Wall clock time and date at job start Tue Mar 31 2020 22:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39227 * 119.15075 * 2 1 4 4 C 1.36635 * 119.89990 * 179.97438 * 3 2 1 5 5 C 1.40797 * 118.15709 * 0.02562 * 4 3 2 6 6 C 1.40473 * 121.25298 * 180.02562 * 5 4 3 7 7 C 1.36319 * 120.08500 * 180.02562 * 6 5 4 8 8 C 1.38918 * 121.05124 * 359.67724 * 7 6 5 9 9 C 1.38705 * 120.72642 * 0.60388 * 8 7 6 10 10 C 1.47432 * 120.32819 * 179.69589 * 9 8 7 11 11 O 1.21602 * 120.00145 * 205.32413 * 10 9 8 12 12 N 1.34776 * 120.00166 * 25.32525 * 10 9 8 13 13 C 1.47424 * 125.64967 * 4.84502 * 12 10 9 14 14 C 1.54900 * 104.83639 * 155.91454 * 13 12 10 15 15 C 1.55163 * 101.58065 * 37.00996 * 14 13 12 16 16 C 1.47029 * 125.64774 * 184.89442 * 12 10 9 17 17 H 1.09000 * 110.01271 * 300.50167 * 16 12 10 18 18 C 1.52995 * 109.88261 * 61.60160 * 16 12 10 19 19 N 1.46508 * 109.46866 * 282.17175 * 18 16 12 20 20 C 1.36938 * 119.99651 * 166.81763 * 19 18 16 21 21 H 1.07996 * 120.00269 * 349.63809 * 20 19 18 22 22 C 1.38813 * 119.99354 * 169.63870 * 20 19 18 23 23 N 1.31618 * 119.99718 * 199.23438 * 22 20 19 24 24 Si 1.86804 * 120.00226 * 19.23739 * 22 20 19 25 25 H 1.48502 * 109.46753 * 276.13744 * 24 22 20 26 26 H 1.48495 * 109.47194 * 36.13612 * 24 22 20 27 27 H 1.48494 * 109.47061 * 156.14115 * 24 22 20 28 28 C 1.41555 * 118.94505 * 0.02562 * 5 4 3 29 29 N 1.31235 * 119.15608 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.46879 * 275.11431 * 1 2 3 31 31 H 1.08993 * 109.47199 * 35.11312 * 1 2 3 32 32 H 1.08996 * 109.47096 * 155.11836 * 1 2 3 33 33 H 1.08001 * 120.04922 * 359.97438 * 3 2 1 34 34 H 1.08001 * 120.91901 * 179.97438 * 4 3 2 35 35 H 1.07999 * 119.95950 * 359.97438 * 6 5 4 36 36 H 1.08003 * 119.47132 * 179.97438 * 7 6 5 37 37 H 1.07996 * 119.63228 * 180.30583 * 8 7 6 38 38 H 1.09004 * 110.36717 * 37.07185 * 13 12 10 39 39 H 1.09002 * 110.45631 * 274.80595 * 13 12 10 40 40 H 1.08997 * 111.00863 * 278.93806 * 14 13 12 41 41 H 1.08998 * 111.04052 * 155.09480 * 14 13 12 42 42 H 1.08997 * 110.71835 * 206.13552 * 15 14 13 43 43 H 1.08997 * 110.71934 * 82.86363 * 15 14 13 44 44 H 1.08993 * 109.47513 * 162.17202 * 18 16 12 45 45 H 1.08999 * 109.47489 * 42.16974 * 18 16 12 46 46 H 0.97001 * 119.99893 * 346.82127 * 19 18 16 47 47 H 0.97002 * 119.99553 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1853 1.2159 0.0000 4 6 3.5515 1.2338 0.0005 5 6 4.2321 0.0012 0.0005 6 6 5.6356 -0.0563 0.0016 7 6 6.2701 -1.2628 0.0010 8 6 5.5503 -2.4509 0.0061 9 6 4.1633 -2.4393 -0.0007 10 6 3.4081 -3.7055 -0.0020 11 8 2.2814 -3.7410 -0.4579 12 7 3.9666 -4.8238 0.5021 13 6 5.2767 -4.9023 1.1737 14 6 5.1857 -6.1590 2.0748 15 6 4.3532 -7.1202 1.1856 16 6 3.3707 -6.1675 0.4724 17 1 2.4139 -6.1629 0.9945 18 6 3.1705 -6.6160 -0.9766 19 7 1.9840 -5.9596 -1.5314 20 6 1.7534 -5.9890 -2.8809 21 1 2.5207 -6.3453 -3.5522 22 6 0.5334 -5.5608 -3.3859 23 7 0.1566 -5.9251 -4.5932 24 14 -0.5736 -4.4675 -2.3521 25 1 -1.3829 -5.3091 -1.4344 26 1 0.2595 -3.5292 -1.5579 27 1 -1.4774 -3.6954 -3.2420 28 6 3.4788 -1.1973 -0.0006 29 7 2.1464 -1.1461 -0.0005 30 1 -0.3633 0.0916 1.0236 31 1 -0.3633 0.8406 -0.5911 32 1 -0.3633 -0.9322 -0.4324 33 1 1.6322 2.1436 -0.0004 34 1 4.0943 2.1675 0.0001 35 1 6.2128 0.8565 0.0020 36 1 7.3496 -1.2955 0.0014 37 1 6.0764 -3.3940 0.0105 38 1 5.4462 -4.0123 1.7798 39 1 6.0745 -5.0183 0.4401 40 1 4.6629 -5.9359 3.0048 41 1 6.1753 -6.5700 2.2742 42 1 3.8138 -7.8424 1.7985 43 1 4.9922 -7.6273 0.4627 44 1 3.0352 -7.6971 -1.0069 45 1 4.0458 -6.3427 -1.5658 46 1 1.3619 -5.5042 -0.9428 47 1 -0.6958 -5.6255 -4.9463 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723919253.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:05 Heat of formation + Delta-G solvation = 35.479126 kcal Electronic energy + Delta-G solvation = -30328.237453 eV Core-core repulsion = 26476.008172 eV Total energy + Delta-G solvation = -3852.229281 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.06198 -40.89756 -38.41745 -38.03746 -36.42381 -34.50155 -33.62242 -33.07241 -32.59344 -31.09297 -30.41994 -28.89536 -26.85294 -25.41298 -24.75420 -24.00093 -23.41713 -22.65758 -21.92604 -20.36408 -19.61636 -19.16411 -18.22478 -17.61453 -17.32557 -16.94659 -16.60871 -16.16385 -15.83963 -15.71838 -15.42415 -15.11434 -14.79039 -14.70526 -14.50318 -14.34732 -14.09745 -13.92788 -13.82239 -13.78236 -13.60489 -13.39759 -13.16741 -13.00449 -12.87815 -12.69900 -12.35924 -12.30926 -12.12875 -12.00877 -11.82205 -11.75624 -11.52565 -11.46691 -10.84370 -10.78606 -10.12703 -9.67704 -9.58566 -9.22692 -9.11503 -8.08348 -5.28898 -0.76463 -0.18151 0.81074 1.28743 1.32655 1.75080 1.82856 2.06728 2.25639 2.53343 3.11772 3.20014 3.23857 3.44262 3.58741 3.69038 3.70727 3.83321 3.91990 3.96118 4.04293 4.14194 4.19861 4.25456 4.33773 4.35620 4.45462 4.56889 4.60108 4.64520 4.69583 4.74675 4.82314 4.87275 4.93996 5.00014 5.01458 5.03860 5.11135 5.12414 5.16391 5.24901 5.35625 5.39801 5.56153 5.65973 5.73119 5.86775 6.17440 6.67337 7.10763 7.11315 7.48490 7.97483 8.14470 9.11520 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008420 B = 0.005879 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3324.663285 B = 4761.792709 C = 7135.490023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.134 3.866 3 C -0.176 4.176 4 C -0.045 4.045 5 C -0.135 4.135 6 C -0.060 4.060 7 C -0.128 4.128 8 C -0.063 4.063 9 C -0.144 4.144 10 C 0.545 3.455 11 O -0.518 6.518 12 N -0.619 5.619 13 C 0.087 3.913 14 C -0.118 4.118 15 C -0.114 4.114 16 C 0.129 3.871 17 H 0.049 0.951 18 C 0.149 3.851 19 N -0.744 5.744 20 C -0.219 4.219 21 H 0.051 0.949 22 C -0.051 4.051 23 N -0.974 5.974 24 Si 0.920 3.080 25 H -0.292 1.292 26 H -0.234 1.234 27 H -0.306 1.306 28 C 0.133 3.867 29 N -0.506 5.506 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.040 0.960 33 H 0.174 0.826 34 H 0.189 0.811 35 H 0.178 0.822 36 H 0.178 0.822 37 H 0.161 0.839 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.121 0.879 42 H 0.097 0.903 43 H 0.091 0.909 44 H 0.034 0.966 45 H 0.021 0.979 46 H 0.367 0.633 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.098 15.158 20.029 31.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.018 4.018 3 C -0.196 4.196 4 C -0.071 4.071 5 C -0.137 4.137 6 C -0.078 4.078 7 C -0.146 4.146 8 C -0.083 4.083 9 C -0.148 4.148 10 C 0.334 3.666 11 O -0.392 6.392 12 N -0.355 5.355 13 C -0.034 4.034 14 C -0.156 4.156 15 C -0.152 4.152 16 C 0.025 3.975 17 H 0.067 0.933 18 C 0.022 3.978 19 N -0.391 5.391 20 C -0.350 4.350 21 H 0.069 0.931 22 C -0.243 4.243 23 N -0.625 5.625 24 Si 0.749 3.251 25 H -0.219 1.219 26 H -0.157 1.157 27 H -0.233 1.233 28 C 0.010 3.990 29 N -0.216 5.216 30 H 0.114 0.886 31 H 0.125 0.875 32 H 0.059 0.941 33 H 0.191 0.809 34 H 0.206 0.794 35 H 0.195 0.805 36 H 0.195 0.805 37 H 0.179 0.821 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.139 0.861 42 H 0.115 0.885 43 H 0.109 0.891 44 H 0.052 0.948 45 H 0.039 0.961 46 H 0.203 0.797 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 18.100 14.288 19.566 30.242 hybrid contribution -1.321 0.917 -0.411 1.660 sum 16.778 15.205 19.155 29.658 Atomic orbital electron populations 1.20869 0.88424 1.03151 1.04124 1.22142 0.98265 0.88965 0.92394 1.22054 0.95912 0.99010 1.02611 1.21985 0.94291 0.97794 0.93003 1.19194 0.96393 0.93476 1.04650 1.21654 0.91205 1.00647 0.94295 1.21317 1.02395 0.90723 1.00119 1.22236 0.91083 1.01894 0.93044 1.19947 0.94938 0.91290 1.08594 1.18301 0.86366 0.83363 0.78540 1.90904 1.19485 1.84424 1.44437 1.48510 1.21450 1.06471 1.59049 1.22886 0.84228 1.00591 0.95711 1.22809 1.02374 0.93264 0.97119 1.22637 0.96970 0.96683 0.98916 1.21891 0.97661 0.82931 0.95024 0.93317 1.21219 0.88542 0.95238 0.92830 1.42845 1.27467 1.65204 1.03583 1.18920 0.97445 1.34272 0.84397 0.93052 1.25137 0.98279 1.03309 0.97613 1.69980 1.22936 1.49559 1.20047 0.85921 0.78878 0.81700 0.78585 1.21909 1.15700 1.23319 1.18995 0.89339 0.93147 0.97562 1.68021 1.09679 1.30347 1.13520 0.88557 0.87549 0.94126 0.80858 0.79432 0.80477 0.80507 0.82143 0.89392 0.89466 0.90506 0.86113 0.88485 0.89088 0.94813 0.96104 0.79703 0.93782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.04 10.12 71.24 0.72 -2.32 16 2 C 0.13 4.29 6.78 42.89 0.29 4.58 16 3 C -0.18 -3.80 9.66 22.13 0.21 -3.58 16 4 C -0.05 -0.84 9.89 22.52 0.22 -0.62 16 5 C -0.13 -3.32 5.74 -21.29 -0.12 -3.44 16 6 C -0.06 -0.94 9.75 22.37 0.22 -0.72 16 7 C -0.13 -1.97 9.93 21.99 0.22 -1.75 16 8 C -0.06 -1.44 8.04 22.54 0.18 -1.26 16 9 C -0.14 -5.02 5.69 -19.86 -0.11 -5.13 16 10 C 0.55 23.01 7.31 86.67 0.63 23.64 16 11 O -0.52 -27.78 10.69 -4.04 -0.04 -27.82 16 12 N -0.62 -20.49 3.06 -791.89 -2.43 -22.92 16 13 C 0.09 1.69 5.00 86.85 0.43 2.12 16 14 C -0.12 -1.70 7.09 31.99 0.23 -1.48 16 15 C -0.11 -2.33 6.43 31.79 0.20 -2.13 16 16 C 0.13 4.38 3.03 45.34 0.14 4.52 16 17 H 0.05 1.87 8.04 -2.39 -0.02 1.85 16 18 C 0.15 6.56 5.60 86.38 0.48 7.04 16 19 N -0.74 -42.30 3.95 -343.45 -1.36 -43.66 16 20 C -0.22 -14.54 10.38 84.03 0.87 -13.66 16 21 H 0.05 3.62 8.06 -2.91 -0.02 3.60 16 22 C -0.05 -3.52 5.50 84.86 0.47 -3.05 16 23 N -0.97 -69.67 13.97 21.65 0.30 -69.37 16 24 Si 0.92 55.65 27.38 68.60 1.88 57.53 16 25 H -0.29 -17.23 7.11 99.48 0.71 -16.52 16 26 H -0.23 -14.51 5.42 99.48 0.54 -13.97 16 27 H -0.31 -18.30 7.11 99.48 0.71 -17.59 16 28 C 0.13 4.75 6.59 40.62 0.27 5.02 16 29 N -0.51 -20.87 8.65 -176.10 -1.52 -22.39 16 30 H 0.10 2.23 8.14 -2.39 -0.02 2.22 16 31 H 0.11 2.19 8.11 -2.39 -0.02 2.17 16 32 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 34 H 0.19 1.50 8.06 -2.91 -0.02 1.48 16 35 H 0.18 1.11 8.06 -2.91 -0.02 1.09 16 36 H 0.18 1.11 8.06 -2.91 -0.02 1.09 16 37 H 0.16 2.91 4.61 -2.91 -0.01 2.89 16 38 H 0.09 1.48 6.80 -2.38 -0.02 1.46 16 39 H 0.09 1.36 6.87 -2.39 -0.02 1.35 16 40 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.10 1.71 8.14 -2.39 -0.02 1.70 16 43 H 0.09 1.71 7.85 -2.39 -0.02 1.69 16 44 H 0.03 1.44 8.06 -2.39 -0.02 1.42 16 45 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.37 21.56 4.12 -92.71 -0.38 21.18 16 47 H 0.25 17.34 8.31 -92.71 -0.77 16.57 16 Total: -1.00 -103.44 371.78 2.83 -100.61 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 0.44 Total: 20.24 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 5.56 Total: 7.78 kcal Atomic # 7 Polarization: -153.33 SS G_CDS: -5.01 Total: -158.34 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -0.04 Total: -27.82 kcal Atomic # 14 Polarization: 55.65 SS G_CDS: 1.88 Total: 57.53 kcal Total: -103.44 2.83 -100.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723919253.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.088 kcal (2) G-P(sol) polarization free energy of solvation -103.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds