Wall clock time and date at job start Tue Mar 31 2020 22:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36346 * 119.95968 * 2 1 4 4 C 1.38873 * 121.05464 * 179.69613 * 3 2 1 5 5 C 1.38738 * 120.72795 * 0.62756 * 4 3 2 6 6 C 1.47437 * 120.33574 * 179.67307 * 5 4 3 7 7 O 1.21596 * 120.00090 * 179.72243 * 6 5 4 8 8 N 1.34780 * 119.99471 * 359.73045 * 6 5 4 9 9 C 1.46497 * 119.99653 * 179.97438 * 8 6 5 10 10 C 1.53786 * 113.61643 * 105.85894 * 9 8 6 11 11 C 1.53962 * 87.01719 * 89.22773 * 10 9 8 12 12 C 1.52994 * 113.66220 * 139.93548 * 11 10 9 13 13 N 1.46498 * 109.47402 * 87.44478 * 12 11 10 14 14 C 1.36937 * 120.00198 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00227 * 359.97438 * 14 13 12 16 16 C 1.38812 * 119.99949 * 179.97438 * 14 13 12 17 17 N 1.31622 * 119.99752 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00247 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47535 * 89.99455 * 18 16 14 20 20 H 1.48501 * 109.47316 * 209.99801 * 18 16 14 21 21 H 1.48501 * 109.47022 * 329.99657 * 18 16 14 22 22 C 1.53781 * 113.61305 * 203.46742 * 9 8 6 23 23 C 1.41779 * 119.33461 * 359.40443 * 5 4 3 24 24 N 1.33355 * 121.05915 * 180.25336 * 23 5 4 25 25 C 1.31234 * 121.34910 * 179.97438 * 24 23 5 26 26 C 1.39226 * 121.69961 * 0.04264 * 25 24 23 27 27 C 1.36631 * 119.91192 * 359.97438 * 26 25 24 28 28 C 1.40435 * 119.95775 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47634 * 269.98359 * 1 2 3 30 30 H 1.09003 * 109.46987 * 29.98235 * 1 2 3 31 31 H 1.09001 * 109.47506 * 149.98036 * 1 2 3 32 32 H 1.08000 * 119.47116 * 0.04317 * 3 2 1 33 33 H 1.08004 * 119.63340 * 180.32420 * 4 3 2 34 34 H 0.96995 * 120.00200 * 359.97438 * 8 6 5 35 35 H 1.09002 * 112.84935 * 334.66222 * 9 8 6 36 36 H 1.08993 * 113.61491 * 203.74894 * 10 9 8 37 37 H 1.09000 * 113.61138 * 334.65232 * 10 9 8 38 38 H 1.09002 * 113.61454 * 270.79954 * 11 10 9 39 39 H 1.09005 * 109.46709 * 207.43538 * 12 11 10 40 40 H 1.08998 * 109.47556 * 327.43829 * 12 11 10 41 41 H 0.97001 * 120.00130 * 359.97438 * 13 12 11 42 42 H 0.97001 * 119.99757 * 180.02562 * 17 16 14 43 43 H 1.09001 * 113.61695 * 25.34675 * 22 9 8 44 44 H 1.08996 * 113.61580 * 156.16953 * 22 9 8 45 45 H 1.08005 * 119.14666 * 179.97438 * 25 24 23 46 46 H 1.08006 * 120.04235 * 179.97438 * 26 25 24 47 47 H 1.07992 * 120.92383 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1879 1.1813 0.0000 4 6 3.5764 1.2078 0.0063 5 6 4.3080 0.0290 -0.0003 6 6 5.7818 0.0674 -0.0007 7 8 6.4170 -0.9695 -0.0014 8 7 6.4251 1.2518 -0.0003 9 6 7.8895 1.2899 -0.0002 10 6 8.4955 1.6914 -1.3554 11 6 8.4064 3.1504 -0.8721 12 6 9.6190 4.0000 -1.2573 13 7 9.4094 4.5754 -2.5882 14 6 10.3681 5.3785 -3.1458 15 1 11.2788 5.5882 -2.6042 16 6 10.1697 5.9232 -4.4070 17 7 11.0910 6.6956 -4.9427 18 14 8.5944 5.5612 -5.3435 19 1 7.5742 6.5881 -5.0118 20 1 8.8685 5.5890 -6.8027 21 1 8.0882 4.2188 -4.9603 22 6 8.4717 2.5978 0.5615 23 6 3.6241 -1.2129 -0.0007 24 7 4.2929 -2.3666 -0.0019 25 6 3.6657 -3.5194 -0.0018 26 6 2.2756 -3.5959 -0.0014 27 6 1.5302 -2.4508 -0.0005 28 6 2.2083 -1.2167 -0.0005 29 1 -0.3634 -0.0003 1.0277 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3634 -0.8898 -0.5141 32 1 1.6386 2.1112 0.0007 33 1 4.0923 2.1566 0.0115 34 1 5.9184 2.0788 0.0000 35 1 8.3363 0.3932 0.4294 36 1 9.5174 1.3403 -1.4980 37 1 7.8489 1.4716 -2.2050 38 1 7.4585 3.6326 -1.1115 39 1 9.7460 4.8025 -0.5306 40 1 10.5119 3.3750 -1.2682 41 1 8.5914 4.3874 -3.0745 42 1 10.9522 7.0765 -5.8239 43 1 7.8060 3.1087 1.2571 44 1 9.4866 2.4947 0.9452 45 1 4.2429 -4.4323 -0.0032 46 1 1.7870 -4.5591 -0.0018 47 1 0.4510 -2.4911 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717388831.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:41 Heat of formation + Delta-G solvation = 35.043697 kcal Electronic energy + Delta-G solvation = -28056.791061 eV Core-core repulsion = 24204.542898 eV Total energy + Delta-G solvation = -3852.248163 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.11781 -41.04679 -39.34431 -38.21328 -36.48250 -35.17006 -34.36220 -33.19371 -32.02610 -31.55855 -29.17052 -28.14867 -26.65348 -25.31933 -25.10037 -24.50325 -23.55172 -22.85211 -21.21823 -20.51791 -19.52398 -19.19199 -18.72208 -18.03363 -17.06979 -16.72799 -16.60768 -16.21184 -15.98665 -15.76969 -15.45969 -15.34754 -15.04818 -14.98507 -14.87416 -14.44504 -14.29410 -14.09794 -13.97388 -13.86226 -13.51044 -13.37445 -13.09564 -13.00560 -12.79300 -12.72766 -12.35667 -12.20070 -12.18870 -11.88201 -11.72281 -11.43108 -11.37378 -11.19973 -11.11288 -10.89847 -10.16360 -10.04962 -9.83938 -9.28063 -9.17435 -8.03481 -5.36265 -0.88028 -0.19358 0.72102 1.36058 1.40131 1.47477 1.70086 2.06783 2.20559 2.47584 3.11607 3.27091 3.31084 3.46148 3.48647 3.56823 3.69469 3.81003 3.85888 3.87955 3.91991 3.94803 4.06047 4.10634 4.38486 4.40399 4.49468 4.54495 4.71423 4.74881 4.81445 4.83531 4.84623 4.89281 4.90982 4.96258 4.98024 5.07906 5.11576 5.14306 5.19517 5.25234 5.34267 5.41862 5.55500 5.66799 5.76056 5.82258 6.21087 6.54551 7.04121 7.07954 7.28058 7.85336 8.04264 9.18288 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015094 B = 0.002323 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.641951 B =12048.910010 C =12854.058698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.027 4.027 3 C -0.141 4.141 4 C -0.040 4.040 5 C -0.160 4.160 6 C 0.552 3.448 7 O -0.549 6.549 8 N -0.700 5.700 9 C 0.126 3.874 10 C -0.146 4.146 11 C -0.112 4.112 12 C 0.162 3.838 13 N -0.758 5.758 14 C -0.235 4.235 15 H 0.055 0.945 16 C -0.068 4.068 17 N -0.985 5.985 18 Si 0.958 3.042 19 H -0.273 1.273 20 H -0.297 1.297 21 H -0.256 1.256 22 C -0.115 4.115 23 C 0.136 3.864 24 N -0.498 5.498 25 C 0.119 3.881 26 C -0.175 4.175 27 C -0.053 4.053 28 C -0.130 4.130 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.168 0.832 33 H 0.158 0.842 34 H 0.411 0.589 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.052 0.948 38 H 0.097 0.903 39 H 0.029 0.971 40 H 0.022 0.978 41 H 0.365 0.635 42 H 0.258 0.742 43 H 0.096 0.904 44 H 0.105 0.895 45 H 0.173 0.827 46 H 0.175 0.825 47 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.430 -18.756 15.927 39.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.028 4.028 3 C -0.158 4.158 4 C -0.060 4.060 5 C -0.164 4.164 6 C 0.340 3.660 7 O -0.427 6.427 8 N -0.353 5.353 9 C 0.020 3.980 10 C -0.185 4.185 11 C -0.130 4.130 12 C 0.036 3.964 13 N -0.404 5.404 14 C -0.366 4.366 15 H 0.073 0.927 16 C -0.259 4.259 17 N -0.636 5.636 18 Si 0.785 3.215 19 H -0.198 1.198 20 H -0.224 1.224 21 H -0.181 1.181 22 C -0.153 4.153 23 C 0.013 3.987 24 N -0.206 5.206 25 C -0.052 4.052 26 C -0.195 4.195 27 C -0.079 4.079 28 C -0.132 4.132 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.186 0.814 33 H 0.175 0.825 34 H 0.248 0.752 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.071 0.929 38 H 0.115 0.885 39 H 0.047 0.953 40 H 0.040 0.960 41 H 0.198 0.802 42 H 0.067 0.933 43 H 0.114 0.886 44 H 0.123 0.877 45 H 0.190 0.810 46 H 0.193 0.807 47 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -28.816 -19.262 15.950 38.155 hybrid contribution -0.776 0.341 -1.128 1.411 sum -29.592 -18.922 14.822 38.124 Atomic orbital electron populations 1.21062 0.87476 1.04988 1.04337 1.20389 0.98286 0.91154 0.92953 1.21129 0.93205 0.99597 1.01879 1.21779 0.95279 0.96945 0.91993 1.19860 0.92375 0.93532 1.10616 1.18355 0.87750 0.83607 0.76265 1.90803 1.68530 1.33842 1.49511 1.45509 1.06470 1.08226 1.75085 1.21739 0.79878 0.99553 0.96810 1.23500 1.01330 0.96390 0.97311 1.22777 0.98582 0.94264 0.97392 1.20814 0.95974 0.94450 0.85126 1.42735 1.20343 1.59011 1.18263 1.19079 0.98165 1.20082 0.99251 0.92662 1.25552 1.01710 1.00068 0.98562 1.69895 1.36752 1.38990 1.17940 0.85357 0.79814 0.78922 0.77378 1.19845 1.22369 1.18072 1.23208 1.02959 0.93674 0.95447 1.18939 0.90542 0.91877 0.97301 1.68280 1.40872 0.98672 1.12729 1.23656 0.93782 0.96015 0.91760 1.22305 0.94413 1.01453 1.01288 1.21983 1.02239 0.90220 0.93454 1.18991 0.92749 0.96456 1.04994 0.88742 0.89093 0.89750 0.81404 0.82459 0.75159 0.89403 0.89654 0.92874 0.88492 0.95260 0.95999 0.80183 0.93347 0.88591 0.87656 0.81042 0.80748 0.80392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.46 9.53 71.24 0.68 0.22 16 2 C -0.03 -0.32 5.89 -19.77 -0.12 -0.43 16 3 C -0.14 -1.60 9.57 21.98 0.21 -1.39 16 4 C -0.04 -0.63 9.52 22.54 0.21 -0.41 16 5 C -0.16 -3.97 5.91 -19.86 -0.12 -4.08 16 6 C 0.55 16.34 7.76 86.67 0.67 17.01 16 7 O -0.55 -21.09 14.81 -4.02 -0.06 -21.15 16 8 N -0.70 -16.29 5.22 -443.29 -2.31 -18.60 16 9 C 0.13 3.17 4.29 45.52 0.20 3.36 16 10 C -0.15 -4.27 7.45 31.18 0.23 -4.04 16 11 C -0.11 -3.10 3.64 -10.21 -0.04 -3.13 16 12 C 0.16 6.10 6.10 86.38 0.53 6.63 16 13 N -0.76 -36.05 5.41 -343.46 -1.86 -37.91 16 14 C -0.23 -13.74 10.47 84.03 0.88 -12.86 16 15 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 16 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 17 N -0.98 -64.35 13.97 21.65 0.30 -64.05 16 18 Si 0.96 46.35 27.74 68.60 1.90 48.26 16 19 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 20 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 21 H -0.26 -11.34 6.52 99.48 0.65 -10.69 16 22 C -0.11 -2.43 7.38 31.12 0.23 -2.20 16 23 C 0.14 3.55 6.61 40.61 0.27 3.82 16 24 N -0.50 -14.49 8.44 -187.96 -1.59 -16.08 16 25 C 0.12 2.36 11.15 85.02 0.95 3.31 16 26 C -0.18 -2.11 10.03 22.13 0.22 -1.89 16 27 C -0.05 -0.62 9.36 22.52 0.21 -0.41 16 28 C -0.13 -2.29 5.74 -21.29 -0.12 -2.41 16 29 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 30 H 0.09 0.14 8.08 -2.39 -0.02 0.12 16 31 H 0.08 0.14 6.42 -2.39 -0.02 0.13 16 32 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16 33 H 0.16 1.56 6.37 -2.91 -0.02 1.54 16 34 H 0.41 6.90 6.73 -92.71 -0.62 6.27 16 35 H 0.09 2.49 7.50 -2.39 -0.02 2.47 16 36 H 0.08 2.60 7.90 -2.39 -0.02 2.58 16 37 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 39 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 40 H 0.02 0.86 7.85 -2.39 -0.02 0.84 16 41 H 0.37 16.55 5.53 -92.71 -0.51 16.04 16 42 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 43 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.11 2.13 8.10 -2.39 -0.02 2.11 16 45 H 0.17 2.56 8.06 -2.91 -0.02 2.53 16 46 H 0.18 0.70 8.06 -2.91 -0.02 0.67 16 47 H 0.18 0.59 6.42 -2.91 -0.02 0.57 16 Total: -1.00 -87.99 384.34 1.77 -86.22 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: -0.18 Total: 25.87 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: 5.56 Total: -2.55 kcal Atomic # 7 Polarization: -131.19 SS G_CDS: -5.45 Total: -136.64 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.06 Total: -21.15 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 1.90 Total: 48.26 kcal Total: -87.99 1.77 -86.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717388831.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.259 kcal (2) G-P(sol) polarization free energy of solvation -87.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds