Wall clock time and date at job start Tue Mar 31 2020 22:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 110.64240 * 2 1 4 4 C 1.34780 * 119.99883 * 300.69891 * 3 2 1 5 5 O 1.21283 * 119.99855 * 0.02562 * 4 3 2 6 6 C 1.50694 * 119.99910 * 179.97438 * 4 3 2 7 7 C 1.50700 * 109.47174 * 180.02562 * 6 4 3 8 8 C 1.36209 * 120.66929 * 264.98061 * 7 6 4 9 9 N 1.32574 * 121.87440 * 180.02562 * 8 7 6 10 10 C 1.31263 * 122.77965 * 359.97068 * 9 8 7 11 11 C 1.40390 * 119.88180 * 0.02562 * 10 9 8 12 12 C 1.40386 * 122.08118 * 180.02562 * 11 10 9 13 13 C 1.36173 * 119.51144 * 179.97438 * 12 11 10 14 14 C 1.39377 * 121.09344 * 0.02562 * 13 12 11 15 15 C 1.36215 * 121.02159 * 359.97438 * 14 13 12 16 16 C 1.40236 * 119.47954 * 0.02562 * 15 14 13 17 17 C 1.55158 * 110.72014 * 123.14273 * 2 1 3 18 18 C 1.55381 * 101.36729 * 153.94224 * 17 2 1 19 19 N 1.47424 * 104.87427 * 323.01888 * 18 17 2 20 20 C 1.36937 * 125.64582 * 204.09366 * 19 18 17 21 21 H 1.08010 * 119.99976 * 180.02562 * 20 19 18 22 22 C 1.38807 * 120.00435 * 0.04126 * 20 19 18 23 23 N 1.31620 * 119.99837 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00296 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47301 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47189 * 120.00139 * 24 22 20 27 27 H 1.48503 * 109.47062 * 239.99826 * 24 22 20 28 28 C 1.47015 * 108.70270 * 24.12907 * 19 18 17 29 29 H 1.08999 * 109.47141 * 59.29907 * 1 2 3 30 30 H 1.09000 * 109.47522 * 179.30470 * 1 2 3 31 31 H 1.09005 * 109.46783 * 299.29753 * 1 2 3 32 32 H 0.96999 * 120.00330 * 120.70466 * 3 2 1 33 33 H 1.09000 * 109.47433 * 60.00727 * 6 4 3 34 34 H 1.08997 * 109.47230 * 300.00389 * 6 4 3 35 35 H 1.07995 * 119.05946 * 0.02562 * 8 7 6 36 36 H 1.08005 * 120.06075 * 179.97438 * 10 9 8 37 37 H 1.08000 * 120.24520 * 359.97438 * 12 11 10 38 38 H 1.08002 * 119.45218 * 180.02562 * 13 12 11 39 39 H 1.08000 * 119.48802 * 180.27578 * 14 13 12 40 40 H 1.08001 * 120.25367 * 180.02562 * 15 14 13 41 41 H 1.09004 * 111.00128 * 272.11492 * 17 2 1 42 42 H 1.09000 * 111.00195 * 35.96324 * 17 2 1 43 43 H 1.08994 * 110.34419 * 204.16382 * 18 17 2 44 44 H 1.09005 * 110.35017 * 81.86680 * 18 17 2 45 45 H 0.96997 * 120.00607 * 180.02562 * 23 22 20 46 46 H 1.09008 * 109.88586 * 239.52421 * 28 19 18 47 47 H 1.09003 * 109.88394 * 118.36480 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0465 1.3709 0.0000 4 6 1.7264 2.2116 -1.0037 5 8 1.0104 1.8333 -1.9066 6 6 2.2572 3.6220 -1.0034 7 6 1.7551 4.3479 -2.2248 8 6 2.5131 4.4136 -3.3546 9 7 2.0952 5.0462 -4.4422 10 6 0.9315 5.6495 -4.5105 11 6 0.0730 5.6410 -3.3997 12 6 -1.1815 6.2707 -3.4221 13 6 -1.9726 6.2295 -2.3145 14 6 -1.5575 5.5724 -1.1575 15 6 -0.3470 4.9505 -1.0993 16 6 0.4946 4.9722 -2.2208 17 6 2.0790 -0.7934 1.2151 18 6 3.4673 -1.2456 0.6837 19 7 3.2470 -1.5462 -0.7426 20 6 4.0076 -2.3902 -1.5071 21 1 3.7632 -2.5439 -2.5479 22 6 5.0925 -3.0483 -0.9445 23 7 5.3899 -2.8615 0.3240 24 14 6.1296 -4.2000 -1.9871 25 1 5.5901 -4.2367 -3.3701 26 1 7.5323 -3.7134 -2.0163 27 1 6.0914 -5.5652 -1.4039 28 6 2.0760 -0.7892 -1.2085 29 1 -0.3633 0.5247 -0.8836 30 1 -0.3634 -1.0276 -0.0125 31 1 -0.3633 0.5029 0.8963 32 1 2.6189 1.6736 0.7222 33 1 3.3469 3.6002 -1.0157 34 1 1.9143 4.1391 -0.1072 35 1 3.4820 3.9369 -3.3646 36 1 0.6352 6.1523 -5.4193 37 1 -1.5167 6.7841 -4.3111 38 1 -2.9377 6.7139 -2.3329 39 1 -2.2077 5.5520 -0.2954 40 1 -0.0380 4.4447 -0.1965 41 1 2.1821 -0.1490 2.0882 42 1 1.4468 -1.6529 1.4383 43 1 3.8030 -2.1379 1.2120 44 1 4.1955 -0.4420 0.7939 45 1 6.1483 -3.3211 0.7172 46 1 1.3139 -1.4754 -1.5780 47 1 2.3711 -0.0993 -1.9991 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724161541.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:30 Heat of formation + Delta-G solvation = 47.354325 kcal Electronic energy + Delta-G solvation = -29370.830516 eV Core-core repulsion = 25519.116183 eV Total energy + Delta-G solvation = -3851.714334 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.14959 -39.78737 -37.56294 -37.27001 -34.26313 -33.95557 -31.97303 -31.34604 -30.55978 -29.92014 -28.67755 -27.78524 -25.67418 -24.18264 -23.72195 -23.59274 -22.02405 -20.54943 -20.18634 -19.00723 -18.11759 -17.73435 -17.18853 -16.62483 -16.50524 -15.61389 -15.19285 -14.75352 -14.70929 -14.55272 -14.37531 -13.88905 -13.87612 -13.66723 -13.33671 -13.07373 -12.89983 -12.76542 -12.41735 -12.26533 -12.18020 -11.99586 -11.74500 -11.69990 -11.56494 -11.22120 -10.93254 -10.86905 -10.42361 -10.35610 -10.21881 -10.05290 -9.92700 -9.66096 -9.56027 -9.27353 -9.20826 -8.66448 -8.62163 -8.15272 -6.80983 -5.65191 -3.05435 0.20857 0.78264 1.75501 2.87418 2.91843 3.40422 3.43276 3.46860 3.49365 3.98975 4.20007 4.40264 4.50358 4.54422 4.58004 4.70712 4.79790 4.94769 4.96974 5.02374 5.12758 5.24177 5.36511 5.39418 5.46506 5.50860 5.56564 5.59276 5.71065 5.73502 5.85779 5.90955 6.02669 6.15324 6.18471 6.22073 6.28989 6.34560 6.44591 6.48991 6.51128 6.66686 6.69636 6.83343 7.14213 7.44116 7.64357 7.79278 7.86020 7.89659 8.35281 8.52318 9.23647 9.84206 10.48865 11.39212 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017193 B = 0.002856 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.158051 B = 9800.401343 C =10792.020490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.160 3.840 3 N -0.708 5.708 4 C 0.515 3.485 5 O -0.527 6.527 6 C -0.103 4.103 7 C -0.092 4.092 8 C 0.089 3.911 9 N -0.483 5.483 10 C 0.139 3.861 11 C -0.112 4.112 12 C -0.087 4.087 13 C -0.123 4.123 14 C -0.101 4.101 15 C -0.105 4.105 16 C -0.007 4.007 17 C -0.147 4.147 18 C 0.154 3.846 19 N -0.604 5.604 20 C -0.216 4.216 21 H 0.077 0.923 22 C -0.013 4.013 23 N -0.925 5.925 24 Si 0.914 3.086 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.290 1.290 28 C 0.138 3.862 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.397 0.603 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.153 0.847 36 H 0.161 0.839 37 H 0.132 0.868 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.108 0.892 44 H 0.010 0.990 45 H 0.251 0.749 46 H 0.029 0.971 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.816 20.251 0.916 23.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.074 3.926 3 N -0.359 5.359 4 C 0.301 3.699 5 O -0.403 6.403 6 C -0.143 4.143 7 C -0.094 4.094 8 C -0.054 4.054 9 N -0.189 5.189 10 C -0.033 4.033 11 C -0.114 4.114 12 C -0.107 4.107 13 C -0.141 4.141 14 C -0.120 4.120 15 C -0.123 4.123 16 C -0.012 4.012 17 C -0.186 4.186 18 C 0.029 3.971 19 N -0.330 5.330 20 C -0.344 4.344 21 H 0.095 0.905 22 C -0.208 4.208 23 N -0.574 5.574 24 Si 0.744 3.256 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C 0.011 3.989 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.231 0.769 33 H 0.126 0.874 34 H 0.120 0.880 35 H 0.170 0.830 36 H 0.178 0.822 37 H 0.149 0.851 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.145 0.855 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.125 0.875 44 H 0.028 0.972 45 H 0.061 0.939 46 H 0.046 0.954 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -12.485 19.742 -0.402 23.362 hybrid contribution 0.352 -0.500 0.605 0.860 sum -12.133 19.242 0.204 22.748 Atomic orbital electron populations 1.22044 0.94362 1.02230 1.02194 1.21334 0.92903 0.80414 0.97920 1.45983 1.51933 1.12441 1.25590 1.20231 0.81022 0.86535 0.82149 1.90701 1.36923 1.77327 1.35397 1.20632 1.03107 0.93394 0.97214 1.19999 0.94336 0.98382 0.96669 1.22071 1.00017 0.95705 0.87590 1.67421 1.16274 1.07933 1.27302 1.23157 0.88827 0.94604 0.96700 1.19004 0.96631 1.00680 0.95093 1.20961 0.92735 0.98242 0.98783 1.20895 1.00018 0.99890 0.93296 1.20959 0.96136 0.96664 0.98241 1.20947 0.94415 0.99247 0.97712 1.17949 0.93765 0.95725 0.93790 1.23438 1.01312 0.98827 0.95034 1.22009 0.89255 1.00592 0.85268 1.44508 1.30517 1.50537 1.07455 1.19145 1.05851 1.16498 0.92951 0.90526 1.24756 0.98800 1.00792 0.96480 1.69780 1.30007 1.46667 1.10974 0.85997 0.80011 0.80355 0.79196 1.20527 1.21807 1.21758 1.21587 0.90209 0.93125 0.93944 0.90875 0.91869 0.93281 0.76869 0.87364 0.87964 0.83019 0.82153 0.85060 0.85729 0.85705 0.85478 0.91897 0.90602 0.87483 0.97181 0.93870 0.95352 0.95007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 8.41 37.16 0.31 -2.04 16 2 C 0.16 2.81 0.80 -129.99 -0.10 2.70 16 3 N -0.71 -10.55 5.15 -45.91 -0.24 -10.79 16 4 C 0.52 7.79 7.04 -10.99 -0.08 7.71 16 5 O -0.53 -9.99 12.98 5.55 0.07 -9.92 16 6 C -0.10 -1.15 5.31 -29.04 -0.15 -1.31 16 7 C -0.09 -1.19 4.40 -104.44 -0.46 -1.64 16 8 C 0.09 1.23 10.72 -17.96 -0.19 1.04 16 9 N -0.48 -6.73 10.30 -13.16 -0.14 -6.86 16 10 C 0.14 1.60 11.05 -16.99 -0.19 1.41 16 11 C -0.11 -1.29 5.74 -106.86 -0.61 -1.91 16 12 C -0.09 -0.77 9.81 -39.52 -0.39 -1.16 16 13 C -0.12 -1.01 9.94 -39.90 -0.40 -1.41 16 14 C -0.10 -0.90 9.95 -39.89 -0.40 -1.30 16 15 C -0.11 -1.13 9.33 -39.56 -0.37 -1.50 16 16 C -0.01 -0.09 5.75 -106.82 -0.61 -0.70 16 17 C -0.15 -2.61 6.11 -24.33 -0.15 -2.76 16 18 C 0.15 3.60 5.88 -2.27 -0.01 3.58 16 19 N -0.60 -15.65 3.40 -169.78 -0.58 -16.22 16 20 C -0.22 -6.16 10.27 -15.06 -0.15 -6.31 16 21 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 22 C -0.01 -0.38 5.49 -17.43 -0.10 -0.48 16 23 N -0.92 -26.76 10.09 55.49 0.56 -26.20 16 24 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 C 0.14 3.10 6.16 -3.07 -0.02 3.08 16 29 H 0.07 1.26 6.20 -51.93 -0.32 0.94 16 30 H 0.06 0.97 8.12 -51.93 -0.42 0.55 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.40 4.92 8.48 -40.82 -0.35 4.58 16 33 H 0.11 1.05 8.06 -51.93 -0.42 0.63 16 34 H 0.10 0.85 6.83 -51.93 -0.35 0.50 16 35 H 0.15 1.92 8.05 -52.49 -0.42 1.50 16 36 H 0.16 1.28 8.06 -52.48 -0.42 0.86 16 37 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 38 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 39 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.13 1.21 6.65 -52.49 -0.35 0.86 16 41 H 0.06 0.93 8.06 -51.93 -0.42 0.51 16 42 H 0.08 1.34 8.05 -51.93 -0.42 0.93 16 43 H 0.11 2.85 5.87 -51.93 -0.30 2.54 16 44 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 46 H 0.03 0.66 7.80 -51.92 -0.41 0.25 16 47 H 0.03 0.78 6.68 -51.93 -0.35 0.43 16 LS Contribution 378.45 15.07 5.70 5.70 Total: -1.00 -34.81 378.45 -10.32 -45.13 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -6.61 Total: 4.76 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -4.07 Total: -2.99 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: -0.39 Total: -60.07 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.07 Total: -9.92 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.81 -10.32 -45.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724161541.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.485 kcal (2) G-P(sol) polarization free energy of solvation -34.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds