Wall clock time and date at job start Tue Mar 31 2020 22:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 110.64240 * 2 1 4 4 C 1.34780 * 119.99883 * 300.69891 * 3 2 1 5 5 O 1.21283 * 119.99855 * 0.02562 * 4 3 2 6 6 C 1.50694 * 119.99910 * 179.97438 * 4 3 2 7 7 C 1.50700 * 109.47174 * 180.02562 * 6 4 3 8 8 C 1.36209 * 120.66929 * 264.98061 * 7 6 4 9 9 N 1.32574 * 121.87440 * 180.02562 * 8 7 6 10 10 C 1.31263 * 122.77965 * 359.97068 * 9 8 7 11 11 C 1.40390 * 119.88180 * 0.02562 * 10 9 8 12 12 C 1.40386 * 122.08118 * 180.02562 * 11 10 9 13 13 C 1.36173 * 119.51144 * 179.97438 * 12 11 10 14 14 C 1.39377 * 121.09344 * 0.02562 * 13 12 11 15 15 C 1.36215 * 121.02159 * 359.97438 * 14 13 12 16 16 C 1.40236 * 119.47954 * 0.02562 * 15 14 13 17 17 C 1.55158 * 110.72014 * 123.14273 * 2 1 3 18 18 C 1.55381 * 101.36729 * 153.94224 * 17 2 1 19 19 N 1.47424 * 104.87427 * 323.01888 * 18 17 2 20 20 C 1.36937 * 125.64582 * 204.09366 * 19 18 17 21 21 H 1.08010 * 119.99976 * 180.02562 * 20 19 18 22 22 C 1.38807 * 120.00435 * 0.04126 * 20 19 18 23 23 N 1.31620 * 119.99837 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00296 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47301 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47189 * 120.00139 * 24 22 20 27 27 H 1.48503 * 109.47062 * 239.99826 * 24 22 20 28 28 C 1.47015 * 108.70270 * 24.12907 * 19 18 17 29 29 H 1.08999 * 109.47141 * 59.29907 * 1 2 3 30 30 H 1.09000 * 109.47522 * 179.30470 * 1 2 3 31 31 H 1.09005 * 109.46783 * 299.29753 * 1 2 3 32 32 H 0.96999 * 120.00330 * 120.70466 * 3 2 1 33 33 H 1.09000 * 109.47433 * 60.00727 * 6 4 3 34 34 H 1.08997 * 109.47230 * 300.00389 * 6 4 3 35 35 H 1.07995 * 119.05946 * 0.02562 * 8 7 6 36 36 H 1.08005 * 120.06075 * 179.97438 * 10 9 8 37 37 H 1.08000 * 120.24520 * 359.97438 * 12 11 10 38 38 H 1.08002 * 119.45218 * 180.02562 * 13 12 11 39 39 H 1.08000 * 119.48802 * 180.27578 * 14 13 12 40 40 H 1.08001 * 120.25367 * 180.02562 * 15 14 13 41 41 H 1.09004 * 111.00128 * 272.11492 * 17 2 1 42 42 H 1.09000 * 111.00195 * 35.96324 * 17 2 1 43 43 H 1.08994 * 110.34419 * 204.16382 * 18 17 2 44 44 H 1.09005 * 110.35017 * 81.86680 * 18 17 2 45 45 H 0.96997 * 120.00607 * 180.02562 * 23 22 20 46 46 H 1.09008 * 109.88586 * 239.52421 * 28 19 18 47 47 H 1.09003 * 109.88394 * 118.36480 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0465 1.3709 0.0000 4 6 1.7264 2.2116 -1.0037 5 8 1.0104 1.8333 -1.9066 6 6 2.2572 3.6220 -1.0034 7 6 1.7551 4.3479 -2.2248 8 6 2.5131 4.4136 -3.3546 9 7 2.0952 5.0462 -4.4422 10 6 0.9315 5.6495 -4.5105 11 6 0.0730 5.6410 -3.3997 12 6 -1.1815 6.2707 -3.4221 13 6 -1.9726 6.2295 -2.3145 14 6 -1.5575 5.5724 -1.1575 15 6 -0.3470 4.9505 -1.0993 16 6 0.4946 4.9722 -2.2208 17 6 2.0790 -0.7934 1.2151 18 6 3.4673 -1.2456 0.6837 19 7 3.2470 -1.5462 -0.7426 20 6 4.0076 -2.3902 -1.5071 21 1 3.7632 -2.5439 -2.5479 22 6 5.0925 -3.0483 -0.9445 23 7 5.3899 -2.8615 0.3240 24 14 6.1296 -4.2000 -1.9871 25 1 5.5901 -4.2367 -3.3701 26 1 7.5323 -3.7134 -2.0163 27 1 6.0914 -5.5652 -1.4039 28 6 2.0760 -0.7892 -1.2085 29 1 -0.3633 0.5247 -0.8836 30 1 -0.3634 -1.0276 -0.0125 31 1 -0.3633 0.5029 0.8963 32 1 2.6189 1.6736 0.7222 33 1 3.3469 3.6002 -1.0157 34 1 1.9143 4.1391 -0.1072 35 1 3.4820 3.9369 -3.3646 36 1 0.6352 6.1523 -5.4193 37 1 -1.5167 6.7841 -4.3111 38 1 -2.9377 6.7139 -2.3329 39 1 -2.2077 5.5520 -0.2954 40 1 -0.0380 4.4447 -0.1965 41 1 2.1821 -0.1490 2.0882 42 1 1.4468 -1.6529 1.4383 43 1 3.8030 -2.1379 1.2120 44 1 4.1955 -0.4420 0.7939 45 1 6.1483 -3.3211 0.7172 46 1 1.3139 -1.4754 -1.5780 47 1 2.3711 -0.0993 -1.9991 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724161541.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:29 Heat of formation + Delta-G solvation = 25.165733 kcal Electronic energy + Delta-G solvation = -29371.792686 eV Core-core repulsion = 25519.116183 eV Total energy + Delta-G solvation = -3852.676503 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.02515 -41.06867 -38.92228 -38.21821 -35.76433 -35.10312 -33.64973 -32.16081 -31.86417 -31.05905 -30.34487 -28.74829 -27.56307 -25.47749 -24.88331 -24.48867 -23.03767 -22.24517 -21.43644 -20.42874 -19.01746 -18.89079 -18.51933 -18.00032 -17.40279 -17.07948 -16.71286 -16.17538 -15.71057 -15.59868 -15.54103 -15.29586 -15.02478 -14.66709 -14.47747 -14.30406 -14.26407 -14.05433 -13.74825 -13.55271 -13.30986 -13.20999 -13.06073 -12.91568 -12.80998 -12.76094 -12.62963 -12.09825 -12.04284 -11.95952 -11.92840 -11.70314 -11.54023 -11.07713 -10.77577 -10.57287 -10.44779 -10.00033 -9.98785 -8.96496 -8.90165 -7.81035 -5.24364 -0.58067 -0.02852 0.96335 1.43602 1.43793 1.54629 1.70324 2.08700 2.31682 2.46424 3.13500 3.28268 3.37900 3.58250 3.61002 3.70156 3.77261 3.81553 3.94864 3.98695 4.01993 4.12564 4.17020 4.26891 4.35510 4.40332 4.57360 4.62058 4.66431 4.69156 4.81698 4.82396 4.87317 4.90848 4.96282 5.00678 5.09601 5.13182 5.16606 5.32924 5.40834 5.49874 5.53332 5.61303 5.68442 5.70744 5.80074 5.96872 6.29818 6.66622 6.99787 7.09774 7.35676 7.75416 8.38579 9.20220 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017193 B = 0.002856 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.158051 B = 9800.401343 C =10792.020490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.172 3.828 3 N -0.703 5.703 4 C 0.515 3.485 5 O -0.568 6.568 6 C -0.093 4.093 7 C -0.102 4.102 8 C 0.061 3.939 9 N -0.516 5.516 10 C 0.136 3.864 11 C -0.132 4.132 12 C -0.089 4.089 13 C -0.123 4.123 14 C -0.096 4.096 15 C -0.126 4.126 16 C -0.030 4.030 17 C -0.127 4.127 18 C 0.155 3.845 19 N -0.623 5.623 20 C -0.242 4.242 21 H 0.066 0.934 22 C -0.059 4.059 23 N -0.942 5.942 24 Si 0.977 3.023 25 H -0.275 1.275 26 H -0.289 1.289 27 H -0.286 1.286 28 C 0.138 3.862 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.412 0.588 33 H 0.121 0.879 34 H 0.137 0.863 35 H 0.147 0.853 36 H 0.192 0.808 37 H 0.162 0.838 38 H 0.158 0.842 39 H 0.152 0.848 40 H 0.136 0.864 41 H 0.105 0.895 42 H 0.080 0.920 43 H 0.075 0.925 44 H -0.004 1.004 45 H 0.249 0.751 46 H 0.015 0.985 47 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.865 22.007 2.225 26.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.085 3.915 3 N -0.355 5.355 4 C 0.302 3.698 5 O -0.447 6.447 6 C -0.133 4.133 7 C -0.104 4.104 8 C -0.081 4.081 9 N -0.223 5.223 10 C -0.035 4.035 11 C -0.134 4.134 12 C -0.109 4.109 13 C -0.140 4.140 14 C -0.115 4.115 15 C -0.144 4.144 16 C -0.035 4.035 17 C -0.165 4.165 18 C 0.031 3.969 19 N -0.349 5.349 20 C -0.371 4.371 21 H 0.084 0.916 22 C -0.252 4.252 23 N -0.592 5.592 24 Si 0.805 3.195 25 H -0.200 1.200 26 H -0.216 1.216 27 H -0.212 1.212 28 C 0.011 3.989 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.249 0.751 33 H 0.140 0.860 34 H 0.155 0.845 35 H 0.164 0.836 36 H 0.208 0.792 37 H 0.179 0.821 38 H 0.175 0.825 39 H 0.170 0.830 40 H 0.154 0.846 41 H 0.123 0.877 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.014 0.986 45 H 0.059 0.941 46 H 0.033 0.967 47 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -14.529 21.520 0.939 25.982 hybrid contribution 0.903 -0.995 0.148 1.352 sum -13.626 20.525 1.086 24.660 Atomic orbital electron populations 1.21945 0.92360 1.02522 1.02952 1.21098 0.94153 0.81146 0.95064 1.45886 1.52096 1.11257 1.26253 1.20847 0.80068 0.87727 0.81133 1.90687 1.38842 1.78344 1.36839 1.20635 1.03710 0.90776 0.98177 1.20138 0.94801 0.98715 0.96771 1.22146 1.00531 0.96978 0.88482 1.67388 1.17812 1.09397 1.27752 1.23715 0.88082 0.93767 0.97965 1.19329 0.97904 1.01254 0.94864 1.21343 0.91527 0.97649 1.00355 1.21346 1.01077 0.99031 0.92569 1.21385 0.95586 0.95075 0.99430 1.21132 0.95190 1.00497 0.97614 1.18263 0.93968 0.96204 0.95020 1.23283 0.97368 0.99696 0.96200 1.21843 0.92368 0.98733 0.83978 1.44783 1.31056 1.50514 1.08568 1.19370 1.06955 1.17666 0.93128 0.91592 1.25521 0.99778 1.02177 0.97754 1.70007 1.30084 1.47098 1.11977 0.85038 0.78165 0.78363 0.77924 1.20024 1.21575 1.21213 1.21657 0.88904 0.92598 0.95693 0.92540 0.91795 0.90048 0.75122 0.86045 0.84544 0.83582 0.79154 0.82075 0.82482 0.83032 0.84643 0.87691 0.90111 0.90723 0.98648 0.94111 0.96715 0.97722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.12 8.41 71.98 0.61 -3.51 16 2 C 0.17 5.87 0.80 4.79 0.00 5.88 16 3 N -0.70 -20.01 5.15 -417.56 -2.15 -22.16 16 4 C 0.51 15.34 7.04 87.65 0.62 15.96 16 5 O -0.57 -21.95 12.98 -3.04 -0.04 -21.99 16 6 C -0.09 -2.01 5.31 29.10 0.15 -1.86 16 7 C -0.10 -2.67 4.40 -19.75 -0.09 -2.76 16 8 C 0.06 1.78 10.72 84.11 0.90 2.69 16 9 N -0.52 -14.99 10.30 -195.55 -2.01 -17.01 16 10 C 0.14 3.11 11.05 85.30 0.94 4.06 16 11 C -0.13 -2.92 5.74 -21.32 -0.12 -3.04 16 12 C -0.09 -1.35 9.81 22.31 0.22 -1.13 16 13 C -0.12 -1.58 9.94 22.06 0.22 -1.36 16 14 C -0.10 -1.41 9.95 22.07 0.22 -1.19 16 15 C -0.13 -2.47 9.33 22.28 0.21 -2.27 16 16 C -0.03 -0.72 5.75 -21.29 -0.12 -0.84 16 17 C -0.13 -4.27 6.11 32.15 0.20 -4.08 16 18 C 0.16 7.35 5.88 87.02 0.51 7.86 16 19 N -0.62 -33.26 3.40 -691.05 -2.35 -35.61 16 20 C -0.24 -14.27 10.27 84.03 0.86 -13.40 16 21 H 0.07 3.90 7.83 -2.91 -0.02 3.87 16 22 C -0.06 -3.43 5.49 84.86 0.47 -2.96 16 23 N -0.94 -55.54 10.09 21.65 0.22 -55.32 16 24 Si 0.98 46.85 29.55 68.60 2.03 48.88 16 25 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 26 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 27 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 28 C 0.14 6.38 6.16 86.73 0.53 6.91 16 29 H 0.06 1.89 6.20 -2.39 -0.01 1.88 16 30 H 0.06 1.86 8.12 -2.39 -0.02 1.84 16 31 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.41 9.27 8.48 -92.71 -0.79 8.49 16 33 H 0.12 2.28 8.06 -2.39 -0.02 2.26 16 34 H 0.14 1.96 6.83 -2.39 -0.02 1.94 16 35 H 0.15 4.09 8.05 -2.91 -0.02 4.06 16 36 H 0.19 2.82 8.06 -2.91 -0.02 2.80 16 37 H 0.16 1.34 8.06 -2.91 -0.02 1.31 16 38 H 0.16 0.99 8.06 -2.91 -0.02 0.97 16 39 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 40 H 0.14 2.27 6.65 -2.91 -0.02 2.25 16 41 H 0.10 2.69 8.06 -2.38 -0.02 2.67 16 42 H 0.08 2.69 8.05 -2.39 -0.02 2.67 16 43 H 0.07 4.05 5.87 -2.39 -0.01 4.04 16 44 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 45 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 46 H 0.01 0.72 7.80 -2.38 -0.02 0.70 16 47 H 0.00 0.25 6.68 -2.39 -0.02 0.23 16 Total: -1.00 -80.01 378.45 2.24 -77.77 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: 0.21 Total: 20.48 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: 6.33 Total: 4.95 kcal Atomic # 7 Polarization: -123.80 SS G_CDS: -6.29 Total: -130.09 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.04 Total: -21.99 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -80.01 2.24 -77.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724161541.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.940 kcal (2) G-P(sol) polarization free energy of solvation -80.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds