Wall clock time and date at job start Tue Mar 31 2020 23:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35316 * 126.13099 * 2 1 4 4 C 1.39868 * 107.92272 * 179.97438 * 3 2 1 5 5 N 1.30837 * 108.20148 * 359.97438 * 4 3 2 6 6 N 1.34954 * 126.12532 * 179.97438 * 2 1 3 7 7 C 1.46494 * 126.03475 * 359.75813 * 6 2 1 8 8 C 1.50704 * 109.47311 * 90.00006 * 7 6 2 9 9 O 1.21287 * 119.99779 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00342 * 179.97438 * 8 7 6 11 11 C 1.46502 * 120.00086 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47180 * 180.02562 * 11 10 8 13 13 H 1.09006 * 109.47003 * 59.99579 * 12 11 10 14 14 O 1.42896 * 109.47278 * 300.00306 * 12 11 10 15 15 C 1.52997 * 109.47108 * 179.97438 * 12 11 10 16 16 N 1.46903 * 109.47162 * 184.99785 * 15 12 11 17 17 C 1.46899 * 111.00229 * 179.97438 * 16 15 12 18 18 C 1.50704 * 109.47283 * 179.97438 * 17 16 15 19 19 O 1.21293 * 119.99549 * 0.02562 * 18 17 16 20 20 N 1.34769 * 119.99898 * 180.02562 * 18 17 16 21 21 C 1.37096 * 119.99851 * 180.02562 * 20 18 17 22 22 H 1.08005 * 120.00178 * 0.02562 * 21 20 18 23 23 C 1.38954 * 120.00090 * 180.02562 * 21 20 18 24 24 N 1.31415 * 119.99870 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 120.00015 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.47174 * 90.00099 * 25 23 21 27 27 H 1.48495 * 109.47555 * 210.00327 * 25 23 21 28 28 H 1.48506 * 109.47142 * 330.00358 * 25 23 21 29 29 H 1.09001 * 109.47414 * 270.02695 * 1 2 3 30 30 H 1.09002 * 109.47392 * 30.02818 * 1 2 3 31 31 H 1.09000 * 109.47238 * 150.02741 * 1 2 3 32 32 H 1.07999 * 126.03437 * 359.97433 * 3 2 1 33 33 H 1.08001 * 125.89990 * 179.97438 * 4 3 2 34 34 H 1.09004 * 109.47324 * 209.99797 * 7 6 2 35 35 H 1.08997 * 109.47734 * 329.99813 * 7 6 2 36 36 H 0.96998 * 120.00079 * 0.02562 * 10 8 7 37 37 H 1.09006 * 109.46964 * 299.99978 * 11 10 8 38 38 H 1.08989 * 109.47328 * 60.00024 * 11 10 8 39 39 H 0.96702 * 113.99579 * 299.99714 * 14 12 11 40 40 H 1.09002 * 109.47435 * 305.00174 * 15 12 11 41 41 H 1.08997 * 109.47002 * 65.00176 * 15 12 11 42 42 H 1.00898 * 110.99931 * 303.96144 * 16 15 12 43 43 H 1.08993 * 109.47600 * 300.00636 * 17 16 15 44 44 H 1.09002 * 109.46631 * 60.00826 * 17 16 15 45 45 H 0.96995 * 120.00124 * 0.02562 * 20 18 17 46 46 H 0.97001 * 119.99308 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 0.0006 5 7 3.6333 -0.6525 0.0015 6 7 2.3026 -1.0901 0.0005 7 6 1.8538 -2.4846 0.0061 8 6 1.6950 -2.9670 -1.4128 9 8 1.9329 -2.2193 -2.3377 10 7 1.2888 -4.2292 -1.6540 11 6 1.1350 -4.6982 -3.0334 12 6 0.6662 -6.1546 -3.0275 13 1 -0.2908 -6.2262 -2.5105 14 8 1.6328 -6.9635 -2.3542 15 6 0.5050 -6.6443 -4.4680 16 7 -0.0585 -8.0009 -4.4639 17 6 -0.2283 -8.5047 -5.8334 18 6 -0.8065 -9.8956 -5.7889 19 8 -1.0534 -10.4159 -4.7214 20 7 -1.0493 -10.5614 -6.9353 21 6 -1.5758 -11.8266 -6.8949 22 1 -1.7964 -12.2896 -5.9444 23 6 -1.8257 -12.5132 -8.0768 24 7 -2.3309 -13.7258 -8.0380 25 14 -1.4449 -11.7122 -9.7207 26 1 -0.0512 -12.0361 -10.1182 27 1 -2.3848 -12.2238 -10.7503 28 1 -1.5958 -10.2397 -9.6007 29 1 -0.3634 0.0005 1.0277 30 1 -0.3634 0.8897 -0.5143 31 1 -0.3634 -0.8902 -0.5134 32 1 1.9741 2.1210 -0.0004 33 1 4.5084 1.2890 0.0004 34 1 2.5914 -3.1016 0.5192 35 1 0.8971 -2.5564 0.5234 36 1 1.0982 -4.8271 -0.9144 37 1 0.3973 -4.0815 -3.5467 38 1 2.0917 -4.6263 -3.5504 39 1 2.5102 -6.9479 -2.7605 40 1 -0.1650 -5.9742 -5.0068 41 1 1.4782 -6.6567 -4.9586 42 1 0.5115 -8.6276 -3.9158 43 1 -0.9035 -7.8474 -6.3812 44 1 0.7397 -8.5299 -6.3338 45 1 -0.8516 -10.1454 -7.7889 46 1 -2.5049 -14.2052 -8.8631 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715602397.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:56 Heat of formation + Delta-G solvation = -34.460475 kcal Electronic energy + Delta-G solvation = -27851.935090 eV Core-core repulsion = 23585.823737 eV Total energy + Delta-G solvation = -4266.111353 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.67862 -40.08460 -38.73344 -38.07304 -35.14707 -34.67236 -33.91653 -33.88045 -32.47170 -31.69966 -30.69048 -28.39588 -27.34631 -26.93498 -24.85155 -23.21603 -22.08803 -21.70961 -21.19059 -20.05973 -19.42772 -18.42590 -18.06997 -17.45148 -16.94053 -16.75956 -16.01137 -15.78018 -15.71425 -15.42031 -15.08857 -14.86357 -14.53672 -14.45748 -14.21683 -13.94186 -13.65659 -13.47683 -13.34202 -13.24519 -13.13703 -13.06043 -12.75234 -12.50064 -12.43258 -12.15482 -11.96458 -11.76433 -11.30605 -11.18088 -10.95340 -10.73418 -10.62366 -10.43794 -9.99977 -9.61899 -9.60195 -9.57597 -8.84784 -8.64451 -8.26529 -8.19771 -6.33667 -3.85282 1.41595 1.93850 2.03861 2.54109 2.69900 3.00243 3.04260 3.12963 3.70088 3.81663 4.01703 4.03157 4.07747 4.16422 4.23099 4.46455 4.52873 4.61028 4.63842 4.75976 4.76639 4.88739 4.99588 5.09853 5.18970 5.25104 5.30561 5.33574 5.39777 5.42166 5.53431 5.73132 5.74868 5.79023 5.84505 5.88270 6.30546 6.56149 6.93597 6.95087 7.25089 7.36748 7.50744 7.55360 7.65159 8.11579 8.56806 8.92176 9.39461 9.79338 10.79397 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.034651 B = 0.001445 C = 0.001431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.863560 B =19369.616034 C =19559.550110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.093 3.907 3 C -0.274 4.274 4 C 0.051 3.949 5 N -0.290 5.290 6 N -0.358 5.358 7 C 0.114 3.886 8 C 0.494 3.506 9 O -0.521 6.521 10 N -0.719 5.719 11 C 0.090 3.910 12 C 0.098 3.902 13 H 0.119 0.881 14 O -0.554 6.554 15 C 0.031 3.969 16 N -0.664 5.664 17 C 0.048 3.952 18 C 0.449 3.551 19 O -0.563 6.563 20 N -0.590 5.590 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.880 5.880 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.147 0.853 33 H 0.184 0.816 34 H 0.127 0.873 35 H 0.123 0.877 36 H 0.408 0.592 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.374 0.626 40 H 0.083 0.917 41 H 0.033 0.967 42 H 0.358 0.642 43 H 0.087 0.913 44 H 0.044 0.956 45 H 0.370 0.630 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.796 28.718 14.565 33.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.033 4.033 3 C -0.303 4.303 4 C -0.136 4.136 5 N -0.110 5.110 6 N -0.141 5.141 7 C -0.012 4.012 8 C 0.278 3.722 9 O -0.396 6.396 10 N -0.372 5.372 11 C -0.035 4.035 12 C 0.038 3.962 13 H 0.136 0.864 14 O -0.359 6.359 15 C -0.100 4.100 16 N -0.297 5.297 17 C -0.085 4.085 18 C 0.235 3.765 19 O -0.445 6.445 20 N -0.229 5.229 21 C -0.435 4.435 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.520 5.520 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.201 1.201 28 H -0.195 1.195 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.165 0.835 33 H 0.201 0.799 34 H 0.145 0.855 35 H 0.141 0.859 36 H 0.244 0.756 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.222 0.778 40 H 0.101 0.899 41 H 0.051 0.949 42 H 0.179 0.821 43 H 0.105 0.895 44 H 0.062 0.938 45 H 0.203 0.797 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.242 27.595 14.935 32.441 hybrid contribution 1.033 0.865 -1.957 2.376 sum 9.275 28.459 12.978 32.625 Atomic orbital electron populations 1.20473 0.87372 1.04172 1.03229 1.21086 0.94657 0.87218 1.00341 1.21220 0.92353 0.98903 1.17871 1.23843 0.98211 0.92112 0.99401 1.77382 0.96035 1.13286 1.24293 1.47909 1.04209 1.04279 1.57710 1.21413 1.03569 0.80613 0.95581 1.20843 0.77568 0.82274 0.91522 1.90794 1.48580 1.54839 1.45373 1.45776 1.69087 1.12925 1.09459 1.22077 1.02538 0.95800 0.83078 1.22242 0.93501 0.86717 0.93706 0.86368 1.86654 1.23003 1.69816 1.56388 1.22538 0.98631 0.92903 0.95921 1.59979 1.55145 1.02396 1.12229 1.21720 0.99905 0.96311 0.90576 1.19671 0.84930 0.87132 0.84815 1.90575 1.55680 1.69133 1.29128 1.42200 1.58319 1.16166 1.06254 1.19441 1.38164 0.89013 0.96877 0.86255 1.25040 0.97296 0.95730 0.98043 1.69625 1.42951 1.11001 1.28457 0.86668 0.79174 0.79321 0.84191 1.19664 1.20131 1.19500 0.89997 0.89366 0.91319 0.83497 0.79949 0.85524 0.85925 0.75618 0.90143 0.91002 0.77820 0.89862 0.94881 0.82125 0.89461 0.93759 0.79694 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.47 9.90 36.00 0.36 -0.11 16 2 C 0.09 0.79 6.93 -82.26 -0.57 0.22 16 3 C -0.27 -2.31 10.72 -40.01 -0.43 -2.73 16 4 C 0.05 0.47 12.03 -17.37 -0.21 0.26 16 5 N -0.29 -3.31 12.58 30.62 0.39 -2.92 16 6 N -0.36 -3.41 3.10 -58.31 -0.18 -3.59 16 7 C 0.11 0.71 6.54 -5.19 -0.03 0.67 16 8 C 0.49 4.28 7.90 -10.98 -0.09 4.20 16 9 O -0.52 -7.05 16.43 5.55 0.09 -6.95 16 10 N -0.72 -4.62 5.45 -60.29 -0.33 -4.95 16 11 C 0.09 0.65 5.34 -4.04 -0.02 0.63 16 12 C 0.10 0.78 3.29 -26.73 -0.09 0.69 16 13 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 14 O -0.55 -4.65 12.60 -35.23 -0.44 -5.10 16 15 C 0.03 0.30 5.36 -3.82 -0.02 0.28 16 16 N -0.66 -9.55 6.13 -115.06 -0.70 -10.25 16 17 C 0.05 0.75 6.17 -4.97 -0.03 0.72 16 18 C 0.45 10.04 7.82 -10.99 -0.09 9.95 16 19 O -0.56 -15.03 15.78 5.55 0.09 -14.94 16 20 N -0.59 -13.90 5.09 -10.96 -0.06 -13.95 16 21 C -0.31 -8.62 10.16 -14.93 -0.15 -8.78 16 22 H 0.12 3.85 7.39 -52.48 -0.39 3.46 16 23 C 0.04 1.14 5.50 -17.46 -0.10 1.05 16 24 N -0.88 -25.58 13.96 55.50 0.77 -24.81 16 25 Si 0.88 19.18 27.74 -169.99 -4.71 14.47 16 26 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 27 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 28 H -0.27 -5.34 6.52 56.52 0.37 -4.98 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.34 7.73 -51.93 -0.40 -0.06 16 32 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.18 1.08 8.06 -52.49 -0.42 0.65 16 34 H 0.13 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.12 0.32 7.67 -51.93 -0.40 -0.07 16 36 H 0.41 1.79 8.35 -40.82 -0.34 1.44 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.57 8.14 -51.94 -0.42 0.14 16 39 H 0.37 2.14 9.05 45.56 0.41 2.55 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.36 5.56 7.99 -39.29 -0.31 5.24 16 43 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.37 7.62 5.76 -40.82 -0.24 7.39 16 46 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 397.00 15.07 5.98 5.98 Total: -1.00 -39.38 397.00 -6.48 -45.86 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -5.91 Total: 14.11 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -1.47 Total: 7.04 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: -0.11 Total: -60.48 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.27 Total: -27.00 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -4.71 Total: 14.47 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -39.38 -6.48 -45.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715602397.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.404 kcal (2) G-P(sol) polarization free energy of solvation -39.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds