Wall clock time and date at job start Tue Mar 31 2020 22:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39227 * 119.15075 * 2 1 4 4 C 1.36635 * 119.89990 * 179.97438 * 3 2 1 5 5 C 1.40797 * 118.15709 * 0.02562 * 4 3 2 6 6 C 1.40473 * 121.25298 * 180.02562 * 5 4 3 7 7 C 1.36319 * 120.08500 * 180.02562 * 6 5 4 8 8 C 1.38918 * 121.05124 * 359.67724 * 7 6 5 9 9 C 1.38705 * 120.72642 * 0.60388 * 8 7 6 10 10 C 1.47432 * 120.32819 * 179.69589 * 9 8 7 11 11 O 1.21602 * 120.00145 * 205.32413 * 10 9 8 12 12 N 1.34776 * 120.00166 * 25.32525 * 10 9 8 13 13 C 1.47424 * 125.64967 * 4.84502 * 12 10 9 14 14 C 1.54900 * 104.83639 * 155.91454 * 13 12 10 15 15 C 1.55163 * 101.58065 * 37.00996 * 14 13 12 16 16 C 1.47029 * 125.64774 * 184.89442 * 12 10 9 17 17 H 1.09000 * 110.01271 * 300.50167 * 16 12 10 18 18 C 1.52995 * 109.88261 * 61.60160 * 16 12 10 19 19 N 1.46508 * 109.46866 * 282.17175 * 18 16 12 20 20 C 1.36938 * 119.99651 * 166.81763 * 19 18 16 21 21 H 1.07996 * 120.00269 * 349.63809 * 20 19 18 22 22 C 1.38813 * 119.99354 * 169.63870 * 20 19 18 23 23 N 1.31618 * 119.99718 * 199.23438 * 22 20 19 24 24 Si 1.86804 * 120.00226 * 19.23739 * 22 20 19 25 25 H 1.48502 * 109.46753 * 276.13744 * 24 22 20 26 26 H 1.48495 * 109.47194 * 36.13612 * 24 22 20 27 27 H 1.48494 * 109.47061 * 156.14115 * 24 22 20 28 28 C 1.41555 * 118.94505 * 0.02562 * 5 4 3 29 29 N 1.31235 * 119.15608 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.46879 * 275.11431 * 1 2 3 31 31 H 1.08993 * 109.47199 * 35.11312 * 1 2 3 32 32 H 1.08996 * 109.47096 * 155.11836 * 1 2 3 33 33 H 1.08001 * 120.04922 * 359.97438 * 3 2 1 34 34 H 1.08001 * 120.91901 * 179.97438 * 4 3 2 35 35 H 1.07999 * 119.95950 * 359.97438 * 6 5 4 36 36 H 1.08003 * 119.47132 * 179.97438 * 7 6 5 37 37 H 1.07996 * 119.63228 * 180.30583 * 8 7 6 38 38 H 1.09004 * 110.36717 * 37.07185 * 13 12 10 39 39 H 1.09002 * 110.45631 * 274.80595 * 13 12 10 40 40 H 1.08997 * 111.00863 * 278.93806 * 14 13 12 41 41 H 1.08998 * 111.04052 * 155.09480 * 14 13 12 42 42 H 1.08997 * 110.71835 * 206.13552 * 15 14 13 43 43 H 1.08997 * 110.71934 * 82.86363 * 15 14 13 44 44 H 1.08993 * 109.47513 * 162.17202 * 18 16 12 45 45 H 1.08999 * 109.47489 * 42.16974 * 18 16 12 46 46 H 0.97001 * 119.99893 * 346.82127 * 19 18 16 47 47 H 0.97002 * 119.99553 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1853 1.2159 0.0000 4 6 3.5515 1.2338 0.0005 5 6 4.2321 0.0012 0.0005 6 6 5.6356 -0.0563 0.0016 7 6 6.2701 -1.2628 0.0010 8 6 5.5503 -2.4509 0.0061 9 6 4.1633 -2.4393 -0.0007 10 6 3.4081 -3.7055 -0.0020 11 8 2.2814 -3.7410 -0.4579 12 7 3.9666 -4.8238 0.5021 13 6 5.2767 -4.9023 1.1737 14 6 5.1857 -6.1590 2.0748 15 6 4.3532 -7.1202 1.1856 16 6 3.3707 -6.1675 0.4724 17 1 2.4139 -6.1629 0.9945 18 6 3.1705 -6.6160 -0.9766 19 7 1.9840 -5.9596 -1.5314 20 6 1.7534 -5.9890 -2.8809 21 1 2.5207 -6.3453 -3.5522 22 6 0.5334 -5.5608 -3.3859 23 7 0.1566 -5.9251 -4.5932 24 14 -0.5736 -4.4675 -2.3521 25 1 -1.3829 -5.3091 -1.4344 26 1 0.2595 -3.5292 -1.5579 27 1 -1.4774 -3.6954 -3.2420 28 6 3.4788 -1.1973 -0.0006 29 7 2.1464 -1.1461 -0.0005 30 1 -0.3633 0.0916 1.0236 31 1 -0.3633 0.8406 -0.5911 32 1 -0.3633 -0.9322 -0.4324 33 1 1.6322 2.1436 -0.0004 34 1 4.0943 2.1675 0.0001 35 1 6.2128 0.8565 0.0020 36 1 7.3496 -1.2955 0.0014 37 1 6.0764 -3.3940 0.0105 38 1 5.4462 -4.0123 1.7798 39 1 6.0745 -5.0183 0.4401 40 1 4.6629 -5.9359 3.0048 41 1 6.1753 -6.5700 2.2742 42 1 3.8138 -7.8424 1.7985 43 1 4.9922 -7.6273 0.4627 44 1 3.0352 -7.6971 -1.0069 45 1 4.0458 -6.3427 -1.5658 46 1 1.3619 -5.5042 -0.9428 47 1 -0.6958 -5.6255 -4.9463 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723919253.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:06 Heat of formation + Delta-G solvation = 65.276633 kcal Electronic energy + Delta-G solvation = -30326.945336 eV Core-core repulsion = 26476.008172 eV Total energy + Delta-G solvation = -3850.937164 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.05492 -39.71101 -37.36747 -36.81917 -34.41165 -33.42494 -32.12922 -31.63064 -31.26813 -29.93821 -28.98333 -27.90718 -25.27082 -24.11663 -23.77925 -22.55135 -22.30374 -21.18281 -20.88221 -18.96738 -18.35825 -17.49869 -16.97403 -16.47088 -16.28579 -15.87221 -14.91763 -14.75224 -14.71907 -14.24589 -14.06201 -13.79509 -13.69054 -13.52734 -13.28384 -12.98500 -12.94206 -12.82687 -12.60729 -12.21947 -12.11900 -12.06682 -11.90011 -11.64418 -11.45509 -11.39451 -11.32753 -10.99273 -10.66162 -10.53346 -10.49053 -10.27500 -9.82207 -9.47918 -9.37296 -8.93956 -8.74128 -8.40343 -8.27380 -8.14434 -6.85043 -5.51774 -2.77959 0.16367 0.75309 1.77609 2.73480 3.25211 3.50001 3.70244 3.76635 4.10902 4.13866 4.19982 4.38594 4.52322 4.56780 4.66568 4.73355 4.75695 4.92516 4.96205 4.99806 5.01596 5.15665 5.26382 5.32064 5.39909 5.47486 5.51784 5.62421 5.63218 5.69489 5.73597 5.79631 5.83729 5.86366 5.95735 5.97893 6.02464 6.09811 6.13895 6.19699 6.22501 6.30034 6.41780 6.50100 6.73444 6.80195 6.98721 7.92448 8.10456 8.30511 8.67268 8.83916 9.57896 10.31587 10.53906 11.64958 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008420 B = 0.005879 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3324.663285 B = 4761.792709 C = 7135.490023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.159 3.841 3 C -0.171 4.171 4 C -0.060 4.060 5 C -0.116 4.116 6 C -0.079 4.079 7 C -0.127 4.127 8 C -0.082 4.082 9 C -0.089 4.089 10 C 0.558 3.442 11 O -0.448 6.448 12 N -0.617 5.617 13 C 0.096 3.904 14 C -0.133 4.133 15 C -0.124 4.124 16 C 0.128 3.872 17 H 0.073 0.927 18 C 0.153 3.847 19 N -0.739 5.739 20 C -0.237 4.237 21 H 0.078 0.922 22 C 0.009 3.991 23 N -0.933 5.933 24 Si 0.849 3.151 25 H -0.294 1.294 26 H -0.225 1.225 27 H -0.304 1.304 28 C 0.168 3.832 29 N -0.438 5.438 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.144 0.856 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.025 0.975 45 H 0.029 0.971 46 H 0.371 0.629 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.903 12.733 17.450 26.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.006 3.994 3 C -0.191 4.191 4 C -0.086 4.086 5 C -0.118 4.118 6 C -0.098 4.098 7 C -0.145 4.145 8 C -0.103 4.103 9 C -0.093 4.093 10 C 0.345 3.655 11 O -0.317 6.317 12 N -0.355 5.355 13 C -0.028 4.028 14 C -0.171 4.171 15 C -0.162 4.162 16 C 0.025 3.975 17 H 0.091 0.909 18 C 0.025 3.975 19 N -0.387 5.387 20 C -0.366 4.366 21 H 0.096 0.904 22 C -0.186 4.186 23 N -0.581 5.581 24 Si 0.678 3.322 25 H -0.222 1.222 26 H -0.148 1.148 27 H -0.231 1.231 28 C 0.044 3.956 29 N -0.145 5.145 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.154 0.846 34 H 0.156 0.844 35 H 0.148 0.852 36 H 0.149 0.851 37 H 0.162 0.838 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.043 0.957 45 H 0.047 0.953 46 H 0.207 0.793 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 13.826 11.886 16.916 24.872 hybrid contribution -0.201 1.655 0.366 1.707 sum 13.624 13.541 17.283 25.839 Atomic orbital electron populations 1.20826 0.88697 1.04394 1.02908 1.21667 0.97509 0.87990 0.92210 1.21751 0.95059 0.99319 1.02957 1.21399 0.94436 0.96910 0.95811 1.18793 0.94769 0.93949 1.04292 1.21077 0.92537 0.98541 0.97639 1.20813 1.00338 0.92008 1.01331 1.21915 0.92861 0.99682 0.95791 1.19951 0.93206 0.92624 1.03511 1.17573 0.86698 0.81689 0.79555 1.90987 1.16540 1.83117 1.41030 1.48373 1.19724 1.07616 1.59768 1.22511 0.86535 0.98726 0.94980 1.22787 1.00824 0.95313 0.98212 1.22635 0.97799 0.97208 0.98576 1.21934 0.96478 0.80961 0.98120 0.90920 1.20963 0.91246 0.95357 0.89974 1.42710 1.25566 1.65007 1.05395 1.18862 0.98581 1.36644 0.82553 0.90402 1.24512 0.96429 1.01427 0.96266 1.69879 1.22141 1.47666 1.18391 0.87012 0.80951 0.83779 0.80473 1.22195 1.14791 1.23091 1.18583 0.89343 0.91376 0.96256 1.68120 1.07798 1.27954 1.10673 0.90238 0.90543 0.89658 0.84590 0.84369 0.85196 0.85098 0.83837 0.90828 0.91496 0.90797 0.90054 0.90106 0.90179 0.95727 0.95268 0.79332 0.93660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 10.12 36.01 0.36 -1.10 16 2 C 0.16 2.44 6.78 -82.48 -0.56 1.88 16 3 C -0.17 -1.99 9.66 -39.79 -0.38 -2.37 16 4 C -0.06 -0.65 9.89 -39.19 -0.39 -1.04 16 5 C -0.12 -1.55 5.74 -106.82 -0.61 -2.16 16 6 C -0.08 -0.81 9.75 -39.43 -0.38 -1.20 16 7 C -0.13 -1.26 9.93 -40.02 -0.40 -1.66 16 8 C -0.08 -1.03 8.04 -39.16 -0.31 -1.35 16 9 C -0.09 -1.51 5.69 -104.62 -0.60 -2.11 16 10 C 0.56 11.13 7.31 -12.52 -0.09 11.04 16 11 O -0.45 -11.09 10.69 5.28 0.06 -11.03 16 12 N -0.62 -10.08 3.06 -164.27 -0.50 -10.58 16 13 C 0.10 1.05 5.00 -2.53 -0.01 1.04 16 14 C -0.13 -1.21 7.09 -24.58 -0.17 -1.39 16 15 C -0.12 -1.41 6.43 -24.89 -0.16 -1.57 16 16 C 0.13 2.15 3.03 -66.95 -0.20 1.94 16 17 H 0.07 1.32 8.04 -51.93 -0.42 0.91 16 18 C 0.15 3.26 5.60 -4.04 -0.02 3.24 16 19 N -0.74 -19.96 3.95 -59.91 -0.24 -20.19 16 20 C -0.24 -7.46 10.38 -15.06 -0.16 -7.62 16 21 H 0.08 2.60 8.06 -52.49 -0.42 2.17 16 22 C 0.01 0.31 5.50 -17.43 -0.10 0.21 16 23 N -0.93 -31.98 13.97 55.49 0.78 -31.20 16 24 Si 0.85 24.73 27.38 -169.99 -4.65 20.08 16 25 H -0.29 -8.53 7.11 56.52 0.40 -8.13 16 26 H -0.22 -6.54 5.42 56.52 0.31 -6.24 16 27 H -0.30 -8.90 7.11 56.52 0.40 -8.50 16 28 C 0.17 2.92 6.59 -84.58 -0.56 2.36 16 29 N -0.44 -8.40 8.65 -7.01 -0.06 -8.46 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.08 0.78 8.11 -51.93 -0.42 0.36 16 32 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 36 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 37 H 0.14 1.51 4.61 -52.49 -0.24 1.27 16 38 H 0.07 0.72 6.80 -51.93 -0.35 0.37 16 39 H 0.07 0.64 6.87 -51.93 -0.36 0.29 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.08 0.87 7.85 -51.93 -0.41 0.46 16 44 H 0.03 0.52 8.06 -51.93 -0.42 0.10 16 45 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.37 10.25 4.12 -40.82 -0.17 10.08 16 47 H 0.25 8.34 8.31 -40.82 -0.34 8.00 16 LS Contribution 371.78 15.07 5.60 5.60 Total: -1.00 -41.54 371.78 -10.43 -51.97 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -6.67 Total: 5.67 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -4.75 Total: -1.85 kcal Atomic # 7 Polarization: -70.42 SS G_CDS: -0.03 Total: -70.44 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.06 Total: -11.03 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -4.65 Total: 20.08 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -41.54 -10.43 -51.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723919253.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.247 kcal (2) G-P(sol) polarization free energy of solvation -41.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds