Wall clock time and date at job start Tue Mar 31 2020 23:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38047 * 126.28818 * 2 1 4 4 C 1.47423 * 126.41784 * 359.97438 * 3 2 1 5 5 O 1.21609 * 119.99991 * 359.97438 * 4 3 2 6 6 N 1.34779 * 120.00300 * 179.97438 * 4 3 2 7 7 C 1.46499 * 120.00187 * 179.97438 * 6 4 3 8 8 C 1.53001 * 109.46851 * 179.97438 * 7 6 4 9 9 H 1.08993 * 109.47416 * 294.99799 * 8 7 6 10 10 C 1.53001 * 109.46848 * 174.99855 * 8 7 6 11 11 O 1.42897 * 109.47472 * 305.00379 * 10 8 7 12 12 N 1.46901 * 109.47245 * 55.00305 * 8 7 6 13 13 C 1.46895 * 110.99816 * 204.99659 * 12 8 7 14 14 C 1.50706 * 109.47182 * 179.97438 * 13 12 8 15 15 O 1.21297 * 119.99667 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00081 * 179.72734 * 14 13 12 17 17 C 1.37095 * 119.99878 * 180.02562 * 16 14 13 18 18 H 1.08004 * 120.00160 * 359.97438 * 17 16 14 19 19 C 1.38950 * 120.00380 * 179.97438 * 17 16 14 20 20 N 1.31412 * 119.99401 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00554 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46681 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47048 * 120.00010 * 21 19 17 24 24 H 1.48501 * 109.47100 * 240.00460 * 21 19 17 25 25 C 1.41295 * 107.16645 * 180.25151 * 3 2 1 26 26 N 1.30445 * 108.02399 * 359.62145 * 25 3 2 27 27 N 1.34259 * 126.29562 * 180.02562 * 2 1 3 28 28 C 1.46497 * 125.74932 * 359.94955 * 27 2 1 29 29 H 1.08992 * 109.47311 * 89.99525 * 1 2 3 30 30 H 1.09004 * 109.47138 * 209.99957 * 1 2 3 31 31 H 1.09006 * 109.47064 * 329.99054 * 1 2 3 32 32 H 0.97002 * 119.99552 * 359.97438 * 6 4 3 33 33 H 1.08997 * 109.47243 * 60.00001 * 7 6 4 34 34 H 1.08999 * 109.46836 * 299.99904 * 7 6 4 35 35 H 1.09005 * 109.46975 * 65.00179 * 10 8 7 36 36 H 1.08997 * 109.47675 * 185.00010 * 10 8 7 37 37 H 0.96703 * 114.00471 * 180.02562 * 11 10 8 38 38 H 1.00902 * 110.99849 * 328.95038 * 12 8 7 39 39 H 1.09001 * 109.47613 * 60.00104 * 13 12 8 40 40 H 1.08998 * 109.47678 * 300.00000 * 13 12 8 41 41 H 0.96998 * 120.00525 * 359.97438 * 16 14 13 42 42 H 0.97004 * 120.00112 * 179.97438 * 20 19 17 43 43 H 1.08003 * 125.98851 * 179.74014 * 25 3 2 44 44 H 1.09004 * 109.47346 * 90.00365 * 28 27 2 45 45 H 1.09003 * 109.47108 * 210.00446 * 28 27 2 46 46 H 1.09000 * 109.47622 * 330.00333 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6994 2.7878 -0.0015 6 7 2.7998 3.5108 0.0001 7 6 2.3643 4.9095 -0.0010 8 6 3.5900 5.8253 0.0006 9 1 4.1396 5.6951 0.9328 10 6 3.1386 7.2816 -0.1263 11 8 2.3201 7.4272 -1.2886 12 7 4.4595 5.4817 -1.1325 13 6 5.8507 5.8702 -0.8653 14 6 6.7109 5.5023 -2.0468 15 8 6.2137 4.9692 -3.0163 16 7 8.0314 5.7709 -2.0286 17 6 8.8138 5.4367 -3.1036 18 1 8.3720 4.9577 -3.9649 19 6 10.1752 5.7141 -3.0851 20 7 10.7126 6.2973 -2.0373 21 14 11.2414 5.2580 -4.5496 22 1 10.4011 4.6176 -5.5932 23 1 11.8706 6.4833 -5.1045 24 1 12.2997 4.3111 -4.1156 25 6 3.6590 0.6499 -0.0059 26 7 3.6340 -0.6543 -0.0010 27 7 2.3017 -1.0821 -0.0005 28 6 1.8501 -2.4757 -0.0001 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5140 32 1 3.7461 3.2974 0.0012 33 1 1.7647 5.1041 0.8882 34 1 1.7667 5.1032 -0.8918 35 1 2.5671 7.5633 0.7581 36 1 4.0128 7.9267 -0.2145 37 1 1.9976 8.3274 -1.4324 38 1 4.3944 4.4992 -1.3533 39 1 6.2098 5.3481 0.0217 40 1 5.9020 6.9462 -0.6991 41 1 8.4282 6.2014 -1.2552 42 1 11.6631 6.4906 -2.0242 43 1 4.5449 1.2677 -0.0114 44 1 1.7374 -2.8215 -1.0276 45 1 2.5851 -3.0957 0.5134 46 1 0.8918 -2.5470 0.5144 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717760517.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:31 Heat of formation + Delta-G solvation = -72.072618 kcal Electronic energy + Delta-G solvation = -29201.588181 eV Core-core repulsion = 24933.845844 eV Total energy + Delta-G solvation = -4267.742338 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.50965 -40.56659 -40.01249 -38.62426 -36.53958 -35.94153 -35.04299 -34.42823 -33.24330 -32.96052 -31.32838 -28.77644 -27.89711 -27.75992 -26.46417 -25.61551 -23.48308 -21.63589 -21.48649 -21.12833 -20.64719 -19.90558 -18.79380 -18.35042 -17.87523 -17.08829 -16.93813 -16.77701 -16.49100 -16.46043 -16.22875 -15.79593 -15.61702 -15.35714 -15.12209 -14.86387 -14.62077 -14.37280 -14.15687 -14.04796 -13.90745 -13.57821 -13.52669 -13.44908 -13.31701 -13.03719 -13.01121 -12.88163 -12.64462 -12.38911 -12.11826 -11.96850 -11.87176 -11.50248 -10.92762 -10.72209 -10.44502 -10.32050 -10.16629 -9.99404 -9.61203 -9.28942 -8.45876 -5.93742 0.46576 1.08288 1.36656 1.38406 1.42165 1.55996 2.07433 2.23479 2.30131 2.43033 2.87979 3.21985 3.45181 3.48740 3.51567 3.57364 3.83990 3.96633 4.02876 4.18383 4.30603 4.33897 4.37559 4.42904 4.46102 4.48975 4.57486 4.62420 4.66187 4.67975 4.75947 4.82133 4.94222 5.06065 5.11195 5.33293 5.42688 5.43611 5.87716 5.90587 6.12066 6.34863 6.41740 6.54958 6.62297 7.11030 7.14937 7.24732 7.58731 8.14841 8.71705 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009621 B = 0.002749 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2909.597153 B =10183.441079 C =12595.675454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.157 3.843 3 C -0.327 4.327 4 C 0.598 3.402 5 O -0.578 6.578 6 N -0.722 5.722 7 C 0.134 3.866 8 C 0.077 3.923 9 H 0.089 0.911 10 C 0.088 3.912 11 O -0.582 6.582 12 N -0.673 5.673 13 C 0.063 3.937 14 C 0.438 3.562 15 O -0.623 6.623 16 N -0.573 5.573 17 C -0.331 4.331 18 H 0.076 0.924 19 C -0.012 4.012 20 N -0.919 5.919 21 Si 0.989 3.011 22 H -0.275 1.275 23 H -0.271 1.271 24 H -0.270 1.270 25 C 0.082 3.918 26 N -0.326 5.326 27 N -0.362 5.362 28 C 0.083 3.917 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.402 0.598 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.051 0.949 37 H 0.389 0.611 38 H 0.342 0.658 39 H 0.076 0.924 40 H 0.105 0.895 41 H 0.397 0.603 42 H 0.277 0.723 43 H 0.202 0.798 44 H 0.092 0.908 45 H 0.099 0.901 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.757 -9.097 12.449 24.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.023 3.977 3 C -0.341 4.341 4 C 0.387 3.613 5 O -0.459 6.459 6 N -0.374 5.374 7 C 0.010 3.990 8 C -0.032 4.032 9 H 0.107 0.893 10 C 0.009 3.991 11 O -0.389 6.389 12 N -0.308 5.308 13 C -0.069 4.069 14 C 0.225 3.775 15 O -0.510 6.510 16 N -0.210 5.210 17 C -0.460 4.460 18 H 0.094 0.906 19 C -0.212 4.212 20 N -0.561 5.561 21 Si 0.813 3.187 22 H -0.200 1.200 23 H -0.197 1.197 24 H -0.195 1.195 25 C -0.106 4.106 26 N -0.145 5.145 27 N -0.141 5.141 28 C -0.056 4.056 29 H 0.111 0.889 30 H 0.123 0.877 31 H 0.108 0.892 32 H 0.238 0.762 33 H 0.103 0.897 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.238 0.762 38 H 0.162 0.838 39 H 0.094 0.906 40 H 0.123 0.877 41 H 0.231 0.769 42 H 0.087 0.913 43 H 0.218 0.782 44 H 0.110 0.890 45 H 0.118 0.882 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -19.064 -10.508 11.456 24.598 hybrid contribution 1.381 0.747 0.113 1.574 sum -17.683 -9.762 11.569 23.277 Atomic orbital electron populations 1.20741 0.84046 1.05591 1.04822 1.21956 0.96113 0.86087 0.93537 1.20069 0.93565 0.93480 1.27028 1.17304 0.85034 0.84209 0.74748 1.90692 1.17462 1.84817 1.52940 1.45750 1.09832 1.06220 1.75601 1.21333 0.96362 0.78537 1.02759 1.22049 0.92796 0.95376 0.92998 0.89345 1.22203 0.94202 0.94393 0.88264 1.86571 1.69912 1.35340 1.47056 1.60009 1.05777 1.25413 1.39621 1.21659 0.87983 1.03007 0.94273 1.20908 0.82776 0.83425 0.90351 1.90520 1.73690 1.48919 1.37840 1.41911 1.06705 1.54156 1.18243 1.19659 0.90469 1.38321 0.97584 0.90600 1.25978 0.97803 0.96539 1.00832 1.69667 1.13880 1.42267 1.30249 0.84921 0.77777 0.78258 0.77700 1.20010 1.19653 1.19538 1.24309 0.97711 0.92171 0.96374 1.77159 0.97565 1.13618 1.26197 1.48746 1.03285 1.07822 1.54258 1.22404 1.02834 0.75025 1.05338 0.88850 0.87673 0.89165 0.76181 0.89738 0.92047 0.90475 0.93075 0.76201 0.83752 0.90623 0.87691 0.76893 0.91335 0.78182 0.88968 0.88229 0.86070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.41 9.57 71.24 0.68 -0.73 16 2 C 0.16 3.36 7.01 42.14 0.30 3.66 16 3 C -0.33 -8.34 6.13 -20.15 -0.12 -8.46 16 4 C 0.60 16.66 7.81 86.66 0.68 17.34 16 5 O -0.58 -18.67 14.84 -4.06 -0.06 -18.73 16 6 N -0.72 -17.57 4.98 -466.37 -2.32 -19.90 16 7 C 0.13 3.20 5.20 86.38 0.45 3.65 16 8 C 0.08 1.71 2.60 44.92 0.12 1.83 16 9 H 0.09 1.50 7.80 -2.39 -0.02 1.48 16 10 C 0.09 1.73 6.80 71.98 0.49 2.22 16 11 O -0.58 -14.01 12.64 -148.98 -1.88 -15.89 16 12 N -0.67 -20.82 5.87 -495.58 -2.91 -23.73 16 13 C 0.06 2.02 5.96 85.56 0.51 2.54 16 14 C 0.44 20.52 7.82 87.66 0.69 21.21 16 15 O -0.62 -34.87 15.78 -3.08 -0.05 -34.91 16 16 N -0.57 -28.95 5.29 -306.98 -1.62 -30.58 16 17 C -0.33 -18.78 9.68 84.04 0.81 -17.97 16 18 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 19 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 20 N -0.92 -49.24 13.05 21.66 0.28 -48.96 16 21 Si 0.99 43.17 29.55 68.60 2.03 45.20 16 22 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 23 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 25 C 0.08 2.02 11.50 85.65 0.99 3.00 16 26 N -0.33 -8.37 12.50 -56.27 -0.70 -9.08 16 27 N -0.36 -7.21 3.98 -354.31 -1.41 -8.62 16 28 C 0.08 0.76 11.24 127.77 1.44 2.20 16 29 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.10 0.77 7.05 -2.39 -0.02 0.75 16 31 H 0.09 1.73 6.50 -2.38 -0.02 1.71 16 32 H 0.40 8.76 6.32 -92.71 -0.59 8.17 16 33 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.06 1.86 7.40 -2.39 -0.02 1.85 16 35 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 36 H 0.05 1.00 7.35 -2.39 -0.02 0.98 16 37 H 0.39 5.80 9.12 -74.06 -0.68 5.12 16 38 H 0.34 11.35 6.41 -89.69 -0.58 10.77 16 39 H 0.08 1.98 8.06 -2.39 -0.02 1.96 16 40 H 0.11 3.03 7.36 -2.39 -0.02 3.01 16 41 H 0.40 18.87 7.90 -92.71 -0.73 18.14 16 42 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 43 H 0.20 4.08 7.50 -2.91 -0.02 4.06 16 44 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 45 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.12 0.34 7.02 -2.39 -0.02 0.32 16 Total: -1.00 -83.33 388.59 -2.67 -85.99 By element: Atomic # 1 Polarization: 50.38 SS G_CDS: -1.50 Total: 48.88 kcal Atomic # 6 Polarization: 22.83 SS G_CDS: 7.48 Total: 30.32 kcal Atomic # 7 Polarization: -132.17 SS G_CDS: -8.69 Total: -140.86 kcal Atomic # 8 Polarization: -67.55 SS G_CDS: -1.99 Total: -69.54 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -83.33 -2.67 -85.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717760517.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.921 kcal (2) G-P(sol) polarization free energy of solvation -83.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds