Wall clock time and date at job start Tue Mar 31 2020 22:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46509 * 110.64095 * 2 1 4 4 C 1.34772 * 119.99840 * 300.69280 * 3 2 1 5 5 O 1.21278 * 120.00160 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00192 * 180.02562 * 4 3 2 7 7 C 1.50701 * 109.47748 * 180.02562 * 6 4 3 8 8 C 1.39373 * 119.48897 * 89.99919 * 7 6 4 9 9 C 1.36172 * 121.08524 * 180.02562 * 8 7 6 10 10 C 1.40372 * 119.51382 * 0.02562 * 9 8 7 11 11 C 1.40428 * 122.08285 * 179.97438 * 10 9 8 12 12 N 1.31244 * 119.88275 * 180.02562 * 11 10 9 13 13 C 1.32609 * 122.78186 * 359.97438 * 12 11 10 14 14 C 1.36178 * 121.86925 * 359.97438 * 13 12 11 15 15 C 1.40682 * 118.66852 * 0.02562 * 14 13 12 16 16 C 1.36210 * 119.48750 * 270.02762 * 7 6 4 17 17 C 1.55160 * 110.71818 * 123.13856 * 2 1 3 18 18 C 1.55395 * 101.36310 * 153.94903 * 17 2 1 19 19 N 1.47427 * 104.87380 * 323.01648 * 18 17 2 20 20 C 1.36930 * 125.64819 * 204.09919 * 19 18 17 21 21 H 1.08001 * 120.00160 * 180.02562 * 20 19 18 22 22 C 1.38811 * 120.00028 * 0.04586 * 20 19 18 23 23 N 1.31618 * 120.00192 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00106 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46939 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47389 * 119.99782 * 24 22 20 27 27 H 1.48506 * 109.46975 * 239.99375 * 24 22 20 28 28 C 1.47027 * 108.70243 * 24.13186 * 19 18 17 29 29 H 1.09001 * 109.46905 * 59.30088 * 1 2 3 30 30 H 1.08998 * 109.47470 * 179.29899 * 1 2 3 31 31 H 1.08998 * 109.47164 * 299.30872 * 1 2 3 32 32 H 0.96998 * 119.99699 * 120.70137 * 3 2 1 33 33 H 1.09003 * 109.47012 * 60.00439 * 6 4 3 34 34 H 1.09001 * 109.47016 * 300.01125 * 6 4 3 35 35 H 1.08002 * 119.45894 * 0.02562 * 8 7 6 36 36 H 1.07994 * 120.24276 * 180.02562 * 9 8 7 37 37 H 1.08000 * 120.06024 * 0.04774 * 11 10 9 38 38 H 1.07994 * 119.06575 * 180.02562 * 13 12 11 39 39 H 1.08004 * 120.66259 * 179.97438 * 14 13 12 40 40 H 1.07994 * 120.26320 * 359.96878 * 16 7 6 41 41 H 1.08998 * 111.00271 * 272.11956 * 17 2 1 42 42 H 1.08991 * 111.00350 * 35.97064 * 17 2 1 43 43 H 1.09003 * 110.33845 * 204.17083 * 18 17 2 44 44 H 1.08994 * 110.35207 * 81.87312 * 18 17 2 45 45 H 0.97006 * 120.00212 * 179.97438 * 23 22 20 46 46 H 1.08993 * 109.88215 * 239.52336 * 28 19 18 47 47 H 1.09005 * 109.87639 * 118.36043 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3710 0.0000 4 6 1.7264 2.2116 -1.0037 5 8 1.0106 1.8333 -1.9066 6 6 2.2581 3.6217 -1.0041 7 6 1.7559 4.3477 -2.2254 8 6 0.5516 5.0463 -2.1615 9 6 0.0672 5.7132 -3.2455 10 6 0.7916 5.6971 -4.4478 11 6 0.3423 6.3654 -5.5982 12 7 1.0542 6.3213 -6.7000 13 6 2.2027 5.6641 -6.7869 14 6 2.7246 4.9854 -5.7280 15 6 2.0183 4.9863 -4.5113 16 6 2.4858 4.3106 -3.3749 17 6 2.0789 -0.7934 1.2152 18 6 3.4674 -1.2454 0.6838 19 7 3.2471 -1.5461 -0.7426 20 6 4.0077 -2.3900 -1.5070 21 1 3.7633 -2.5439 -2.5477 22 6 5.0926 -3.0482 -0.9442 23 7 5.3905 -2.8607 0.3240 24 14 6.1306 -4.1989 -1.9872 25 1 5.5910 -4.2357 -3.3701 26 1 7.5332 -3.7118 -2.0155 27 1 6.0927 -5.5645 -1.4048 28 6 2.0760 -0.7892 -1.2085 29 1 -0.3633 0.5247 -0.8837 30 1 -0.3634 -1.0275 -0.0126 31 1 -0.3633 0.5030 0.8961 32 1 2.6187 1.6737 0.7223 33 1 3.3478 3.5991 -1.0169 34 1 1.9160 4.1392 -0.1078 35 1 -0.0067 5.0589 -1.2371 36 1 -0.8673 6.2504 -3.1807 37 1 -0.5871 6.9150 -5.5764 38 1 2.7397 5.6680 -7.7238 39 1 3.6616 4.4562 -5.8207 40 1 3.4174 3.7655 -3.4107 41 1 2.1819 -0.1489 2.0882 42 1 1.4469 -1.6528 1.4384 43 1 3.8030 -2.1378 1.2121 44 1 4.1955 -0.4419 0.7941 45 1 6.1484 -3.3209 0.7174 46 1 1.3140 -1.4754 -1.5780 47 1 2.3712 -0.0992 -1.9991 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716844511.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:02 Heat of formation + Delta-G solvation = 44.831351 kcal Electronic energy + Delta-G solvation = -28883.417863 eV Core-core repulsion = 25031.594125 eV Total energy + Delta-G solvation = -3851.823738 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.00863 -39.93897 -37.99308 -36.98588 -34.01492 -33.26486 -32.79278 -31.81380 -30.15945 -29.84578 -28.69963 -27.91250 -25.69326 -24.17057 -23.76574 -23.08415 -22.38897 -20.76537 -20.28940 -19.01894 -17.96604 -17.37309 -17.08786 -16.69932 -16.61685 -15.60387 -15.14290 -15.02867 -14.73640 -14.47444 -14.38304 -13.97825 -13.77693 -13.68895 -13.54905 -13.18314 -12.86419 -12.78220 -12.41586 -12.19115 -12.07848 -11.91641 -11.75607 -11.69899 -11.58178 -11.19536 -10.95189 -10.88956 -10.42885 -10.37152 -10.34925 -10.07424 -9.96027 -9.69117 -9.66140 -9.37210 -8.99145 -8.68327 -8.63746 -8.20252 -6.83140 -5.67360 -3.07612 0.22296 0.74163 1.79325 2.82181 2.88203 3.38464 3.44719 3.47061 3.49258 3.96242 4.22989 4.35628 4.41453 4.48165 4.65202 4.69315 4.84583 4.92283 5.02708 5.12504 5.20578 5.24359 5.35980 5.38133 5.45160 5.48131 5.54832 5.55613 5.66469 5.71728 5.89845 5.90923 6.01763 6.14423 6.18804 6.20966 6.33189 6.36270 6.43444 6.48464 6.49759 6.67545 6.68657 6.81368 7.12547 7.42283 7.62154 7.77779 7.80518 7.84794 8.33209 8.51047 9.21452 9.82063 10.46814 11.37018 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013099 B = 0.002798 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.121762 B =10005.500898 C =11508.083387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.160 3.840 3 N -0.709 5.709 4 C 0.516 3.484 5 O -0.529 6.529 6 C -0.110 4.110 7 C -0.036 4.036 8 C -0.099 4.099 9 C -0.091 4.091 10 C -0.113 4.113 11 C 0.143 3.857 12 N -0.493 5.493 13 C 0.070 3.930 14 C -0.150 4.150 15 C -0.020 4.020 16 C -0.097 4.097 17 C -0.147 4.147 18 C 0.154 3.846 19 N -0.604 5.604 20 C -0.217 4.217 21 H 0.077 0.923 22 C -0.013 4.013 23 N -0.925 5.925 24 Si 0.913 3.087 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.290 1.290 28 C 0.138 3.862 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.397 0.603 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.125 0.875 36 H 0.133 0.867 37 H 0.161 0.839 38 H 0.151 0.849 39 H 0.138 0.862 40 H 0.131 0.869 41 H 0.063 0.937 42 H 0.076 0.924 43 H 0.108 0.892 44 H 0.010 0.990 45 H 0.251 0.749 46 H 0.029 0.971 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.826 19.095 -1.202 21.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.074 3.926 3 N -0.360 5.360 4 C 0.301 3.699 5 O -0.406 6.406 6 C -0.150 4.150 7 C -0.037 4.037 8 C -0.117 4.117 9 C -0.110 4.110 10 C -0.115 4.115 11 C -0.029 4.029 12 N -0.201 5.201 13 C -0.073 4.073 14 C -0.170 4.170 15 C -0.025 4.025 16 C -0.115 4.115 17 C -0.186 4.186 18 C 0.029 3.971 19 N -0.330 5.330 20 C -0.345 4.345 21 H 0.095 0.905 22 C -0.208 4.208 23 N -0.574 5.574 24 Si 0.744 3.256 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.217 1.217 28 C 0.011 3.989 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.231 0.769 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.143 0.857 36 H 0.150 0.850 37 H 0.178 0.822 38 H 0.169 0.831 39 H 0.156 0.844 40 H 0.149 0.851 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.125 0.875 44 H 0.028 0.972 45 H 0.061 0.939 46 H 0.047 0.953 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -9.328 19.050 -2.693 21.381 hybrid contribution 1.298 -0.969 0.627 1.737 sum -8.030 18.080 -2.066 19.891 Atomic orbital electron populations 1.22045 0.94333 1.02243 1.02240 1.21335 0.92935 0.80427 0.97888 1.45993 1.51908 1.12448 1.25613 1.20246 0.81003 0.86573 0.82085 1.90699 1.37057 1.77387 1.35430 1.20807 1.03037 0.93554 0.97643 1.19131 0.94429 0.95679 0.94493 1.20765 0.95203 0.96654 0.99124 1.20886 0.99262 0.99242 0.91651 1.19021 0.95878 1.00406 0.96185 1.23161 0.98064 0.94570 0.87078 1.67398 1.06829 1.18157 1.27693 1.22136 0.92296 0.94206 0.98681 1.21955 1.01201 1.00757 0.93081 1.18132 0.93884 0.96150 0.94372 1.20836 1.00627 0.98601 0.91451 1.23441 1.01296 0.98851 0.95060 1.22012 0.89273 1.00593 0.85265 1.44511 1.30518 1.50544 1.07463 1.19140 1.05857 1.16551 0.92952 0.90532 1.24759 0.98797 1.00782 0.96475 1.69784 1.30036 1.46587 1.10993 0.86004 0.80004 0.80386 0.79192 1.20534 1.21802 1.21738 1.21588 0.90208 0.93122 0.93942 0.90841 0.91867 0.93243 0.76863 0.87688 0.87880 0.85658 0.84952 0.82171 0.83132 0.84422 0.85075 0.91881 0.90588 0.87481 0.97188 0.93856 0.95328 0.95042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 8.41 37.16 0.31 -2.01 16 2 C 0.16 2.77 0.80 -129.98 -0.10 2.66 16 3 N -0.71 -10.35 5.15 -45.91 -0.24 -10.59 16 4 C 0.52 7.52 7.04 -10.99 -0.08 7.45 16 5 O -0.53 -9.69 12.98 5.56 0.07 -9.62 16 6 C -0.11 -1.14 5.80 -29.04 -0.17 -1.31 16 7 C -0.04 -0.41 4.34 -104.93 -0.46 -0.86 16 8 C -0.10 -1.02 9.58 -39.90 -0.38 -1.40 16 9 C -0.09 -0.88 9.81 -39.52 -0.39 -1.27 16 10 C -0.11 -1.28 5.74 -106.86 -0.61 -1.90 16 11 C 0.14 1.50 11.05 -16.98 -0.19 1.31 16 12 N -0.49 -5.90 10.30 -13.16 -0.14 -6.04 16 13 C 0.07 0.76 11.07 -17.96 -0.20 0.56 16 14 C -0.15 -1.67 9.88 -39.40 -0.39 -2.06 16 15 C -0.02 -0.25 5.75 -106.81 -0.61 -0.86 16 16 C -0.10 -1.19 9.42 -39.56 -0.37 -1.56 16 17 C -0.15 -2.60 6.11 -24.32 -0.15 -2.74 16 18 C 0.15 3.56 5.88 -2.26 -0.01 3.55 16 19 N -0.60 -15.48 3.40 -169.77 -0.58 -16.06 16 20 C -0.22 -6.11 10.27 -15.06 -0.15 -6.26 16 21 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 22 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 23 N -0.92 -26.55 10.09 55.49 0.56 -25.99 16 24 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 28 C 0.14 3.05 6.16 -3.06 -0.02 3.03 16 29 H 0.07 1.23 6.20 -51.93 -0.32 0.91 16 30 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.40 4.83 8.48 -40.82 -0.35 4.48 16 33 H 0.10 0.96 8.07 -51.93 -0.42 0.54 16 34 H 0.10 0.75 8.08 -51.93 -0.42 0.33 16 35 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.15 1.26 8.06 -52.49 -0.42 0.83 16 39 H 0.14 1.26 8.06 -52.48 -0.42 0.84 16 40 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 41 H 0.06 0.92 8.06 -51.93 -0.42 0.50 16 42 H 0.08 1.33 8.05 -51.93 -0.42 0.92 16 43 H 0.11 2.83 5.87 -51.93 -0.31 2.52 16 44 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 45 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 46 H 0.03 0.65 7.80 -51.93 -0.41 0.25 16 47 H 0.03 0.76 6.68 -51.93 -0.35 0.41 16 LS Contribution 381.55 15.07 5.75 5.75 Total: -1.00 -34.37 381.55 -10.41 -44.78 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -6.75 Total: 4.75 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -4.07 Total: -4.14 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: -0.39 Total: -58.67 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.07 Total: -9.62 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.37 -10.41 -44.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716844511.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.616 kcal (2) G-P(sol) polarization free energy of solvation -34.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds