25 1 15.8926 -5.9422 -5.6640 26 1 16.1992 -4.6521 -3.6339 27 6 2.3138 -1.0921 -0.0067 28 8 1.9325 -2.3984 -0.0142 29 1 -0.3633 0.0005 -1.0277 30 1 -0.3634 -0.8902 0.5134 31 1 -0.3633 0.8898 0.5142 32 1 6.0721 1.2118 0.5942 33 1 7.0698 0.9320 -0.8530 34 1 5.2959 0.9803 -0.9907 35 1 8.1004 -0.9013 0.4035 36 1 7.1503 -2.3846 0.6591 37 1 6.9400 -2.6727 -1.7947 38 1 7.8901 -1.1894 -2.0504 39 1 8.0031 -4.6597 -1.0018 40 1 9.6887 -4.6015 -0.4336 41 1 8.4065 -3.7921 0.4991 42 1 8.8893 -3.8372 -3.1064 43 1 9.5785 -2.1981 -3.1871 44 1 11.2414 -3.9250 -4.4183 45 1 13.6077 -5.0246 -6.4996 46 1 1.8205 -2.7806 0.8669 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715513791.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:11 Heat of formation + Delta-G solvation = -44.852135 kcal Electronic energy + Delta-G solvation = -28991.051719 eV Core-core repulsion = 24724.489750 eV Total energy + Delta-G solvation = -4266.561969 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.76765 -40.83181 -40.27778 -38.32557 -38.01555 -36.49361 -35.81623 -33.72685 -33.27167 -32.19073 -30.96674 -29.18199 -27.91109 -27.65005 -27.09037 -26.03934 -24.15597 -22.37955 -22.27738 -21.00344 -20.18036 -19.83102 -19.34857 -18.14198 -17.91523 -17.78912 -17.35364 -17.07886 -16.62279 -16.56523 -16.08418 -16.01117 -15.60803 -15.34214 -15.22846 -14.97946 -14.78002 -14.39036 -14.13100 -13.96718 -13.77490 -13.75585 -13.52186 -13.42923 -13.26456 -13.09686 -12.99296 -12.61188 -12.54196 -12.40933 -12.32022 -12.11351 -11.86439 -11.55459 -11.44388 -11.07149 -10.43059 -10.33125 -9.99371 -9.82497 -9.66470 -9.29731 -8.44938 -5.93739 0.37107 0.84309 1.40892 1.42241 1.53478 1.66286 1.95611 2.05872 2.18900 2.30387 2.80923 3.07187 3.21394 3.41594 3.61556 3.69323 3.84139 3.95655 4.08219 4.21796 4.33562 4.38156 4.38533 4.46439 4.50669 4.59189 4.61457 4.72544 4.74670 4.78231 4.83357 4.90593 4.94865 5.04577 5.16704 5.20581 5.41988 5.44499 5.83349 5.99244 6.02727 6.12318 6.27926 6.61846 6.68890 6.78532 7.04851 7.13976 7.57160 8.12978 8.72371 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030588 B = 0.001777 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.178232 B =15753.735256 C =15857.839925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.011 3.989 3 N -0.354 5.354 4 H 0.469 0.531 5 N -0.235 5.235 6 C -0.059 4.059 7 C 0.590 3.410 8 O -0.564 6.564 9 N -0.600 5.600 10 C 0.082 3.918 11 C 0.127 3.873 12 C 0.050 3.950 13 N -0.526 5.526 14 C 0.029 3.971 15 C 0.057 3.943 16 C 0.443 3.557 17 O -0.611 6.611 18 N -0.574 5.574 19 C -0.333 4.333 20 H 0.080 0.920 21 C -0.014 4.014 22 N -0.922 5.922 23 Si 0.995 3.005 24 H -0.273 1.273 25 H -0.271 1.271 26 H -0.271 1.271 27 C 0.013 3.987 28 O -0.470 6.470 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.069 0.931 37 H 0.022 0.978 38 H 0.091 0.909 39 H 0.018 0.982 40 H 0.062 0.938 41 H 0.077 0.923 42 H 0.060 0.940 43 H 0.113 0.887 44 H 0.395 0.605 45 H 0.277 0.723 46 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.922 17.201 10.231 35.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.116 4.116 3 N -0.075 5.075 4 H 0.319 0.681 5 N -0.074 5.074 6 C -0.218 4.218 7 C 0.377 3.623 8 O -0.441 6.441 9 N -0.333 5.333 10 C -0.060 4.060 11 C 0.004 3.996 12 C -0.079 4.079 13 N -0.250 5.250 14 C -0.120 4.120 15 C -0.074 4.074 16 C 0.231 3.769 17 O -0.497 6.497 18 N -0.212 5.212 19 C -0.462 4.462 20 H 0.098 0.902 21 C -0.214 4.214 22 N -0.563 5.563 23 Si 0.818 3.182 24 H -0.198 1.198 25 H -0.195 1.195 26 H -0.196 1.196 27 C -0.042 4.042 28 O -0.278 6.278 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.121 0.879 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.123 0.877 36 H 0.088 0.912 37 H 0.041 0.959 38 H 0.109 0.891 39 H 0.037 0.963 40 H 0.081 0.919 41 H 0.096 0.904 42 H 0.078 0.922 43 H 0.131 0.869 44 H 0.229 0.771 45 H 0.087 0.913 46 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -27.523 17.675 10.475 34.346 hybrid contribution -0.293 -1.438 -0.523 1.558 sum -27.816 16.237 9.952 33.711 Atomic orbital electron populations 1.20479 0.83051 1.05579 1.04609 1.21982 0.96855 0.86238 1.06480 1.43333 1.02155 1.10311 1.51677 0.68081 1.73765 1.02528 1.12712 1.18421 1.22180 0.94958 0.90988 1.13719 1.17303 0.82563 0.86074 0.76350 1.90796 1.86908 1.14629 1.51808 1.47765 1.04681 1.10543 1.70261 1.22146 1.04020 0.77142 1.02699 1.21381 0.85166 0.96691 0.96367 1.22432 0.89146 0.97745 0.98571 1.61523 1.27070 1.21395 1.15056 1.22429 1.00480 0.90875 0.98169 1.21754 0.92411 1.01742 0.91510 1.20640 0.88688 0.83103 0.84498 1.90456 1.72823 1.59990 1.26462 1.41923 1.15126 1.56183 1.07934 1.19646 0.92485 1.39623 0.94481 0.90168 1.26061 1.03699 0.97574 0.94053 1.69679 1.40005 1.48362 0.98213 0.84967 0.76999 0.78570 0.77650 1.19781 1.19513 1.19603 1.18142 0.89290 0.85876 1.10913 1.84856 1.88684 1.19778 1.34461 0.89303 0.89169 0.87929 0.91123 0.89575 0.89715 0.87724 0.91243 0.95923 0.89094 0.96329 0.91916 0.90446 0.92184 0.86865 0.77087 0.91335 0.74379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.23 10.44 71.24 0.74 0.52 16 2 C 0.01 0.12 7.27 41.37 0.30 0.43 16 3 N -0.35 -3.05 6.87 -47.27 -0.32 -3.38 16 4 H 0.47 -0.16 8.96 -220.01 -1.97 -2.14 16 5 N -0.24 -3.74 8.96 -48.08 -0.43 -4.17 16 6 C -0.06 -1.34 6.76 42.45 0.29 -1.05 16 7 C 0.59 16.70 7.66 86.69 0.66 17.36 16 8 O -0.56 -20.11 16.18 -2.24 -0.04 -20.15 16 9 N -0.60 -14.26 2.87 -850.58 -2.44 -16.71 16 10 C 0.08 1.33 9.33 127.77 1.19 2.53 16 11 C 0.13 3.30 5.27 86.38 0.45 3.76 16 12 C 0.05 1.44 5.28 86.30 0.46 1.90 16 13 N -0.53 -18.78 4.50 -927.04 -4.17 -22.95 16 14 C 0.03 1.06 8.96 127.69 1.14 2.20 16 15 C 0.06 2.16 5.45 85.56 0.47 2.62 16 16 C 0.44 22.03 7.47 87.66 0.66 22.69 16 17 O -0.61 -34.65 13.91 -3.06 -0.04 -34.70 16 18 N -0.57 -30.50 5.29 -306.99 -1.62 -32.12 16 19 C -0.33 -19.34 9.68 84.04 0.81 -18.53 16 20 H 0.08 4.93 7.16 -2.91 -0.02 4.91 16 21 C -0.01 -0.78 5.50 84.93 0.47 -0.32 16 22 N -0.92 -50.85 13.05 21.66 0.28 -50.56 16 23 Si 0.99 43.82 29.55 68.60 2.03 45.85 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 25 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 26 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 27 C 0.01 0.27 7.28 22.57 0.16 0.43 16 28 O -0.47 -9.95 13.21 -92.68 -1.22 -11.18 16 29 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.10 -0.28 8.14 -2.39 -0.02 -0.30 16 32 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.09 1.18 8.04 -2.39 -0.02 1.16 16 34 H 0.08 1.36 5.88 -2.39 -0.01 1.34 16 35 H 0.10 2.42 8.07 -2.39 -0.02 2.40 16 36 H 0.07 2.06 5.92 -2.39 -0.01 2.04 16 37 H 0.02 0.73 8.12 -2.39 -0.02 0.71 16 38 H 0.09 2.29 7.93 -2.39 -0.02 2.27 16 39 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 40 H 0.06 2.75 5.82 -2.39 -0.01 2.74 16 41 H 0.08 2.57 6.47 -2.39 -0.02 2.55 16 42 H 0.06 2.15 8.12 -2.39 -0.02 2.13 16 43 H 0.11 3.70 7.93 -2.39 -0.02 3.68 16 44 H 0.40 20.02 7.90 -92.71 -0.73 19.29 16 45 H 0.28 14.34 8.31 -92.71 -0.77 13.57 16 46 H 0.40 5.28 9.07 -74.06 -0.67 4.60 16 Total: -1.00 -82.76 386.47 -2.49 -85.25 By element: Atomic # 1 Polarization: 32.60 SS G_CDS: -2.32 Total: 30.29 kcal Atomic # 6 Polarization: 26.73 SS G_CDS: 7.81 Total: 34.54 kcal Atomic # 7 Polarization: -121.19 SS G_CDS: -8.71 Total: -129.90 kcal Atomic # 8 Polarization: -64.72 SS G_CDS: -1.30 Total: -66.03 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -82.76 -2.49 -85.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715513791.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.397 kcal (2) G-P(sol) polarization free energy of solvation -82.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds