Wall clock time and date at job start Tue Mar 31 2020 22:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 110.65774 * 2 1 4 4 N 1.46500 * 109.47178 * 56.80241 * 3 2 1 5 5 C 1.36943 * 119.99402 * 180.02562 * 4 3 2 6 6 H 1.07997 * 119.99976 * 0.02562 * 5 4 3 7 7 C 1.38808 * 119.99524 * 179.97438 * 5 4 3 8 8 N 1.31624 * 120.00305 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99943 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47164 * 60.00083 * 9 7 5 11 11 H 1.48501 * 109.47112 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47179 * 300.00043 * 9 7 5 13 13 C 1.54608 * 110.74055 * 236.80143 * 2 1 3 14 14 C 1.54000 * 105.04920 * 263.51292 * 13 2 1 15 15 N 1.47492 * 107.08268 * 1.30577 * 14 13 2 16 16 C 1.34777 * 127.03361 * 154.51438 * 15 14 13 17 17 O 1.21601 * 119.99584 * 185.25203 * 16 15 14 18 18 C 1.47450 * 119.99741 * 5.25172 * 16 15 14 19 19 C 1.38853 * 120.46356 * 38.26639 * 18 16 15 20 20 C 1.38898 * 120.67406 * 180.02562 * 19 18 16 21 21 C 1.36373 * 121.27690 * 0.03549 * 20 19 18 22 22 C 1.40407 * 119.98527 * 359.97438 * 21 20 19 23 23 C 1.40465 * 121.95909 * 179.97438 * 22 21 20 24 24 N 1.31270 * 119.88201 * 180.02562 * 23 22 21 25 25 C 1.32553 * 122.73761 * 359.97438 * 24 23 22 26 26 C 1.36335 * 121.81708 * 0.02562 * 25 24 23 27 27 C 1.40293 * 118.70005 * 359.97438 * 26 25 24 28 28 C 1.48120 * 105.93108 * 334.78193 * 15 14 13 29 29 H 1.09000 * 109.46840 * 183.19635 * 1 2 3 30 30 H 1.09000 * 109.47012 * 303.19812 * 1 2 3 31 31 H 1.08996 * 109.46644 * 63.19790 * 1 2 3 32 32 H 1.08999 * 109.46700 * 176.80888 * 3 2 1 33 33 H 1.09003 * 109.46817 * 296.80260 * 3 2 1 34 34 H 0.96993 * 120.00464 * 0.02562 * 4 3 2 35 35 H 0.97000 * 120.00075 * 179.97438 * 8 7 5 36 36 H 1.09003 * 110.32409 * 144.62023 * 13 2 1 37 37 H 1.09000 * 110.41826 * 22.45335 * 13 2 1 38 38 H 1.09001 * 109.91846 * 241.94984 * 14 13 2 39 39 H 1.08997 * 109.91743 * 120.66793 * 14 13 2 40 40 H 1.08001 * 119.66166 * 0.02562 * 19 18 16 41 41 H 1.08000 * 119.36742 * 180.02562 * 20 19 18 42 42 H 1.07996 * 120.01100 * 180.02562 * 21 20 19 43 43 H 1.08001 * 120.05382 * 0.04447 * 23 22 21 44 44 H 1.07998 * 119.09090 * 180.27839 * 25 24 23 45 45 H 1.07997 * 120.64831 * 179.97438 * 26 25 24 46 46 H 1.08997 * 110.66377 * 157.50775 * 28 15 14 47 47 H 1.09001 * 110.65529 * 280.62149 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0698 1.4317 0.0000 4 7 1.5344 2.1554 1.1558 5 6 1.8809 3.4637 1.3648 6 1 2.5484 3.9620 0.6773 7 6 1.3733 4.1496 2.4595 8 7 0.5593 3.5425 3.2970 9 14 1.8452 5.9344 2.7443 10 1 1.4184 6.7512 1.5799 11 1 1.1753 6.4338 3.9720 12 1 3.3176 6.0371 2.9079 13 6 2.0775 -0.7917 -1.2099 14 6 2.3763 -2.2003 -0.6639 15 7 1.9871 -2.2051 0.7587 16 6 1.6220 -3.2721 1.4968 17 8 1.2331 -3.1172 2.6385 18 6 1.6943 -4.6271 0.9199 19 6 2.7452 -4.9813 0.0843 20 6 2.8173 -6.2564 -0.4620 21 6 1.8641 -7.1950 -0.1973 22 6 0.7835 -6.8804 0.6422 23 6 -0.2216 -7.8147 0.9422 24 7 -1.2141 -7.4767 1.7320 25 6 -1.3202 -6.2719 2.2745 26 6 -0.3962 -5.2962 2.0445 27 6 0.6940 -5.5840 1.2097 28 6 2.0732 -0.7965 1.2085 29 1 -0.3633 -1.0261 0.0573 30 1 -0.3633 0.5627 0.8599 31 1 -0.3632 0.4634 -0.9173 32 1 3.1581 1.4096 0.0572 33 1 1.7643 1.9351 -0.9173 34 1 0.9347 1.7080 1.7729 35 1 0.2049 4.0217 4.0623 36 1 2.9910 -0.3287 -1.5832 37 1 1.3293 -0.8430 -2.0009 38 1 3.4403 -2.4173 -0.7584 39 1 1.7937 -2.9417 -1.2107 40 1 3.5143 -4.2580 -0.1432 41 1 3.6443 -6.5094 -1.1089 42 1 1.9406 -8.1803 -0.6327 43 1 -0.1775 -8.8095 0.5240 44 1 -2.1596 -6.0586 2.9197 45 1 -0.5015 -4.3208 2.4960 46 1 1.4488 -0.6344 2.0871 47 1 3.1076 -0.5212 1.4144 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724266539.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:39 Heat of formation + Delta-G solvation = 39.801923 kcal Electronic energy + Delta-G solvation = -29075.868506 eV Core-core repulsion = 25223.826675 eV Total energy + Delta-G solvation = -3852.041831 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.33785 -40.01752 -38.12449 -37.36059 -34.88631 -33.24656 -32.74772 -31.48592 -30.56507 -29.99691 -29.25317 -26.72767 -25.75773 -24.76971 -23.82916 -23.73987 -22.80598 -22.01024 -19.74339 -18.89160 -18.44109 -17.64504 -17.02410 -16.90922 -16.50679 -15.93208 -15.65998 -15.03985 -14.67728 -14.51247 -14.42324 -14.30945 -13.98488 -13.71302 -13.68006 -13.43440 -13.07163 -12.93847 -12.58240 -12.55375 -12.35676 -12.09980 -12.03205 -11.76577 -11.58420 -11.56404 -11.01588 -10.82042 -10.56149 -10.50706 -10.47900 -10.33703 -10.03371 -9.96148 -9.66330 -9.62502 -9.43687 -8.88140 -8.67261 -8.37045 -6.92573 -5.75714 -3.05017 -0.13379 0.56450 1.42221 2.45922 2.78536 3.00944 3.44258 3.48611 3.50037 3.79804 4.09203 4.18023 4.32280 4.37460 4.50998 4.56059 4.61896 4.62909 4.75332 4.80658 4.90465 5.04894 5.23332 5.25653 5.32543 5.40234 5.47657 5.53846 5.58771 5.61656 5.66536 5.71573 5.82069 5.88648 5.96399 5.97891 6.06916 6.07291 6.11126 6.23566 6.31486 6.36518 6.44226 6.48996 6.63652 6.73801 6.82322 7.49417 7.69322 7.70912 8.06324 8.42692 9.53914 10.10889 10.45190 11.46815 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019810 B = 0.002533 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.082340 B =11051.067670 C =11880.581805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.079 4.079 3 C 0.169 3.831 4 N -0.731 5.731 5 C -0.242 4.242 6 H 0.069 0.931 7 C -0.012 4.012 8 N -0.932 5.932 9 Si 0.907 3.093 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C -0.125 4.125 14 C 0.100 3.900 15 N -0.611 5.611 16 C 0.575 3.425 17 O -0.527 6.527 18 C -0.114 4.114 19 C -0.063 4.063 20 C -0.127 4.127 21 C -0.066 4.066 22 C -0.118 4.118 23 C 0.141 3.859 24 N -0.486 5.486 25 C 0.077 3.923 26 C -0.143 4.143 27 C 0.010 3.990 28 C 0.119 3.881 29 H 0.043 0.957 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.021 0.979 33 H 0.024 0.976 34 H 0.385 0.615 35 H 0.256 0.744 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.137 0.863 43 H 0.164 0.836 44 H 0.156 0.844 45 H 0.154 0.846 46 H 0.091 0.909 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.540 -23.902 -11.984 26.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.080 4.080 3 C 0.041 3.959 4 N -0.376 5.376 5 C -0.373 4.373 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.580 5.580 9 Si 0.738 3.262 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.163 4.163 14 C -0.024 4.024 15 N -0.344 5.344 16 C 0.363 3.637 17 O -0.405 6.405 18 C -0.117 4.117 19 C -0.083 4.083 20 C -0.145 4.145 21 C -0.086 4.086 22 C -0.120 4.120 23 C -0.031 4.031 24 N -0.194 5.194 25 C -0.066 4.066 26 C -0.163 4.163 27 C 0.004 3.996 28 C -0.002 4.002 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.039 0.961 33 H 0.041 0.959 34 H 0.220 0.780 35 H 0.066 0.934 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.155 0.845 43 H 0.181 0.819 44 H 0.174 0.826 45 H 0.172 0.828 46 H 0.110 0.890 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.636 -24.223 -11.019 26.742 hybrid contribution 0.840 1.554 0.149 1.773 sum 3.477 -22.669 -10.870 25.380 Atomic orbital electron populations 1.21709 0.93435 1.00604 1.02942 1.21798 0.96667 0.96043 0.93477 1.20621 0.95620 0.87772 0.91850 1.42404 1.56986 1.10811 1.27392 1.19153 1.23176 0.87879 1.07106 0.91271 1.24741 0.99997 0.98296 0.97812 1.69647 1.36021 1.36360 1.15962 0.86277 0.77794 0.84993 0.77143 1.21310 1.21714 1.21305 1.22597 1.02128 0.93555 0.98029 1.22254 0.99664 0.98900 0.81545 1.48749 1.66045 1.08038 1.11600 1.17641 0.77660 0.83111 0.85239 1.90815 1.46246 1.85600 1.17801 1.19876 0.97160 0.94083 1.00619 1.21618 0.96702 0.96981 0.92980 1.20847 0.99745 0.93074 1.00872 1.21153 0.92406 0.99766 0.95248 1.18994 0.98102 0.94459 1.00454 1.23197 0.88365 0.98501 0.93017 1.67421 1.23511 1.19999 1.08448 1.22303 0.98547 0.88177 0.97588 1.22324 0.93690 1.02587 0.97677 1.17886 0.94127 0.92223 0.95346 1.22573 1.01914 0.77301 0.98400 0.93801 0.91046 0.92671 0.96107 0.95850 0.78009 0.93404 0.90070 0.90456 0.91417 0.90926 0.84621 0.84808 0.84510 0.81852 0.82644 0.82807 0.89015 0.90418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 8.30 37.16 0.31 -1.77 16 2 C -0.08 -1.19 0.64 -152.82 -0.10 -1.29 16 3 C 0.17 3.20 5.11 -4.04 -0.02 3.17 16 4 N -0.73 -17.90 5.16 -59.91 -0.31 -18.21 16 5 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 6 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -28.20 13.06 55.49 0.72 -27.48 16 9 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 C -0.12 -1.37 6.08 -25.36 -0.15 -1.52 16 14 C 0.10 0.99 5.31 -2.98 -0.02 0.98 16 15 N -0.61 -8.36 3.19 -171.23 -0.55 -8.90 16 16 C 0.57 8.66 7.20 -12.51 -0.09 8.57 16 17 O -0.53 -9.89 14.92 5.28 0.08 -9.81 16 18 C -0.11 -1.40 5.42 -104.70 -0.57 -1.96 16 19 C -0.06 -0.56 8.24 -39.11 -0.32 -0.88 16 20 C -0.13 -0.85 9.92 -40.01 -0.40 -1.25 16 21 C -0.07 -0.45 9.79 -39.44 -0.39 -0.84 16 22 C -0.12 -1.16 5.74 -106.88 -0.61 -1.77 16 23 C 0.14 1.31 11.05 -16.95 -0.19 1.12 16 24 N -0.49 -5.62 10.30 -13.11 -0.14 -5.75 16 25 C 0.08 0.90 11.07 -17.93 -0.20 0.70 16 26 C -0.14 -1.88 9.21 -39.49 -0.36 -2.24 16 27 C 0.01 0.12 5.76 -106.55 -0.61 -0.49 16 28 C 0.12 1.92 5.68 -2.31 -0.01 1.91 16 29 H 0.04 0.66 8.07 -51.93 -0.42 0.24 16 30 H 0.07 1.36 6.69 -51.93 -0.35 1.02 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.02 0.39 8.11 -51.93 -0.42 -0.03 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.39 10.02 6.21 -40.82 -0.25 9.77 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.08 0.80 7.85 -51.93 -0.41 0.40 16 37 H 0.08 0.77 7.87 -51.93 -0.41 0.36 16 38 H 0.07 0.54 7.12 -51.93 -0.37 0.17 16 39 H 0.07 0.64 7.31 -51.93 -0.38 0.26 16 40 H 0.14 0.99 6.05 -52.49 -0.32 0.67 16 41 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 42 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 43 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 44 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 45 H 0.15 2.24 5.98 -52.49 -0.31 1.93 16 46 H 0.09 1.77 7.71 -51.93 -0.40 1.37 16 47 H 0.08 1.26 8.02 -51.93 -0.42 0.84 16 LS Contribution 379.17 15.07 5.71 5.71 Total: -1.00 -34.09 379.17 -10.01 -44.10 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -6.54 Total: 7.80 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -3.98 Total: -4.81 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: -0.27 Total: -60.34 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.08 Total: -9.81 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.09 -10.01 -44.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724266539.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.905 kcal (2) G-P(sol) polarization free energy of solvation -34.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds