Wall clock time and date at job start Tue Mar 31 2020 22:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36346 * 119.95968 * 2 1 4 4 C 1.38873 * 121.05464 * 179.69613 * 3 2 1 5 5 C 1.38738 * 120.72795 * 0.62756 * 4 3 2 6 6 C 1.47437 * 120.33574 * 179.67307 * 5 4 3 7 7 O 1.21596 * 120.00090 * 179.72243 * 6 5 4 8 8 N 1.34780 * 119.99471 * 359.73045 * 6 5 4 9 9 C 1.46497 * 119.99653 * 179.97438 * 8 6 5 10 10 C 1.53786 * 113.61643 * 105.85894 * 9 8 6 11 11 C 1.53962 * 87.01719 * 89.22773 * 10 9 8 12 12 C 1.52994 * 113.66220 * 139.93548 * 11 10 9 13 13 N 1.46498 * 109.47402 * 87.44478 * 12 11 10 14 14 C 1.36937 * 120.00198 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00227 * 359.97438 * 14 13 12 16 16 C 1.38812 * 119.99949 * 179.97438 * 14 13 12 17 17 N 1.31622 * 119.99752 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00247 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47535 * 89.99455 * 18 16 14 20 20 H 1.48501 * 109.47316 * 209.99801 * 18 16 14 21 21 H 1.48501 * 109.47022 * 329.99657 * 18 16 14 22 22 C 1.53781 * 113.61305 * 203.46742 * 9 8 6 23 23 C 1.41779 * 119.33461 * 359.40443 * 5 4 3 24 24 N 1.33355 * 121.05915 * 180.25336 * 23 5 4 25 25 C 1.31234 * 121.34910 * 179.97438 * 24 23 5 26 26 C 1.39226 * 121.69961 * 0.04264 * 25 24 23 27 27 C 1.36631 * 119.91192 * 359.97438 * 26 25 24 28 28 C 1.40435 * 119.95775 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47634 * 269.98359 * 1 2 3 30 30 H 1.09003 * 109.46987 * 29.98235 * 1 2 3 31 31 H 1.09001 * 109.47506 * 149.98036 * 1 2 3 32 32 H 1.08000 * 119.47116 * 0.04317 * 3 2 1 33 33 H 1.08004 * 119.63340 * 180.32420 * 4 3 2 34 34 H 0.96995 * 120.00200 * 359.97438 * 8 6 5 35 35 H 1.09002 * 112.84935 * 334.66222 * 9 8 6 36 36 H 1.08993 * 113.61491 * 203.74894 * 10 9 8 37 37 H 1.09000 * 113.61138 * 334.65232 * 10 9 8 38 38 H 1.09002 * 113.61454 * 270.79954 * 11 10 9 39 39 H 1.09005 * 109.46709 * 207.43538 * 12 11 10 40 40 H 1.08998 * 109.47556 * 327.43829 * 12 11 10 41 41 H 0.97001 * 120.00130 * 359.97438 * 13 12 11 42 42 H 0.97001 * 119.99757 * 180.02562 * 17 16 14 43 43 H 1.09001 * 113.61695 * 25.34675 * 22 9 8 44 44 H 1.08996 * 113.61580 * 156.16953 * 22 9 8 45 45 H 1.08005 * 119.14666 * 179.97438 * 25 24 23 46 46 H 1.08006 * 120.04235 * 179.97438 * 26 25 24 47 47 H 1.07992 * 120.92383 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1879 1.1813 0.0000 4 6 3.5764 1.2078 0.0063 5 6 4.3080 0.0290 -0.0003 6 6 5.7818 0.0674 -0.0007 7 8 6.4170 -0.9695 -0.0014 8 7 6.4251 1.2518 -0.0003 9 6 7.8895 1.2899 -0.0002 10 6 8.4955 1.6914 -1.3554 11 6 8.4064 3.1504 -0.8721 12 6 9.6190 4.0000 -1.2573 13 7 9.4094 4.5754 -2.5882 14 6 10.3681 5.3785 -3.1458 15 1 11.2788 5.5882 -2.6042 16 6 10.1697 5.9232 -4.4070 17 7 11.0910 6.6956 -4.9427 18 14 8.5944 5.5612 -5.3435 19 1 7.5742 6.5881 -5.0118 20 1 8.8685 5.5890 -6.8027 21 1 8.0882 4.2188 -4.9603 22 6 8.4717 2.5978 0.5615 23 6 3.6241 -1.2129 -0.0007 24 7 4.2929 -2.3666 -0.0019 25 6 3.6657 -3.5194 -0.0018 26 6 2.2756 -3.5959 -0.0014 27 6 1.5302 -2.4508 -0.0005 28 6 2.2083 -1.2167 -0.0005 29 1 -0.3634 -0.0003 1.0277 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3634 -0.8898 -0.5141 32 1 1.6386 2.1112 0.0007 33 1 4.0923 2.1566 0.0115 34 1 5.9184 2.0788 0.0000 35 1 8.3363 0.3932 0.4294 36 1 9.5174 1.3403 -1.4980 37 1 7.8489 1.4716 -2.2050 38 1 7.4585 3.6326 -1.1115 39 1 9.7460 4.8025 -0.5306 40 1 10.5119 3.3750 -1.2682 41 1 8.5914 4.3874 -3.0745 42 1 10.9522 7.0765 -5.8239 43 1 7.8060 3.1087 1.2571 44 1 9.4866 2.4947 0.9452 45 1 4.2429 -4.4323 -0.0032 46 1 1.7870 -4.5591 -0.0018 47 1 0.4510 -2.4911 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717388831.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:42 Heat of formation + Delta-G solvation = 60.773843 kcal Electronic energy + Delta-G solvation = -28055.675318 eV Core-core repulsion = 24204.542898 eV Total energy + Delta-G solvation = -3851.132420 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.43341 -40.02447 -38.25768 -37.56715 -34.66288 -34.47490 -33.13622 -31.53596 -31.08492 -30.90752 -28.16030 -26.95732 -25.54954 -24.70582 -24.05481 -23.38677 -22.44220 -21.31988 -20.42554 -19.25413 -18.60493 -17.94840 -17.50300 -17.39923 -16.09949 -15.84228 -15.30570 -15.08708 -14.77420 -14.61042 -14.48423 -14.35524 -14.13951 -14.06903 -13.73881 -13.59660 -13.33501 -13.29989 -12.68725 -12.60236 -12.43802 -12.32908 -12.26168 -11.84571 -11.72765 -11.65099 -11.37123 -10.87954 -10.76391 -10.59746 -10.19757 -10.15793 -10.13182 -9.85827 -9.55285 -9.39583 -9.21497 -8.99836 -8.83890 -8.53450 -7.18339 -5.73938 -3.08587 -0.24780 0.42481 1.37931 2.34450 2.99833 3.07259 3.39021 3.42231 3.46819 3.81834 3.91365 4.06785 4.22325 4.36001 4.38976 4.53139 4.61059 4.61713 4.64930 4.73362 4.83073 4.90095 5.02076 5.03559 5.06863 5.07941 5.23120 5.35896 5.48545 5.54631 5.56987 5.61655 5.70367 5.73704 5.74193 5.88183 5.90964 5.93973 6.00708 6.07497 6.17856 6.19523 6.32751 6.38176 6.62863 6.72704 6.87097 7.45621 7.70025 8.03247 8.24949 8.45597 9.25265 9.97875 10.18260 11.44712 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015094 B = 0.002323 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.641951 B =12048.910010 C =12854.058698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.038 4.038 3 C -0.130 4.130 4 C -0.056 4.056 5 C -0.114 4.114 6 C 0.555 3.445 7 O -0.498 6.498 8 N -0.711 5.711 9 C 0.119 3.881 10 C -0.141 4.141 11 C -0.119 4.119 12 C 0.167 3.833 13 N -0.756 5.756 14 C -0.242 4.242 15 H 0.090 0.910 16 C 0.002 3.998 17 N -0.936 5.936 18 Si 0.885 3.115 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.277 1.277 22 C -0.136 4.136 23 C 0.166 3.834 24 N -0.438 5.438 25 C 0.132 3.868 26 C -0.176 4.176 27 C -0.060 4.060 28 C -0.110 4.110 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.396 0.604 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.027 0.973 40 H 0.029 0.971 41 H 0.360 0.640 42 H 0.259 0.741 43 H 0.069 0.931 44 H 0.097 0.903 45 H 0.161 0.839 46 H 0.138 0.862 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.670 -18.505 15.044 35.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.039 4.039 3 C -0.148 4.148 4 C -0.077 4.077 5 C -0.118 4.118 6 C 0.341 3.659 7 O -0.372 6.372 8 N -0.364 5.364 9 C 0.014 3.986 10 C -0.180 4.180 11 C -0.137 4.137 12 C 0.040 3.960 13 N -0.401 5.401 14 C -0.372 4.372 15 H 0.107 0.893 16 C -0.194 4.194 17 N -0.584 5.584 18 Si 0.715 3.285 19 H -0.212 1.212 20 H -0.218 1.218 21 H -0.203 1.203 22 C -0.174 4.174 23 C 0.043 3.957 24 N -0.144 5.144 25 C -0.040 4.040 26 C -0.196 4.196 27 C -0.086 4.086 28 C -0.112 4.112 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.153 0.847 33 H 0.154 0.846 34 H 0.232 0.768 35 H 0.119 0.881 36 H 0.111 0.889 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.045 0.955 40 H 0.046 0.954 41 H 0.193 0.807 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.115 0.885 45 H 0.178 0.822 46 H 0.156 0.844 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -24.022 -19.012 15.018 34.118 hybrid contribution -2.259 0.304 -0.920 2.458 sum -26.281 -18.709 14.098 35.206 Atomic orbital electron populations 1.20938 0.90309 1.03615 1.03055 1.19904 0.96366 0.91947 0.95683 1.20726 0.93802 0.98162 1.02088 1.21461 0.94336 0.97359 0.94498 1.19885 0.93607 0.92033 1.06248 1.17887 0.86603 0.83934 0.77453 1.90848 1.67312 1.32147 1.46873 1.45630 1.06901 1.08035 1.75832 1.21900 0.79261 0.99351 0.98053 1.23483 1.01778 0.96018 0.96718 1.22844 1.00252 0.95488 0.95162 1.20619 0.93949 0.94096 0.87382 1.42708 1.21243 1.59542 1.16600 1.19086 0.98459 1.20216 0.99419 0.89262 1.24681 0.97714 0.99696 0.97280 1.69707 1.34121 1.37141 1.17425 0.86529 0.84322 0.77924 0.79686 1.21171 1.21770 1.20322 1.23290 1.01931 0.95277 0.96917 1.18587 0.88843 0.91984 0.96296 1.68353 1.38779 0.97220 1.10072 1.23217 0.91915 0.96454 0.92432 1.21980 0.95689 0.99626 1.02282 1.21499 1.00492 0.91238 0.95368 1.18677 0.93747 0.94392 1.04365 0.90253 0.90551 0.90952 0.84660 0.84634 0.76831 0.88142 0.88862 0.91516 0.89672 0.95525 0.95359 0.80749 0.93121 0.91187 0.88460 0.82224 0.84386 0.84133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.51 9.53 36.01 0.34 -0.16 16 2 C -0.04 -0.28 5.89 -104.48 -0.62 -0.90 16 3 C -0.13 -0.94 9.57 -40.03 -0.38 -1.32 16 4 C -0.06 -0.49 9.52 -39.16 -0.37 -0.86 16 5 C -0.11 -1.39 5.91 -104.61 -0.62 -2.01 16 6 C 0.56 7.92 7.76 -12.51 -0.10 7.82 16 7 O -0.50 -8.92 14.81 5.28 0.08 -8.85 16 8 N -0.71 -8.48 5.22 -54.09 -0.28 -8.76 16 9 C 0.12 1.53 4.29 -67.12 -0.29 1.24 16 10 C -0.14 -2.08 7.45 -25.82 -0.19 -2.27 16 11 C -0.12 -1.75 3.64 -89.71 -0.33 -2.08 16 12 C 0.17 3.20 6.10 -4.05 -0.02 3.18 16 13 N -0.76 -18.24 5.41 -59.91 -0.32 -18.56 16 14 C -0.24 -6.98 10.47 -15.06 -0.16 -7.14 16 15 H 0.09 2.75 8.06 -52.48 -0.42 2.33 16 16 C 0.00 0.05 5.50 -17.43 -0.10 -0.04 16 17 N -0.94 -29.87 13.97 55.49 0.78 -29.09 16 18 Si 0.88 22.50 27.74 -169.99 -4.71 17.79 16 19 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16 21 H -0.28 -6.68 6.52 56.52 0.37 -6.31 16 22 C -0.14 -1.58 7.38 -25.92 -0.19 -1.78 16 23 C 0.17 2.11 6.61 -84.58 -0.56 1.55 16 24 N -0.44 -5.99 8.44 -10.76 -0.09 -6.08 16 25 C 0.13 1.27 11.15 -17.44 -0.19 1.08 16 26 C -0.18 -1.22 10.03 -39.80 -0.40 -1.61 16 27 C -0.06 -0.43 9.36 -39.19 -0.37 -0.79 16 28 C -0.11 -1.05 5.74 -106.82 -0.61 -1.66 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.08 0.25 8.08 -51.93 -0.42 -0.17 16 31 H 0.07 0.24 6.42 -51.93 -0.33 -0.10 16 32 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 33 H 0.14 0.85 6.37 -52.48 -0.33 0.52 16 34 H 0.40 3.71 6.73 -40.82 -0.27 3.43 16 35 H 0.10 1.38 7.50 -51.93 -0.39 0.99 16 36 H 0.09 1.39 7.90 -51.93 -0.41 0.98 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.03 0.56 7.85 -51.93 -0.41 0.15 16 41 H 0.36 8.50 5.53 -40.82 -0.23 8.27 16 42 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.10 1.08 8.10 -51.93 -0.42 0.66 16 45 H 0.16 1.11 8.06 -52.48 -0.42 0.69 16 46 H 0.14 0.50 8.06 -52.48 -0.42 0.08 16 47 H 0.14 0.55 6.42 -52.49 -0.34 0.22 16 LS Contribution 384.34 15.07 5.79 5.79 Total: -1.00 -37.81 384.34 -10.44 -48.25 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -6.53 Total: 7.29 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -5.15 Total: -7.77 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: 0.08 Total: -62.49 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.08 Total: -8.85 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.71 Total: 17.79 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.81 -10.44 -48.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717388831.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.023 kcal (2) G-P(sol) polarization free energy of solvation -37.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds