Wall clock time and date at job start Tue Mar 31 2020 23:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35314 * 126.12759 * 2 1 4 4 C 1.39872 * 107.91954 * 179.90471 * 3 2 1 5 5 N 1.30835 * 108.20422 * 0.36600 * 4 3 2 6 6 N 1.34949 * 126.12355 * 180.31496 * 2 1 3 7 7 C 1.46492 * 126.04227 * 359.94220 * 6 2 1 8 8 C 1.50701 * 109.47276 * 89.99694 * 7 6 2 9 9 O 1.21278 * 119.99813 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00011 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99647 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.46607 * 179.97438 * 11 10 8 13 13 H 1.08997 * 109.47506 * 304.99773 * 12 11 10 14 14 O 1.42901 * 109.47010 * 65.00276 * 12 11 10 15 15 C 1.53004 * 109.46773 * 184.99730 * 12 11 10 16 16 N 1.46904 * 109.46976 * 179.97438 * 15 12 11 17 17 C 1.46894 * 110.99916 * 179.97438 * 16 15 12 18 18 C 1.50707 * 109.47091 * 180.02562 * 17 16 15 19 19 O 1.21282 * 119.99946 * 0.02562 * 18 17 16 20 20 N 1.34776 * 119.99758 * 180.02562 * 18 17 16 21 21 C 1.37094 * 119.99732 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00456 * 0.02562 * 21 20 18 23 23 C 1.38952 * 119.99935 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99894 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 120.00036 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.46711 * 89.99886 * 25 23 21 27 27 H 1.48498 * 109.46933 * 210.00018 * 25 23 21 28 28 H 1.48494 * 109.46924 * 330.00231 * 25 23 21 29 29 H 1.09002 * 109.47152 * 269.68517 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.68618 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.68598 * 1 2 3 32 32 H 1.08000 * 126.04140 * 0.04339 * 3 2 1 33 33 H 1.07995 * 125.89631 * 180.14711 * 4 3 2 34 34 H 1.09001 * 109.47504 * 210.00369 * 7 6 2 35 35 H 1.09010 * 109.47188 * 330.00050 * 7 6 2 36 36 H 0.96997 * 120.00400 * 0.02562 * 10 8 7 37 37 H 1.08997 * 109.47203 * 299.99459 * 11 10 8 38 38 H 1.08998 * 109.47119 * 60.00240 * 11 10 8 39 39 H 0.96701 * 114.00262 * 59.99556 * 14 12 11 40 40 H 1.08997 * 109.47140 * 300.00267 * 15 12 11 41 41 H 1.09003 * 109.46708 * 60.00725 * 15 12 11 42 42 H 1.00901 * 110.99453 * 56.04936 * 16 15 12 43 43 H 1.08994 * 109.47461 * 300.00222 * 17 16 15 44 44 H 1.08999 * 109.47116 * 60.00675 * 17 16 15 45 45 H 0.97001 * 120.00179 * 0.02562 * 20 18 17 46 46 H 0.97003 * 120.00046 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 0.0022 5 7 3.6334 -0.6524 -0.0044 6 7 2.3026 -1.0900 -0.0060 7 6 1.8539 -2.4845 -0.0125 8 6 1.6989 -2.9558 -1.4355 9 8 1.9399 -2.2012 -2.3538 10 7 1.2923 -4.2158 -1.6876 11 6 1.1421 -4.6740 -3.0710 12 6 0.6734 -6.1305 -3.0777 13 1 1.3637 -6.7371 -2.4915 14 8 -0.6346 -6.2125 -2.5081 15 6 0.6361 -6.6476 -4.5172 16 7 0.1867 -8.0462 -4.5236 17 6 0.1380 -8.5771 -5.8923 18 6 -0.3268 -10.0104 -5.8589 19 8 -0.5919 -10.5373 -4.7992 20 7 -0.4479 -10.7064 -7.0067 21 6 -0.8702 -12.0103 -6.9762 22 1 -1.1063 -12.4797 -6.0326 23 6 -0.9956 -12.7278 -8.1595 24 7 -1.4009 -13.9775 -8.1304 25 14 -0.5881 -11.9159 -9.7918 26 1 0.8477 -12.1286 -10.1055 27 1 -1.4231 -12.5140 -10.8642 28 1 -0.8649 -10.4597 -9.7030 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5187 31 1 -0.3633 0.8928 -0.5090 32 1 1.9741 2.1211 0.0007 33 1 4.5084 1.2891 0.0050 34 1 2.5902 -3.1055 0.4978 35 1 0.8958 -2.5604 0.5018 36 1 1.0992 -4.8192 -0.9531 37 1 0.4063 -4.0528 -3.5816 38 1 2.1005 -4.5988 -3.5847 39 1 -1.3021 -5.6957 -2.9798 40 1 -0.0541 -6.0410 -5.1034 41 1 1.6339 -6.5850 -4.9516 42 1 -0.7084 -8.1403 -4.0675 43 1 -0.5563 -7.9842 -6.4876 44 1 1.1320 -8.5275 -6.3369 45 1 -0.2356 -10.2850 -7.8542 46 1 -1.4881 -14.4785 -8.9564 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715602398.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:59 Heat of formation + Delta-G solvation = -34.156296 kcal Electronic energy + Delta-G solvation = -27861.153737 eV Core-core repulsion = 23595.055574 eV Total energy + Delta-G solvation = -4266.098163 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.68041 -40.08626 -38.74027 -38.07303 -35.13990 -34.68541 -33.91914 -33.87756 -32.47626 -31.69756 -30.68958 -28.39553 -27.35155 -26.93631 -24.85468 -23.22443 -22.08528 -21.71289 -21.19025 -20.06076 -19.42660 -18.42693 -18.07409 -17.46401 -16.92891 -16.76728 -15.94052 -15.85013 -15.70961 -15.46046 -15.02101 -14.88309 -14.56414 -14.47401 -14.20074 -13.94723 -13.67346 -13.46548 -13.39032 -13.18487 -13.14460 -13.08224 -12.73366 -12.49698 -12.43942 -12.14419 -11.95121 -11.78503 -11.32369 -11.17375 -10.95254 -10.74279 -10.62286 -10.43452 -9.99850 -9.62211 -9.60034 -9.57970 -8.84968 -8.64031 -8.25689 -8.19660 -6.33466 -3.85081 1.41135 1.94021 2.03753 2.54017 2.69569 2.99920 3.04835 3.13057 3.69983 3.80403 4.00229 4.06147 4.07937 4.14627 4.22469 4.46249 4.52645 4.60934 4.63991 4.75038 4.76251 4.88320 4.98538 5.08685 5.19391 5.25014 5.29880 5.32750 5.39436 5.42425 5.53651 5.72482 5.74255 5.78622 5.85050 5.88501 6.30444 6.55889 6.92853 6.95155 7.24988 7.36666 7.51554 7.55568 7.64652 8.11787 8.57006 8.92401 9.39664 9.79578 10.79599 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.035927 B = 0.001446 C = 0.001427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.163377 B =19365.401309 C =19621.314880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.093 3.907 3 C -0.274 4.274 4 C 0.051 3.949 5 N -0.289 5.289 6 N -0.358 5.358 7 C 0.114 3.886 8 C 0.494 3.506 9 O -0.521 6.521 10 N -0.719 5.719 11 C 0.090 3.910 12 C 0.099 3.901 13 H 0.118 0.882 14 O -0.552 6.552 15 C 0.030 3.970 16 N -0.663 5.663 17 C 0.048 3.952 18 C 0.449 3.551 19 O -0.563 6.563 20 N -0.590 5.590 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.880 5.880 25 Si 0.880 3.120 26 H -0.270 1.270 27 H -0.276 1.276 28 H -0.270 1.270 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.147 0.853 33 H 0.184 0.816 34 H 0.127 0.873 35 H 0.123 0.877 36 H 0.408 0.592 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.374 0.626 40 H 0.033 0.967 41 H 0.083 0.917 42 H 0.358 0.642 43 H 0.044 0.956 44 H 0.087 0.913 45 H 0.370 0.630 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.353 30.178 14.637 33.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.033 4.033 3 C -0.303 4.303 4 C -0.136 4.136 5 N -0.109 5.109 6 N -0.141 5.141 7 C -0.012 4.012 8 C 0.278 3.722 9 O -0.396 6.396 10 N -0.373 5.373 11 C -0.035 4.035 12 C 0.039 3.961 13 H 0.136 0.864 14 O -0.357 6.357 15 C -0.100 4.100 16 N -0.297 5.297 17 C -0.085 4.085 18 C 0.235 3.765 19 O -0.445 6.445 20 N -0.230 5.230 21 C -0.435 4.435 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.520 5.520 25 Si 0.707 3.293 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.165 0.835 33 H 0.201 0.799 34 H 0.145 0.855 35 H 0.141 0.859 36 H 0.243 0.757 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.221 0.779 40 H 0.051 0.949 41 H 0.102 0.898 42 H 0.179 0.821 43 H 0.062 0.938 44 H 0.105 0.895 45 H 0.203 0.797 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.894 28.316 15.110 32.632 hybrid contribution -1.219 1.690 -2.065 2.934 sum 4.674 30.006 13.044 33.051 Atomic orbital electron populations 1.20471 0.87397 1.04130 1.03213 1.21081 0.94641 0.87230 1.00395 1.21221 0.92359 0.98893 1.17855 1.23846 0.98209 0.92118 0.99393 1.77391 0.96016 1.13290 1.24232 1.47914 1.04215 1.04287 1.57700 1.21416 1.03572 0.80661 0.95541 1.20842 0.77547 0.82298 0.91513 1.90791 1.48530 1.54268 1.45981 1.45795 1.68944 1.13147 1.09387 1.22093 1.02787 0.95637 0.82948 1.22232 0.85623 0.93137 0.95113 0.86449 1.86665 1.18283 1.73701 1.57071 1.22535 1.01795 0.90097 0.95610 1.59971 1.37295 1.15646 1.16760 1.21723 1.01465 0.95156 0.90186 1.19671 0.84586 0.87561 0.84724 1.90573 1.53582 1.70646 1.29681 1.42202 1.61152 1.12985 1.06618 1.19439 1.41543 0.85349 0.97161 0.86255 1.25038 0.97460 0.95584 0.98021 1.69621 1.45704 1.08337 1.28380 0.86666 0.79314 0.79261 0.84095 1.19584 1.20163 1.19577 0.90005 0.91355 0.89390 0.83503 0.79941 0.85526 0.85907 0.75672 0.90973 0.90163 0.77915 0.94928 0.89833 0.82130 0.93780 0.89454 0.79695 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.46 9.90 36.01 0.36 -0.10 16 2 C 0.09 0.78 6.93 -82.26 -0.57 0.21 16 3 C -0.27 -2.30 10.72 -40.01 -0.43 -2.73 16 4 C 0.05 0.47 12.03 -17.37 -0.21 0.26 16 5 N -0.29 -3.31 12.58 30.62 0.39 -2.93 16 6 N -0.36 -3.41 3.10 -58.31 -0.18 -3.59 16 7 C 0.11 0.70 6.54 -5.20 -0.03 0.67 16 8 C 0.49 4.28 7.90 -10.99 -0.09 4.19 16 9 O -0.52 -7.04 16.43 5.56 0.09 -6.95 16 10 N -0.72 -4.62 5.50 -60.29 -0.33 -4.95 16 11 C 0.09 0.65 5.31 -4.04 -0.02 0.63 16 12 C 0.10 0.78 3.27 -26.73 -0.09 0.69 16 13 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 14 O -0.55 -4.59 12.62 -35.23 -0.44 -5.03 16 15 C 0.03 0.29 5.39 -3.82 -0.02 0.27 16 16 N -0.66 -9.55 6.13 -115.06 -0.70 -10.25 16 17 C 0.05 0.75 6.17 -4.98 -0.03 0.72 16 18 C 0.45 10.05 7.82 -10.98 -0.09 9.96 16 19 O -0.56 -15.04 15.78 5.56 0.09 -14.95 16 20 N -0.59 -13.91 5.09 -10.96 -0.06 -13.97 16 21 C -0.31 -8.63 10.16 -14.93 -0.15 -8.78 16 22 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 23 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 24 N -0.88 -25.60 13.96 55.50 0.77 -24.82 16 25 Si 0.88 19.20 27.74 -169.99 -4.71 14.49 16 26 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 27 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 28 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.33 7.72 -51.93 -0.40 -0.07 16 31 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.15 0.88 8.06 -52.49 -0.42 0.45 16 33 H 0.18 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.13 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.12 0.33 7.66 -51.92 -0.40 -0.07 16 36 H 0.41 1.76 8.47 -40.82 -0.35 1.41 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.37 2.02 9.05 45.56 0.41 2.44 16 40 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.36 5.52 7.82 -39.29 -0.31 5.22 16 43 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.37 7.63 5.76 -40.82 -0.24 7.39 16 46 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 397.00 15.07 5.98 5.98 Total: -1.00 -39.52 397.00 -6.48 -46.00 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -5.90 Total: 13.91 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: -1.47 Total: 7.06 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: -0.11 Total: -60.51 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.27 Total: -26.93 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.71 Total: 14.49 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -39.52 -6.48 -46.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715602398.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.848 kcal (2) G-P(sol) polarization free energy of solvation -39.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds