Wall clock time and date at job start Tue Mar 31 2020 23:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35314 * 126.12759 * 2 1 4 4 C 1.39872 * 107.91954 * 179.90471 * 3 2 1 5 5 N 1.30835 * 108.20422 * 0.36600 * 4 3 2 6 6 N 1.34949 * 126.12355 * 180.31496 * 2 1 3 7 7 C 1.46492 * 126.04227 * 359.94220 * 6 2 1 8 8 C 1.50701 * 109.47276 * 89.99694 * 7 6 2 9 9 O 1.21278 * 119.99813 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00011 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99647 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.46607 * 179.97438 * 11 10 8 13 13 H 1.08997 * 109.47506 * 304.99773 * 12 11 10 14 14 O 1.42901 * 109.47010 * 65.00276 * 12 11 10 15 15 C 1.53004 * 109.46773 * 184.99730 * 12 11 10 16 16 N 1.46904 * 109.46976 * 179.97438 * 15 12 11 17 17 C 1.46894 * 110.99916 * 179.97438 * 16 15 12 18 18 C 1.50707 * 109.47091 * 180.02562 * 17 16 15 19 19 O 1.21282 * 119.99946 * 0.02562 * 18 17 16 20 20 N 1.34776 * 119.99758 * 180.02562 * 18 17 16 21 21 C 1.37094 * 119.99732 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00456 * 0.02562 * 21 20 18 23 23 C 1.38952 * 119.99935 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99894 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 120.00036 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.46711 * 89.99886 * 25 23 21 27 27 H 1.48498 * 109.46933 * 210.00018 * 25 23 21 28 28 H 1.48494 * 109.46924 * 330.00231 * 25 23 21 29 29 H 1.09002 * 109.47152 * 269.68517 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.68618 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.68598 * 1 2 3 32 32 H 1.08000 * 126.04140 * 0.04339 * 3 2 1 33 33 H 1.07995 * 125.89631 * 180.14711 * 4 3 2 34 34 H 1.09001 * 109.47504 * 210.00369 * 7 6 2 35 35 H 1.09010 * 109.47188 * 330.00050 * 7 6 2 36 36 H 0.96997 * 120.00400 * 0.02562 * 10 8 7 37 37 H 1.08997 * 109.47203 * 299.99459 * 11 10 8 38 38 H 1.08998 * 109.47119 * 60.00240 * 11 10 8 39 39 H 0.96701 * 114.00262 * 59.99556 * 14 12 11 40 40 H 1.08997 * 109.47140 * 300.00267 * 15 12 11 41 41 H 1.09003 * 109.46708 * 60.00725 * 15 12 11 42 42 H 1.00901 * 110.99453 * 56.04936 * 16 15 12 43 43 H 1.08994 * 109.47461 * 300.00222 * 17 16 15 44 44 H 1.08999 * 109.47116 * 60.00675 * 17 16 15 45 45 H 0.97001 * 120.00179 * 0.02562 * 20 18 17 46 46 H 0.97003 * 120.00046 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 0.0022 5 7 3.6334 -0.6524 -0.0044 6 7 2.3026 -1.0900 -0.0060 7 6 1.8539 -2.4845 -0.0125 8 6 1.6989 -2.9558 -1.4355 9 8 1.9399 -2.2012 -2.3538 10 7 1.2923 -4.2158 -1.6876 11 6 1.1421 -4.6740 -3.0710 12 6 0.6734 -6.1305 -3.0777 13 1 1.3637 -6.7371 -2.4915 14 8 -0.6346 -6.2125 -2.5081 15 6 0.6361 -6.6476 -4.5172 16 7 0.1867 -8.0462 -4.5236 17 6 0.1380 -8.5771 -5.8923 18 6 -0.3268 -10.0104 -5.8589 19 8 -0.5919 -10.5373 -4.7992 20 7 -0.4479 -10.7064 -7.0067 21 6 -0.8702 -12.0103 -6.9762 22 1 -1.1063 -12.4797 -6.0326 23 6 -0.9956 -12.7278 -8.1595 24 7 -1.4009 -13.9775 -8.1304 25 14 -0.5881 -11.9159 -9.7918 26 1 0.8477 -12.1286 -10.1055 27 1 -1.4231 -12.5140 -10.8642 28 1 -0.8649 -10.4597 -9.7030 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5187 31 1 -0.3633 0.8928 -0.5090 32 1 1.9741 2.1211 0.0007 33 1 4.5084 1.2891 0.0050 34 1 2.5902 -3.1055 0.4978 35 1 0.8958 -2.5604 0.5018 36 1 1.0992 -4.8192 -0.9531 37 1 0.4063 -4.0528 -3.5816 38 1 2.1005 -4.5988 -3.5847 39 1 -1.3021 -5.6957 -2.9798 40 1 -0.0541 -6.0410 -5.1034 41 1 1.6339 -6.5850 -4.9516 42 1 -0.7084 -8.1403 -4.0675 43 1 -0.5563 -7.9842 -6.4876 44 1 1.1320 -8.5275 -6.3369 45 1 -0.2356 -10.2850 -7.8542 46 1 -1.4881 -14.4785 -8.9564 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715602398.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:58 Heat of formation + Delta-G solvation = -71.050677 kcal Electronic energy + Delta-G solvation = -27862.753598 eV Core-core repulsion = 23595.055574 eV Total energy + Delta-G solvation = -4267.698023 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.27256 -40.76845 -40.31573 -39.01780 -36.35058 -35.73146 -35.35423 -34.49484 -33.75152 -32.98079 -31.49264 -29.29532 -28.05507 -27.79678 -26.27315 -24.43572 -22.76767 -22.35553 -21.81047 -21.30007 -20.64040 -20.28159 -18.67261 -18.28817 -17.80166 -17.47976 -17.25097 -16.83878 -16.64610 -16.42511 -16.15527 -15.94179 -15.52836 -15.20524 -15.06656 -14.92685 -14.74784 -14.51104 -14.46290 -14.35241 -13.89260 -13.81905 -13.62316 -13.56363 -13.24278 -13.09973 -12.95914 -12.90875 -12.71307 -12.41723 -11.99993 -11.98503 -11.58251 -11.52142 -11.46889 -11.12725 -10.43617 -10.25491 -10.25166 -10.20465 -9.45233 -9.33894 -8.41797 -6.02949 0.81378 1.29747 1.35597 1.40546 1.43010 1.44342 1.92798 1.95003 2.11001 2.22651 2.71473 3.14506 3.30243 3.45426 3.57035 3.64091 3.77109 3.86040 3.99049 4.09102 4.10677 4.15599 4.16833 4.32673 4.39407 4.47018 4.52226 4.65822 4.70422 4.74400 4.79096 4.83870 5.01877 5.06952 5.24807 5.26037 5.51691 5.71948 5.88392 6.01469 6.04134 6.37461 6.40153 6.59147 6.74271 6.77911 6.87539 7.06457 7.39136 7.95906 8.75839 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.035927 B = 0.001446 C = 0.001427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.163377 B =19365.401309 C =19621.314880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.085 3.915 3 C -0.292 4.292 4 C 0.041 3.959 5 N -0.337 5.337 6 N -0.368 5.368 7 C 0.110 3.890 8 C 0.496 3.504 9 O -0.574 6.574 10 N -0.705 5.705 11 C 0.098 3.902 12 C 0.113 3.887 13 H 0.108 0.892 14 O -0.565 6.565 15 C 0.031 3.969 16 N -0.684 5.684 17 C 0.062 3.938 18 C 0.447 3.553 19 O -0.614 6.614 20 N -0.591 5.591 21 C -0.331 4.331 22 H 0.055 0.945 23 C -0.014 4.014 24 N -0.934 5.934 25 Si 0.966 3.034 26 H -0.258 1.258 27 H -0.275 1.275 28 H -0.230 1.230 29 H 0.103 0.897 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.166 0.834 33 H 0.204 0.796 34 H 0.142 0.858 35 H 0.161 0.839 36 H 0.420 0.580 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.387 0.613 40 H 0.054 0.946 41 H 0.093 0.907 42 H 0.349 0.651 43 H 0.078 0.922 44 H 0.114 0.886 45 H 0.390 0.610 46 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.395 33.075 13.470 35.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.042 4.042 3 C -0.321 4.321 4 C -0.145 4.145 5 N -0.157 5.157 6 N -0.151 5.151 7 C -0.015 4.015 8 C 0.281 3.719 9 O -0.453 6.453 10 N -0.359 5.359 11 C -0.027 4.027 12 C 0.053 3.947 13 H 0.126 0.874 14 O -0.371 6.371 15 C -0.099 4.099 16 N -0.317 5.317 17 C -0.071 4.071 18 C 0.235 3.765 19 O -0.499 6.499 20 N -0.232 5.232 21 C -0.460 4.460 22 H 0.073 0.927 23 C -0.213 4.213 24 N -0.575 5.575 25 Si 0.785 3.215 26 H -0.182 1.182 27 H -0.200 1.200 28 H -0.154 1.154 29 H 0.122 0.878 30 H 0.088 0.912 31 H 0.114 0.886 32 H 0.184 0.816 33 H 0.221 0.779 34 H 0.160 0.840 35 H 0.179 0.821 36 H 0.258 0.742 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.236 0.764 40 H 0.072 0.928 41 H 0.111 0.889 42 H 0.169 0.831 43 H 0.096 0.904 44 H 0.132 0.868 45 H 0.226 0.774 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.935 31.222 13.969 34.716 hybrid contribution -1.281 0.743 -1.551 2.144 sum 4.654 31.966 12.418 34.608 Atomic orbital electron populations 1.20583 0.84973 1.04606 1.04737 1.21726 0.96255 0.87032 0.99170 1.21599 0.92161 1.00085 1.18216 1.24335 0.99590 0.91953 0.98596 1.77295 0.97782 1.14464 1.26181 1.48159 1.03772 1.05515 1.57651 1.21741 1.05896 0.79656 0.94207 1.21252 0.76446 0.82168 0.91999 1.90767 1.51134 1.55753 1.47670 1.45702 1.67784 1.12745 1.09644 1.21954 1.02393 0.95069 0.83280 1.21999 0.85487 0.93125 0.94059 0.87439 1.86644 1.18715 1.74229 1.57552 1.22633 1.02559 0.87675 0.96993 1.59948 1.36989 1.18814 1.15963 1.21643 1.03301 0.90247 0.91876 1.21030 0.82140 0.89979 0.83391 1.90550 1.55137 1.72564 1.31640 1.42032 1.61639 1.11455 1.08123 1.19020 1.43739 0.87864 0.95392 0.92712 1.26118 0.96305 0.95977 1.02885 1.69806 1.46901 1.10584 1.30176 0.85357 0.79413 0.80104 0.76582 1.18248 1.20046 1.15356 0.87812 0.91193 0.88572 0.81640 0.77920 0.84041 0.82116 0.74233 0.90701 0.90939 0.76366 0.92798 0.88895 0.83121 0.90435 0.86785 0.77445 0.91139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.68 9.90 71.24 0.71 0.02 16 2 C 0.09 1.33 6.93 41.41 0.29 1.61 16 3 C -0.29 -4.67 10.72 21.99 0.24 -4.43 16 4 C 0.04 0.75 12.03 85.24 1.02 1.78 16 5 N -0.34 -7.73 12.58 -57.03 -0.72 -8.44 16 6 N -0.37 -6.68 3.10 -338.40 -1.05 -7.73 16 7 C 0.11 1.17 6.54 85.63 0.56 1.73 16 8 C 0.50 7.97 7.90 87.66 0.69 8.66 16 9 O -0.57 -15.31 16.43 -3.02 -0.05 -15.36 16 10 N -0.71 -7.79 5.50 -463.05 -2.55 -10.33 16 11 C 0.10 1.22 5.31 86.38 0.46 1.68 16 12 C 0.11 1.55 3.27 30.60 0.10 1.65 16 13 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 14 O -0.56 -8.20 12.62 -148.98 -1.88 -10.08 16 15 C 0.03 0.50 5.39 86.30 0.47 0.97 16 16 N -0.68 -18.24 6.13 -517.93 -3.17 -21.41 16 17 C 0.06 1.76 6.17 85.56 0.53 2.29 16 18 C 0.45 19.79 7.82 87.66 0.69 20.47 16 19 O -0.61 -33.87 15.78 -3.04 -0.05 -33.92 16 20 N -0.59 -27.47 5.09 -306.99 -1.56 -29.03 16 21 C -0.33 -19.32 10.16 84.04 0.85 -18.47 16 22 H 0.05 3.82 7.39 -2.91 -0.02 3.80 16 23 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 24 N -0.93 -56.13 13.96 21.66 0.30 -55.83 16 25 Si 0.97 38.32 27.74 68.60 1.90 40.22 16 26 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 27 H -0.28 -10.87 7.11 99.48 0.71 -10.16 16 28 H -0.23 -7.60 6.52 99.48 0.65 -6.95 16 29 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.07 0.51 7.72 -2.39 -0.02 0.49 16 31 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 33 H 0.20 2.38 8.06 -2.91 -0.02 2.35 16 34 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.16 0.38 7.66 -2.38 -0.02 0.37 16 36 H 0.42 2.70 8.47 -92.71 -0.79 1.91 16 37 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.39 3.24 9.05 -74.06 -0.67 2.57 16 40 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.35 10.33 7.82 -89.69 -0.70 9.63 16 43 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 45 H 0.39 14.86 5.76 -92.71 -0.53 14.33 16 46 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -93.19 397.00 -3.46 -96.65 By element: Atomic # 1 Polarization: 39.31 SS G_CDS: -1.70 Total: 37.61 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: 7.06 Total: 17.65 kcal Atomic # 7 Polarization: -124.04 SS G_CDS: -8.75 Total: -132.78 kcal Atomic # 8 Polarization: -57.38 SS G_CDS: -1.98 Total: -59.36 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 1.90 Total: 40.22 kcal Total: -93.19 -3.46 -96.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715602398.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.601 kcal (2) G-P(sol) polarization free energy of solvation -93.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds