Wall clock time and date at job start Tue Mar 31 2020 22:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39227 * 119.15709 * 2 1 4 4 C 1.36638 * 119.90253 * 179.97438 * 3 2 1 5 5 C 1.40790 * 118.15679 * 0.02562 * 4 3 2 6 6 C 1.40478 * 121.25555 * 179.97438 * 5 4 3 7 7 C 1.36318 * 120.08848 * 180.02562 * 6 5 4 8 8 C 1.38914 * 121.04690 * 359.68261 * 7 6 5 9 9 C 1.38707 * 120.73459 * 0.62700 * 8 7 6 10 10 C 1.47436 * 120.33380 * 179.67817 * 9 8 7 11 11 O 1.21599 * 119.99881 * 153.80471 * 10 9 8 12 12 N 1.34779 * 119.99947 * 333.80503 * 10 9 8 13 13 C 1.47423 * 125.64672 * 4.93992 * 12 10 9 14 14 C 1.54906 * 104.83268 * 204.09299 * 13 12 10 15 15 C 1.55161 * 101.57987 * 322.99184 * 14 13 12 16 16 C 1.47020 * 125.64844 * 184.89655 * 12 10 9 17 17 H 1.09005 * 109.87894 * 59.40638 * 16 12 10 18 18 C 1.52991 * 109.88519 * 298.39794 * 16 12 10 19 19 N 1.46504 * 109.47335 * 73.00464 * 18 16 12 20 20 C 1.36933 * 119.99885 * 187.38669 * 19 18 16 21 21 H 1.08003 * 120.00330 * 0.02562 * 20 19 18 22 22 C 1.38812 * 120.00024 * 180.02562 * 20 19 18 23 23 N 1.31624 * 119.99664 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00242 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.46867 * 270.00135 * 24 22 20 26 26 H 1.48495 * 109.47242 * 29.99926 * 24 22 20 27 27 H 1.48499 * 109.47177 * 150.00110 * 24 22 20 28 28 C 1.41560 * 118.94540 * 359.97438 * 5 4 3 29 29 N 1.31245 * 119.14903 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.46855 * 89.99794 * 1 2 3 31 31 H 1.08994 * 109.47392 * 209.99666 * 1 2 3 32 32 H 1.08998 * 109.47166 * 330.00511 * 1 2 3 33 33 H 1.07994 * 120.04640 * 359.97438 * 3 2 1 34 34 H 1.07998 * 120.92106 * 179.97438 * 4 3 2 35 35 H 1.08006 * 119.95693 * 0.02562 * 6 5 4 36 36 H 1.07993 * 119.47910 * 179.97438 * 7 6 5 37 37 H 1.08001 * 119.62847 * 180.30263 * 8 7 6 38 38 H 1.08998 * 110.36762 * 322.93667 * 13 12 10 39 39 H 1.09002 * 110.36807 * 85.25900 * 13 12 10 40 40 H 1.08993 * 111.00510 * 81.06295 * 14 13 12 41 41 H 1.09003 * 111.00772 * 204.92096 * 14 13 12 42 42 H 1.09000 * 110.72107 * 277.13576 * 15 14 13 43 43 H 1.09007 * 110.72197 * 153.86433 * 15 14 13 44 44 H 1.09006 * 109.47079 * 313.00693 * 18 16 12 45 45 H 1.09001 * 109.47524 * 193.01110 * 18 16 12 46 46 H 0.96997 * 119.99596 * 7.39402 * 19 18 16 47 47 H 0.97007 * 119.99406 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.2159 0.0000 4 6 3.5516 1.2336 0.0005 5 6 4.2320 0.0011 0.0005 6 6 5.6356 -0.0566 0.0005 7 6 6.2700 -1.2632 0.0000 8 6 5.5501 -2.4511 0.0060 9 6 4.1631 -2.4395 -0.0003 10 6 3.4078 -3.7057 -0.0010 11 8 2.2827 -3.7428 0.4589 12 7 3.9644 -4.8221 -0.5113 13 6 5.3485 -4.9440 -1.0041 14 6 5.3103 -6.1256 -2.0051 15 6 4.3066 -7.0865 -1.3147 16 6 3.2921 -6.1202 -0.6678 17 1 2.4191 -6.0102 -1.3113 18 6 2.8653 -6.6536 0.7011 19 7 1.7228 -5.8793 1.1924 20 6 1.2605 -6.0744 2.4665 21 1 1.7384 -6.7989 3.1094 22 6 0.1776 -5.3412 2.9319 23 7 -0.4051 -4.4587 2.1483 24 14 -0.4525 -5.6068 4.6702 25 1 -1.4913 -6.6680 4.6633 26 1 0.6724 -6.0210 5.5466 27 1 -1.0397 -4.3427 5.1825 28 6 3.4787 -1.1974 0.0005 29 7 2.1463 -1.1462 -0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5137 32 1 -0.3633 0.8900 0.5137 33 1 1.6324 2.1435 -0.0004 34 1 4.0944 2.1673 0.0001 35 1 6.2129 0.8562 0.0009 36 1 7.3495 -1.2960 -0.0005 37 1 6.0762 -3.3943 0.0104 38 1 5.6531 -4.0279 -1.5099 39 1 6.0263 -5.1668 -0.1800 40 1 4.9366 -5.8026 -2.9767 41 1 6.2924 -6.5889 -2.1003 42 1 4.8073 -7.6858 -0.5542 43 1 3.8164 -7.7252 -2.0495 44 1 3.6951 -6.5613 1.4019 45 1 2.5815 -7.7021 0.6102 46 1 1.2937 -5.2285 0.6151 47 1 -1.1616 -3.9460 2.4737 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723919252.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:02 Heat of formation + Delta-G solvation = 77.210098 kcal Electronic energy + Delta-G solvation = -30291.363949 eV Core-core repulsion = 26440.944259 eV Total energy + Delta-G solvation = -3850.419690 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.89414 -39.54737 -37.19725 -36.62238 -34.19570 -33.23091 -31.96742 -31.44585 -31.04579 -29.72726 -28.54953 -27.70478 -25.06393 -23.91572 -23.61026 -22.52423 -22.25710 -21.27358 -20.73099 -18.71542 -18.22682 -17.19674 -16.63088 -16.28923 -16.06363 -15.65878 -14.71892 -14.69397 -14.54688 -14.19741 -13.90846 -13.68383 -13.40403 -13.26325 -13.22961 -12.81667 -12.79601 -12.70638 -12.62268 -12.17125 -11.97331 -11.80580 -11.57530 -11.36656 -11.32445 -11.22159 -11.02103 -10.72889 -10.61536 -10.52120 -10.38102 -10.31101 -9.84152 -9.43282 -9.15868 -8.59230 -8.57422 -8.48721 -8.10100 -7.92808 -6.42303 -5.32747 -2.59477 0.32357 0.90511 1.94216 2.88871 3.43720 3.61634 3.65797 3.67751 3.72928 4.31334 4.38552 4.53190 4.65027 4.71397 4.80550 4.85114 4.88394 4.92656 5.03446 5.11141 5.15826 5.30727 5.43878 5.44552 5.52643 5.62797 5.67077 5.79946 5.83231 5.88774 5.92046 5.94504 5.95871 5.98703 6.08821 6.13630 6.19876 6.27715 6.32547 6.34645 6.40642 6.59758 6.67129 6.79223 6.90331 6.95902 7.16313 7.99410 8.13899 8.31456 8.78869 9.11877 9.96921 10.64418 11.06128 11.87017 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008102 B = 0.005511 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3454.907725 B = 5079.856176 C = 7585.602066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.161 3.839 3 C -0.171 4.171 4 C -0.064 4.064 5 C -0.117 4.117 6 C -0.083 4.083 7 C -0.128 4.128 8 C -0.094 4.094 9 C -0.082 4.082 10 C 0.540 3.460 11 O -0.408 6.408 12 N -0.618 5.618 13 C 0.092 3.908 14 C -0.134 4.134 15 C -0.124 4.124 16 C 0.134 3.866 17 H 0.072 0.928 18 C 0.145 3.855 19 N -0.718 5.718 20 C -0.236 4.236 21 H 0.058 0.942 22 C -0.008 4.008 23 N -0.907 5.907 24 Si 0.892 3.108 25 H -0.294 1.294 26 H -0.287 1.287 27 H -0.295 1.295 28 C 0.167 3.833 29 N -0.427 5.427 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.146 0.854 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.016 0.984 45 H 0.014 0.986 46 H 0.402 0.598 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.773 9.609 -11.485 21.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.008 3.992 3 C -0.191 4.191 4 C -0.090 4.090 5 C -0.119 4.119 6 C -0.102 4.102 7 C -0.146 4.146 8 C -0.114 4.114 9 C -0.086 4.086 10 C 0.326 3.674 11 O -0.273 6.273 12 N -0.357 5.357 13 C -0.032 4.032 14 C -0.172 4.172 15 C -0.162 4.162 16 C 0.030 3.970 17 H 0.090 0.910 18 C 0.016 3.984 19 N -0.371 5.371 20 C -0.368 4.368 21 H 0.076 0.924 22 C -0.205 4.205 23 N -0.555 5.555 24 Si 0.724 3.276 25 H -0.222 1.222 26 H -0.213 1.213 27 H -0.222 1.222 28 C 0.043 3.957 29 N -0.134 5.134 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.153 0.847 34 H 0.154 0.846 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.163 0.837 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.034 0.966 45 H 0.032 0.968 46 H 0.246 0.754 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 14.596 8.817 -11.026 20.306 hybrid contribution 0.245 0.935 1.046 1.424 sum 14.841 9.752 -9.979 20.370 Atomic orbital electron populations 1.20815 0.88483 1.04366 1.03057 1.21713 0.97679 0.87807 0.91979 1.21784 0.95017 0.99386 1.02880 1.21364 0.94457 0.96817 0.96366 1.18795 0.94707 0.94019 1.04371 1.21043 0.92593 0.98410 0.98125 1.20783 1.00160 0.92095 1.01566 1.22003 0.93029 0.99665 0.96666 1.20017 0.93111 0.92846 1.02637 1.17677 0.87455 0.81796 0.80508 1.91017 1.16101 1.81898 1.38298 1.48344 1.12357 1.10225 1.64765 1.22588 0.85266 0.98816 0.96481 1.22789 0.99882 0.96007 0.98482 1.22628 0.96614 0.97216 0.99776 1.21843 0.94844 0.82050 0.98227 0.91034 1.20961 0.91859 0.94297 0.91282 1.43002 1.33332 1.46455 1.14349 1.19090 1.09963 1.17069 0.90677 0.92438 1.24648 0.99405 0.99347 0.97126 1.69774 1.24108 1.27024 1.34545 0.86424 0.78587 0.76594 0.86007 1.22181 1.21311 1.22157 1.18626 0.89512 0.91280 0.96274 1.68194 1.07446 1.27817 1.09987 0.90455 0.88722 0.91044 0.84740 0.84582 0.85407 0.85328 0.83686 0.90507 0.91716 0.90815 0.90269 0.90441 0.90298 0.96606 0.96815 0.75443 0.94386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.64 10.15 36.01 0.37 -1.27 16 2 C 0.16 2.71 6.78 -82.48 -0.56 2.15 16 3 C -0.17 -2.19 9.64 -39.79 -0.38 -2.58 16 4 C -0.06 -0.77 9.89 -39.20 -0.39 -1.16 16 5 C -0.12 -1.69 5.74 -106.82 -0.61 -2.30 16 6 C -0.08 -0.93 9.75 -39.43 -0.38 -1.31 16 7 C -0.13 -1.39 9.93 -40.02 -0.40 -1.79 16 8 C -0.09 -1.26 7.93 -39.16 -0.31 -1.57 16 9 C -0.08 -1.50 5.76 -104.61 -0.60 -2.10 16 10 C 0.54 11.60 7.40 -12.51 -0.09 11.51 16 11 O -0.41 -11.00 11.57 5.28 0.06 -10.94 16 12 N -0.62 -10.94 3.07 -164.28 -0.50 -11.44 16 13 C 0.09 1.11 5.02 -2.53 -0.01 1.10 16 14 C -0.13 -1.34 7.09 -24.58 -0.17 -1.52 16 15 C -0.12 -1.55 6.46 -24.90 -0.16 -1.71 16 16 C 0.13 2.42 3.11 -66.96 -0.21 2.21 16 17 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 18 C 0.15 3.28 5.63 -4.04 -0.02 3.26 16 19 N -0.72 -20.59 4.11 -59.91 -0.25 -20.84 16 20 C -0.24 -7.37 9.99 -15.06 -0.15 -7.52 16 21 H 0.06 1.75 7.83 -52.48 -0.41 1.34 16 22 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 23 N -0.91 -29.99 13.06 55.49 0.72 -29.27 16 24 Si 0.89 24.45 29.55 -169.99 -5.02 19.43 16 25 H -0.29 -7.93 7.11 56.52 0.40 -7.53 16 26 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 27 H -0.29 -8.13 7.11 56.52 0.40 -7.73 16 28 C 0.17 3.11 6.59 -84.58 -0.56 2.55 16 29 N -0.43 -8.84 8.66 -7.01 -0.06 -8.90 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.09 1.77 8.14 -51.93 -0.42 1.34 16 32 H 0.07 0.83 8.07 -51.93 -0.42 0.41 16 33 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 36 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.15 1.64 4.39 -52.49 -0.23 1.41 16 38 H 0.08 0.82 5.99 -51.93 -0.31 0.51 16 39 H 0.06 0.71 7.39 -51.93 -0.38 0.33 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.92 7.85 -51.93 -0.41 0.52 16 43 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.01 0.32 8.12 -51.93 -0.42 -0.11 16 46 H 0.40 12.33 4.83 -40.91 -0.20 12.14 16 47 H 0.25 7.88 8.31 -40.82 -0.34 7.54 16 LS Contribution 375.69 15.07 5.66 5.66 Total: -1.00 -40.08 375.69 -10.70 -50.79 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -6.57 Total: 7.93 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -4.75 Total: -2.41 kcal Atomic # 7 Polarization: -70.36 SS G_CDS: -0.09 Total: -70.45 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.06 Total: -10.94 kcal Atomic # 14 Polarization: 24.45 SS G_CDS: -5.02 Total: 19.43 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -40.08 -10.70 -50.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723919252.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.996 kcal (2) G-P(sol) polarization free energy of solvation -40.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds