Wall clock time and date at job start Tue Mar 31 2020 23:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35316 * 126.13099 * 2 1 4 4 C 1.39868 * 107.92272 * 179.97438 * 3 2 1 5 5 N 1.30837 * 108.20148 * 359.97438 * 4 3 2 6 6 N 1.34954 * 126.12532 * 179.97438 * 2 1 3 7 7 C 1.46494 * 126.03475 * 359.75813 * 6 2 1 8 8 C 1.50704 * 109.47311 * 90.00006 * 7 6 2 9 9 O 1.21287 * 119.99779 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00342 * 179.97438 * 8 7 6 11 11 C 1.46502 * 120.00086 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47180 * 180.02562 * 11 10 8 13 13 H 1.09006 * 109.47003 * 59.99579 * 12 11 10 14 14 O 1.42896 * 109.47278 * 300.00306 * 12 11 10 15 15 C 1.52997 * 109.47108 * 179.97438 * 12 11 10 16 16 N 1.46903 * 109.47162 * 184.99785 * 15 12 11 17 17 C 1.46899 * 111.00229 * 179.97438 * 16 15 12 18 18 C 1.50704 * 109.47283 * 179.97438 * 17 16 15 19 19 O 1.21293 * 119.99549 * 0.02562 * 18 17 16 20 20 N 1.34769 * 119.99898 * 180.02562 * 18 17 16 21 21 C 1.37096 * 119.99851 * 180.02562 * 20 18 17 22 22 H 1.08005 * 120.00178 * 0.02562 * 21 20 18 23 23 C 1.38954 * 120.00090 * 180.02562 * 21 20 18 24 24 N 1.31415 * 119.99870 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 120.00015 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.47174 * 90.00099 * 25 23 21 27 27 H 1.48495 * 109.47555 * 210.00327 * 25 23 21 28 28 H 1.48506 * 109.47142 * 330.00358 * 25 23 21 29 29 H 1.09001 * 109.47414 * 270.02695 * 1 2 3 30 30 H 1.09002 * 109.47392 * 30.02818 * 1 2 3 31 31 H 1.09000 * 109.47238 * 150.02741 * 1 2 3 32 32 H 1.07999 * 126.03437 * 359.97433 * 3 2 1 33 33 H 1.08001 * 125.89990 * 179.97438 * 4 3 2 34 34 H 1.09004 * 109.47324 * 209.99797 * 7 6 2 35 35 H 1.08997 * 109.47734 * 329.99813 * 7 6 2 36 36 H 0.96998 * 120.00079 * 0.02562 * 10 8 7 37 37 H 1.09006 * 109.46964 * 299.99978 * 11 10 8 38 38 H 1.08989 * 109.47328 * 60.00024 * 11 10 8 39 39 H 0.96702 * 113.99579 * 299.99714 * 14 12 11 40 40 H 1.09002 * 109.47435 * 305.00174 * 15 12 11 41 41 H 1.08997 * 109.47002 * 65.00176 * 15 12 11 42 42 H 1.00898 * 110.99931 * 303.96144 * 16 15 12 43 43 H 1.08993 * 109.47600 * 300.00636 * 17 16 15 44 44 H 1.09002 * 109.46631 * 60.00826 * 17 16 15 45 45 H 0.96995 * 120.00124 * 0.02562 * 20 18 17 46 46 H 0.97001 * 119.99308 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 0.0006 5 7 3.6333 -0.6525 0.0015 6 7 2.3026 -1.0901 0.0005 7 6 1.8538 -2.4846 0.0061 8 6 1.6950 -2.9670 -1.4128 9 8 1.9329 -2.2193 -2.3377 10 7 1.2888 -4.2292 -1.6540 11 6 1.1350 -4.6982 -3.0334 12 6 0.6662 -6.1546 -3.0275 13 1 -0.2908 -6.2262 -2.5105 14 8 1.6328 -6.9635 -2.3542 15 6 0.5050 -6.6443 -4.4680 16 7 -0.0585 -8.0009 -4.4639 17 6 -0.2283 -8.5047 -5.8334 18 6 -0.8065 -9.8956 -5.7889 19 8 -1.0534 -10.4159 -4.7214 20 7 -1.0493 -10.5614 -6.9353 21 6 -1.5758 -11.8266 -6.8949 22 1 -1.7964 -12.2896 -5.9444 23 6 -1.8257 -12.5132 -8.0768 24 7 -2.3309 -13.7258 -8.0380 25 14 -1.4449 -11.7122 -9.7207 26 1 -0.0512 -12.0361 -10.1182 27 1 -2.3848 -12.2238 -10.7503 28 1 -1.5958 -10.2397 -9.6007 29 1 -0.3634 0.0005 1.0277 30 1 -0.3634 0.8897 -0.5143 31 1 -0.3634 -0.8902 -0.5134 32 1 1.9741 2.1210 -0.0004 33 1 4.5084 1.2890 0.0004 34 1 2.5914 -3.1016 0.5192 35 1 0.8971 -2.5564 0.5234 36 1 1.0982 -4.8271 -0.9144 37 1 0.3973 -4.0815 -3.5467 38 1 2.0917 -4.6263 -3.5504 39 1 2.5102 -6.9479 -2.7605 40 1 -0.1650 -5.9742 -5.0068 41 1 1.4782 -6.6567 -4.9586 42 1 0.5115 -8.6276 -3.9158 43 1 -0.9035 -7.8474 -6.3812 44 1 0.7397 -8.5299 -6.3338 45 1 -0.8516 -10.1454 -7.7889 46 1 -2.5049 -14.2052 -8.8631 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715602397.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:55 Heat of formation + Delta-G solvation = -71.178269 kcal Electronic energy + Delta-G solvation = -27853.527293 eV Core-core repulsion = 23585.823737 eV Total energy + Delta-G solvation = -4267.703556 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.27209 -40.76816 -40.31429 -39.01443 -36.36094 -35.73304 -35.34438 -34.49304 -33.75220 -32.98085 -31.49849 -29.29551 -28.05416 -27.79610 -26.27276 -24.42614 -22.77356 -22.35089 -21.81146 -21.30030 -20.64163 -20.27955 -18.67152 -18.27781 -17.80720 -17.48630 -17.24246 -16.88171 -16.63802 -16.38746 -16.14596 -15.96634 -15.55251 -15.12192 -15.06449 -14.99957 -14.69730 -14.52582 -14.46365 -14.36688 -13.89959 -13.79736 -13.65245 -13.56286 -13.24216 -13.10254 -12.96575 -12.90741 -12.71374 -12.41914 -11.98772 -11.98100 -11.58452 -11.52047 -11.46430 -11.13657 -10.43708 -10.25656 -10.24958 -10.20258 -9.45236 -9.35074 -8.41858 -6.03017 0.81567 1.30107 1.35198 1.40699 1.42556 1.44485 1.92792 1.95005 2.11119 2.22648 2.71434 3.14680 3.30853 3.44589 3.55927 3.65679 3.77042 3.85429 3.97542 4.09167 4.12842 4.15403 4.16903 4.32776 4.39492 4.47392 4.52480 4.65971 4.70546 4.74254 4.79127 4.83919 5.02143 5.07629 5.24639 5.25821 5.51675 5.72069 5.88296 6.01350 6.04032 6.36338 6.40249 6.59068 6.74197 6.75321 6.87444 7.06829 7.39064 7.95799 8.75775 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.034651 B = 0.001445 C = 0.001431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.863560 B =19369.616034 C =19559.550110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.085 3.915 3 C -0.292 4.292 4 C 0.041 3.959 5 N -0.336 5.336 6 N -0.368 5.368 7 C 0.110 3.890 8 C 0.496 3.504 9 O -0.575 6.575 10 N -0.705 5.705 11 C 0.098 3.902 12 C 0.112 3.888 13 H 0.111 0.889 14 O -0.566 6.566 15 C 0.031 3.969 16 N -0.683 5.683 17 C 0.062 3.938 18 C 0.447 3.553 19 O -0.615 6.615 20 N -0.591 5.591 21 C -0.331 4.331 22 H 0.055 0.945 23 C -0.014 4.014 24 N -0.934 5.934 25 Si 0.965 3.035 26 H -0.257 1.257 27 H -0.276 1.276 28 H -0.231 1.231 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.166 0.834 33 H 0.204 0.796 34 H 0.142 0.858 35 H 0.161 0.839 36 H 0.420 0.580 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.387 0.613 40 H 0.095 0.905 41 H 0.052 0.948 42 H 0.348 0.652 43 H 0.115 0.885 44 H 0.078 0.922 45 H 0.390 0.610 46 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.275 31.458 13.388 35.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.042 4.042 3 C -0.321 4.321 4 C -0.145 4.145 5 N -0.157 5.157 6 N -0.151 5.151 7 C -0.015 4.015 8 C 0.281 3.719 9 O -0.453 6.453 10 N -0.358 5.358 11 C -0.027 4.027 12 C 0.053 3.947 13 H 0.129 0.871 14 O -0.373 6.373 15 C -0.098 4.098 16 N -0.317 5.317 17 C -0.071 4.071 18 C 0.235 3.765 19 O -0.499 6.499 20 N -0.232 5.232 21 C -0.460 4.460 22 H 0.073 0.927 23 C -0.213 4.213 24 N -0.575 5.575 25 Si 0.785 3.215 26 H -0.182 1.182 27 H -0.201 1.201 28 H -0.154 1.154 29 H 0.122 0.878 30 H 0.114 0.886 31 H 0.088 0.912 32 H 0.183 0.817 33 H 0.221 0.779 34 H 0.160 0.840 35 H 0.178 0.822 36 H 0.258 0.742 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.236 0.764 40 H 0.113 0.887 41 H 0.070 0.930 42 H 0.168 0.832 43 H 0.133 0.867 44 H 0.095 0.905 45 H 0.226 0.774 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.730 30.340 13.786 34.450 hybrid contribution 0.864 -0.040 -1.439 1.679 sum 9.594 30.301 12.347 34.097 Atomic orbital electron populations 1.20584 0.85015 1.04601 1.04752 1.21722 0.96241 0.87053 0.99176 1.21596 0.92173 1.00075 1.18212 1.24335 0.99577 0.91952 0.98596 1.77287 0.97757 1.14446 1.26206 1.48153 1.03776 1.05494 1.57661 1.21736 1.05885 0.79599 0.94262 1.21252 0.76469 0.82153 0.91993 1.90770 1.51195 1.56301 1.47076 1.45681 1.67914 1.12518 1.09708 1.21939 1.02234 0.95143 0.83407 1.22027 0.93197 0.86805 0.92717 0.87149 1.86635 1.23897 1.69987 1.56804 1.22642 0.99610 0.90322 0.97246 1.59964 1.56254 1.04125 1.11331 1.21643 1.01489 0.91723 0.92207 1.21029 0.82803 0.89216 0.83498 1.90552 1.57228 1.71031 1.31103 1.42029 1.58666 1.14773 1.07764 1.19022 1.40443 0.91495 0.95059 0.92710 1.26119 0.96110 0.96058 1.02999 1.69810 1.44184 1.13190 1.30277 0.85358 0.79322 0.80206 0.76586 1.18172 1.20076 1.15379 0.87792 0.88582 0.91215 0.81651 0.77892 0.84027 0.82153 0.74203 0.90341 0.91337 0.76419 0.88660 0.93006 0.83227 0.86726 0.90468 0.77442 0.91141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.71 9.90 71.23 0.70 -0.01 16 2 C 0.09 1.34 6.93 41.40 0.29 1.62 16 3 C -0.29 -4.68 10.72 21.99 0.24 -4.45 16 4 C 0.04 0.75 12.03 85.24 1.02 1.77 16 5 N -0.34 -7.67 12.58 -57.02 -0.72 -8.39 16 6 N -0.37 -6.68 3.10 -338.41 -1.05 -7.73 16 7 C 0.11 1.18 6.54 85.64 0.56 1.74 16 8 C 0.50 7.98 7.90 87.66 0.69 8.67 16 9 O -0.57 -15.32 16.43 -3.05 -0.05 -15.37 16 10 N -0.70 -7.78 5.45 -463.05 -2.52 -10.31 16 11 C 0.10 1.22 5.34 86.38 0.46 1.68 16 12 C 0.11 1.54 3.29 30.59 0.10 1.64 16 13 H 0.11 1.73 8.14 -2.38 -0.02 1.71 16 14 O -0.57 -8.47 12.60 -148.98 -1.88 -10.35 16 15 C 0.03 0.51 5.36 86.30 0.46 0.97 16 16 N -0.68 -18.20 6.13 -517.93 -3.17 -21.37 16 17 C 0.06 1.76 6.17 85.56 0.53 2.29 16 18 C 0.45 19.77 7.82 87.66 0.69 20.45 16 19 O -0.61 -33.85 15.78 -3.07 -0.05 -33.90 16 20 N -0.59 -27.44 5.09 -306.98 -1.56 -29.00 16 21 C -0.33 -19.31 10.16 84.04 0.85 -18.46 16 22 H 0.05 3.82 7.39 -2.91 -0.02 3.80 16 23 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 24 N -0.93 -56.10 13.96 21.66 0.30 -55.80 16 25 Si 0.97 38.28 27.74 68.60 1.90 40.18 16 26 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 27 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 28 H -0.23 -7.63 6.52 99.48 0.65 -6.98 16 29 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 0.54 7.73 -2.39 -0.02 0.52 16 32 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 33 H 0.20 2.35 8.06 -2.91 -0.02 2.33 16 34 H 0.14 1.05 8.14 -2.38 -0.02 1.04 16 35 H 0.16 0.39 7.67 -2.39 -0.02 0.37 16 36 H 0.42 2.75 8.35 -92.71 -0.77 1.97 16 37 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.39 3.62 9.05 -74.06 -0.67 2.95 16 40 H 0.10 1.35 8.14 -2.39 -0.02 1.34 16 41 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.35 10.42 7.99 -89.70 -0.72 9.70 16 43 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 44 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.39 14.85 5.76 -92.71 -0.53 14.31 16 46 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -92.79 397.00 -3.43 -96.23 By element: Atomic # 1 Polarization: 39.92 SS G_CDS: -1.70 Total: 38.21 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: 7.06 Total: 17.60 kcal Atomic # 7 Polarization: -123.88 SS G_CDS: -8.72 Total: -132.60 kcal Atomic # 8 Polarization: -57.64 SS G_CDS: -1.98 Total: -59.62 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 1.90 Total: 40.18 kcal Total: -92.79 -3.43 -96.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715602397.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.048 kcal (2) G-P(sol) polarization free energy of solvation -92.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds