Wall clock time and date at job start Tue Mar 31 2020 22:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 110.91697 * 2 1 4 4 C 1.34773 * 119.99841 * 56.09677 * 3 2 1 5 5 O 1.21277 * 120.00104 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99863 * 179.97438 * 4 3 2 7 7 C 1.50693 * 109.47029 * 180.02562 * 6 4 3 8 8 C 1.39379 * 119.49201 * 90.00079 * 7 6 4 9 9 C 1.36167 * 121.08763 * 179.97438 * 8 7 6 10 10 C 1.40376 * 119.51508 * 0.02562 * 9 8 7 11 11 C 1.40432 * 122.07215 * 180.02562 * 10 9 8 12 12 N 1.31250 * 119.87843 * 179.97438 * 11 10 9 13 13 C 1.32600 * 122.77587 * 359.97438 * 12 11 10 14 14 C 1.36179 * 121.87907 * 0.02562 * 13 12 11 15 15 C 1.40694 * 118.66975 * 0.02562 * 14 13 12 16 16 C 1.36218 * 119.49301 * 269.72689 * 7 6 4 17 17 C 1.55157 * 111.00143 * 236.09886 * 2 1 3 18 18 C 1.54325 * 102.94184 * 206.42607 * 17 2 1 19 19 N 1.47022 * 107.26948 * 22.19107 * 18 17 2 20 20 C 1.36945 * 125.64832 * 181.02381 * 19 18 17 21 21 H 1.07997 * 119.99756 * 180.02562 * 20 19 18 22 22 C 1.38805 * 119.99878 * 0.02562 * 20 19 18 23 23 N 1.31624 * 120.00257 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47174 * 270.00277 * 24 22 20 26 26 H 1.48501 * 109.47062 * 30.00228 * 24 22 20 27 27 H 1.48499 * 109.46981 * 150.00382 * 24 22 20 28 28 C 1.47423 * 108.70390 * 1.29074 * 19 18 17 29 29 H 1.08996 * 109.47690 * 183.89832 * 1 2 3 30 30 H 1.08999 * 109.46882 * 303.90238 * 1 2 3 31 31 H 1.09005 * 109.47260 * 63.90076 * 1 2 3 32 32 H 0.97003 * 119.99983 * 236.09806 * 3 2 1 33 33 H 1.08994 * 109.47196 * 300.00527 * 6 4 3 34 34 H 1.09002 * 109.46928 * 60.00592 * 6 4 3 35 35 H 1.08001 * 119.45313 * 359.96156 * 8 7 6 36 36 H 1.07999 * 120.24180 * 179.97438 * 9 8 7 37 37 H 1.08003 * 120.06521 * 359.95217 * 11 10 9 38 38 H 1.07996 * 119.06321 * 179.97438 * 13 12 11 39 39 H 1.08002 * 120.66775 * 180.02562 * 14 13 12 40 40 H 1.08002 * 120.25848 * 0.02644 * 16 7 6 41 41 H 1.09000 * 110.72140 * 88.06437 * 17 2 1 42 42 H 1.08998 * 110.72520 * 324.78756 * 17 2 1 43 43 H 1.09002 * 109.88274 * 262.77538 * 18 17 2 44 44 H 1.09000 * 110.01178 * 141.68100 * 18 17 2 45 45 H 0.97001 * 119.99885 * 179.97438 * 23 22 20 46 46 H 1.09000 * 110.37068 * 94.48354 * 28 19 18 47 47 H 1.09005 * 110.36651 * 216.80519 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0530 1.3685 0.0000 4 6 1.6855 2.2303 0.9687 5 8 0.9221 1.8729 1.8407 6 6 2.2239 3.6379 0.9691 7 6 1.6634 4.3898 2.1486 8 6 2.3487 4.3723 3.3621 9 6 1.8721 5.0407 4.4485 10 6 0.6705 5.7592 4.3460 11 6 0.1305 6.4677 5.4316 12 7 -0.9960 7.1256 5.2876 13 6 -1.6672 7.1583 4.1445 14 6 -1.2279 6.5044 3.0337 15 6 -0.0270 5.7755 3.1102 16 6 0.4976 5.0809 2.0108 17 6 2.0861 -0.8079 -1.2023 18 6 3.4674 -1.2742 -0.6961 19 7 3.4270 -1.2431 0.7733 20 6 4.4640 -1.5668 1.6072 21 1 4.3332 -1.5120 2.6778 22 6 5.6830 -1.9654 1.0763 23 7 5.8425 -2.0318 -0.2285 24 14 7.0977 -2.4063 2.2138 25 1 7.9011 -1.1904 2.4988 26 1 6.5588 -2.9527 3.4852 27 1 7.9577 -3.4262 1.5617 28 6 2.0835 -0.8120 1.2003 29 1 -0.3634 -1.0252 0.0699 30 1 -0.3633 0.5732 0.8529 31 1 -0.3634 0.4521 -0.9229 32 1 2.6639 1.6542 -0.6973 33 1 3.3113 3.6109 1.0392 34 1 1.9317 4.1389 0.0462 35 1 3.2729 3.8192 3.4421 36 1 2.4141 5.0174 5.3823 37 1 0.6409 6.4709 6.3834 38 1 -2.5890 7.7187 4.0932 39 1 -1.7901 6.5446 2.1124 40 1 -0.0212 5.0895 1.0636 41 1 2.1922 -0.1699 -2.0797 42 1 1.4467 -1.6632 -1.4210 43 1 4.2426 -0.5999 -1.0600 44 1 3.6676 -2.2890 -1.0400 45 1 6.6945 -2.3100 -0.5994 46 1 1.4523 -1.6782 1.3988 47 1 2.1515 -0.1802 2.0860 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716844512.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:05 Heat of formation + Delta-G solvation = 22.537063 kcal Electronic energy + Delta-G solvation = -28969.652819 eV Core-core repulsion = 25116.862328 eV Total energy + Delta-G solvation = -3852.790491 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.82994 -41.11930 -39.18186 -38.14818 -35.61645 -34.11071 -33.80084 -33.31918 -31.70347 -30.70146 -30.35054 -28.80015 -27.50813 -25.47047 -24.90568 -24.07483 -23.19580 -22.28193 -21.64598 -20.40592 -19.00799 -18.72244 -18.10589 -17.83948 -17.53107 -17.03268 -16.64381 -16.15518 -15.86541 -15.61476 -15.54705 -15.22172 -15.02484 -14.77767 -14.66281 -14.37146 -14.18833 -13.87519 -13.60289 -13.54068 -13.42125 -13.17456 -12.93344 -12.86618 -12.74195 -12.68637 -12.65788 -12.11111 -12.03152 -11.95609 -11.94709 -11.68885 -11.54357 -11.14890 -10.71539 -10.59079 -10.46284 -9.92971 -9.86558 -8.99120 -8.86409 -7.86033 -5.19725 -0.56797 -0.08470 0.99055 1.44127 1.45115 1.54041 1.76869 1.98920 2.45165 2.48032 3.13910 3.32325 3.50259 3.57525 3.60092 3.65532 3.71477 3.88950 3.93942 4.04539 4.07558 4.11540 4.21031 4.25555 4.39335 4.51084 4.62045 4.64547 4.70878 4.71800 4.79868 4.82866 4.87220 4.90651 4.93359 5.03156 5.10032 5.13810 5.14218 5.37921 5.40217 5.42915 5.55241 5.65897 5.71638 5.73098 5.80683 5.90172 6.20040 6.72904 7.01641 7.11712 7.41048 7.77395 8.41678 9.23671 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015129 B = 0.002759 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.287247 B =10146.535432 C =11374.156449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.170 3.830 3 N -0.700 5.700 4 C 0.515 3.485 5 O -0.570 6.570 6 C -0.102 4.102 7 C -0.044 4.044 8 C -0.120 4.120 9 C -0.089 4.089 10 C -0.131 4.131 11 C 0.140 3.860 12 N -0.516 5.516 13 C 0.059 3.941 14 C -0.155 4.155 15 C -0.042 4.042 16 C -0.108 4.108 17 C -0.129 4.129 18 C 0.185 3.815 19 N -0.620 5.620 20 C -0.240 4.240 21 H 0.068 0.932 22 C -0.058 4.058 23 N -0.945 5.945 24 Si 0.972 3.028 25 H -0.284 1.284 26 H -0.276 1.276 27 H -0.292 1.292 28 C 0.131 3.869 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.409 0.591 33 H 0.116 0.884 34 H 0.137 0.863 35 H 0.128 0.872 36 H 0.155 0.845 37 H 0.185 0.815 38 H 0.174 0.826 39 H 0.161 0.839 40 H 0.148 0.852 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.021 0.979 44 H 0.006 0.994 45 H 0.248 0.752 46 H 0.019 0.981 47 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.810 18.175 -0.117 21.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.082 3.918 3 N -0.351 5.351 4 C 0.302 3.698 5 O -0.449 6.449 6 C -0.141 4.141 7 C -0.046 4.046 8 C -0.138 4.138 9 C -0.109 4.109 10 C -0.133 4.133 11 C -0.031 4.031 12 N -0.224 5.224 13 C -0.083 4.083 14 C -0.175 4.175 15 C -0.047 4.047 16 C -0.126 4.126 17 C -0.167 4.167 18 C 0.060 3.940 19 N -0.346 5.346 20 C -0.370 4.370 21 H 0.086 0.914 22 C -0.252 4.252 23 N -0.594 5.594 24 Si 0.801 3.199 25 H -0.210 1.210 26 H -0.202 1.202 27 H -0.218 1.218 28 C 0.004 3.996 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.245 0.755 33 H 0.134 0.866 34 H 0.155 0.845 35 H 0.145 0.855 36 H 0.173 0.827 37 H 0.202 0.798 38 H 0.192 0.808 39 H 0.179 0.821 40 H 0.165 0.835 41 H 0.117 0.883 42 H 0.105 0.895 43 H 0.039 0.961 44 H 0.024 0.976 45 H 0.057 0.943 46 H 0.037 0.963 47 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -12.619 18.345 1.100 22.293 hybrid contribution 1.804 -1.194 -0.335 2.189 sum -10.815 17.152 0.764 20.291 Atomic orbital electron populations 1.21944 0.92231 1.02806 1.03120 1.21294 0.93898 0.81350 0.95222 1.45786 1.48830 1.10949 1.29527 1.20869 0.80534 0.87741 0.80609 1.90657 1.37300 1.79342 1.37613 1.20812 1.03147 0.90808 0.99350 1.19318 0.95015 0.95468 0.94752 1.21049 1.00829 0.98955 0.92948 1.21195 0.94431 0.95514 0.99731 1.19279 0.97457 1.01227 0.95313 1.23588 0.91072 0.90165 0.98269 1.67453 1.08449 1.19315 1.27212 1.22579 0.99911 0.97920 0.87907 1.22176 0.95895 0.97838 1.01551 1.18460 0.95397 0.97017 0.93792 1.20972 0.95416 0.97402 0.98771 1.23096 0.96775 0.99992 0.96882 1.20950 0.92972 0.97411 0.82655 1.44689 1.08312 1.78972 1.02637 1.19298 0.90610 1.37786 0.89264 0.91418 1.25503 0.99936 1.02264 0.97466 1.70143 1.24261 1.54582 1.10434 0.85171 0.79288 0.77458 0.77976 1.21031 1.20166 1.21802 1.22006 0.86256 0.94905 0.96385 0.91439 0.91936 0.90524 0.75462 0.86624 0.84491 0.85450 0.82702 0.79777 0.80845 0.82138 0.83472 0.88264 0.89498 0.96079 0.97594 0.94307 0.96328 0.95571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.99 8.59 71.98 0.62 -3.38 16 2 C 0.17 5.56 0.82 5.07 0.00 5.57 16 3 N -0.70 -20.01 5.19 -416.31 -2.16 -22.17 16 4 C 0.51 14.84 7.21 87.66 0.63 15.47 16 5 O -0.57 -20.78 12.87 -3.02 -0.04 -20.82 16 6 C -0.10 -2.05 5.80 29.10 0.17 -1.88 16 7 C -0.04 -1.00 4.34 -20.06 -0.09 -1.09 16 8 C -0.12 -2.82 9.58 22.06 0.21 -2.61 16 9 C -0.09 -1.90 9.81 22.31 0.22 -1.68 16 10 C -0.13 -2.96 5.74 -21.31 -0.12 -3.08 16 11 C 0.14 2.88 11.05 85.31 0.94 3.82 16 12 N -0.52 -11.61 10.30 -195.53 -2.01 -13.62 16 13 C 0.06 1.13 11.07 84.10 0.93 2.06 16 14 C -0.16 -2.88 9.88 22.39 0.22 -2.66 16 15 C -0.04 -0.94 5.75 -21.28 -0.12 -1.06 16 16 C -0.11 -2.30 9.42 22.28 0.21 -2.09 16 17 C -0.13 -4.19 5.97 31.78 0.19 -4.00 16 18 C 0.18 8.59 5.37 86.73 0.47 9.05 16 19 N -0.62 -31.71 3.39 -691.55 -2.35 -34.06 16 20 C -0.24 -13.67 10.28 84.03 0.86 -12.81 16 21 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 22 C -0.06 -3.29 5.49 84.86 0.47 -2.83 16 23 N -0.95 -55.27 10.31 21.65 0.22 -55.04 16 24 Si 0.97 45.75 29.55 68.60 2.03 47.77 16 25 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 26 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 27 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 28 C 0.13 5.70 6.18 86.93 0.54 6.24 16 29 H 0.07 1.80 8.07 -2.39 -0.02 1.78 16 30 H 0.06 2.00 5.92 -2.39 -0.01 1.99 16 31 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 32 H 0.41 9.92 8.51 -92.71 -0.79 9.13 16 33 H 0.12 2.14 8.08 -2.39 -0.02 2.12 16 34 H 0.14 1.76 8.07 -2.39 -0.02 1.74 16 35 H 0.13 2.91 8.06 -2.91 -0.02 2.88 16 36 H 0.16 2.41 8.06 -2.91 -0.02 2.38 16 37 H 0.19 2.61 8.06 -2.91 -0.02 2.59 16 38 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 39 H 0.16 2.01 8.06 -2.91 -0.02 1.98 16 40 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 41 H 0.10 2.57 8.09 -2.39 -0.02 2.55 16 42 H 0.09 2.61 8.04 -2.39 -0.02 2.59 16 43 H 0.02 1.07 7.38 -2.39 -0.02 1.05 16 44 H 0.01 0.31 7.50 -2.39 -0.02 0.29 16 45 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 46 H 0.02 0.84 7.99 -2.39 -0.02 0.82 16 47 H 0.03 1.25 6.89 -2.38 -0.02 1.23 16 Total: -1.00 -75.71 382.41 2.24 -73.48 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: 0.20 Total: 21.42 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: 6.35 Total: 3.04 kcal Atomic # 7 Polarization: -118.60 SS G_CDS: -6.30 Total: -124.89 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.04 Total: -20.82 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Total: -75.71 2.24 -73.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716844512.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.016 kcal (2) G-P(sol) polarization free energy of solvation -75.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds