Wall clock time and date at job start Tue Mar 31 2020 22:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 110.65774 * 2 1 4 4 N 1.46500 * 109.47178 * 56.80241 * 3 2 1 5 5 C 1.36943 * 119.99402 * 180.02562 * 4 3 2 6 6 H 1.07997 * 119.99976 * 0.02562 * 5 4 3 7 7 C 1.38808 * 119.99524 * 179.97438 * 5 4 3 8 8 N 1.31624 * 120.00305 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99943 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47164 * 60.00083 * 9 7 5 11 11 H 1.48501 * 109.47112 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47179 * 300.00043 * 9 7 5 13 13 C 1.54608 * 110.74055 * 236.80143 * 2 1 3 14 14 C 1.54000 * 105.04920 * 263.51292 * 13 2 1 15 15 N 1.47492 * 107.08268 * 1.30577 * 14 13 2 16 16 C 1.34777 * 127.03361 * 154.51438 * 15 14 13 17 17 O 1.21601 * 119.99584 * 185.25203 * 16 15 14 18 18 C 1.47450 * 119.99741 * 5.25172 * 16 15 14 19 19 C 1.38853 * 120.46356 * 38.26639 * 18 16 15 20 20 C 1.38898 * 120.67406 * 180.02562 * 19 18 16 21 21 C 1.36373 * 121.27690 * 0.03549 * 20 19 18 22 22 C 1.40407 * 119.98527 * 359.97438 * 21 20 19 23 23 C 1.40465 * 121.95909 * 179.97438 * 22 21 20 24 24 N 1.31270 * 119.88201 * 180.02562 * 23 22 21 25 25 C 1.32553 * 122.73761 * 359.97438 * 24 23 22 26 26 C 1.36335 * 121.81708 * 0.02562 * 25 24 23 27 27 C 1.40293 * 118.70005 * 359.97438 * 26 25 24 28 28 C 1.48120 * 105.93108 * 334.78193 * 15 14 13 29 29 H 1.09000 * 109.46840 * 183.19635 * 1 2 3 30 30 H 1.09000 * 109.47012 * 303.19812 * 1 2 3 31 31 H 1.08996 * 109.46644 * 63.19790 * 1 2 3 32 32 H 1.08999 * 109.46700 * 176.80888 * 3 2 1 33 33 H 1.09003 * 109.46817 * 296.80260 * 3 2 1 34 34 H 0.96993 * 120.00464 * 0.02562 * 4 3 2 35 35 H 0.97000 * 120.00075 * 179.97438 * 8 7 5 36 36 H 1.09003 * 110.32409 * 144.62023 * 13 2 1 37 37 H 1.09000 * 110.41826 * 22.45335 * 13 2 1 38 38 H 1.09001 * 109.91846 * 241.94984 * 14 13 2 39 39 H 1.08997 * 109.91743 * 120.66793 * 14 13 2 40 40 H 1.08001 * 119.66166 * 0.02562 * 19 18 16 41 41 H 1.08000 * 119.36742 * 180.02562 * 20 19 18 42 42 H 1.07996 * 120.01100 * 180.02562 * 21 20 19 43 43 H 1.08001 * 120.05382 * 0.04447 * 23 22 21 44 44 H 1.07998 * 119.09090 * 180.27839 * 25 24 23 45 45 H 1.07997 * 120.64831 * 179.97438 * 26 25 24 46 46 H 1.08997 * 110.66377 * 157.50775 * 28 15 14 47 47 H 1.09001 * 110.65529 * 280.62149 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0698 1.4317 0.0000 4 7 1.5344 2.1554 1.1558 5 6 1.8809 3.4637 1.3648 6 1 2.5484 3.9620 0.6773 7 6 1.3733 4.1496 2.4595 8 7 0.5593 3.5425 3.2970 9 14 1.8452 5.9344 2.7443 10 1 1.4184 6.7512 1.5799 11 1 1.1753 6.4338 3.9720 12 1 3.3176 6.0371 2.9079 13 6 2.0775 -0.7917 -1.2099 14 6 2.3763 -2.2003 -0.6639 15 7 1.9871 -2.2051 0.7587 16 6 1.6220 -3.2721 1.4968 17 8 1.2331 -3.1172 2.6385 18 6 1.6943 -4.6271 0.9199 19 6 2.7452 -4.9813 0.0843 20 6 2.8173 -6.2564 -0.4620 21 6 1.8641 -7.1950 -0.1973 22 6 0.7835 -6.8804 0.6422 23 6 -0.2216 -7.8147 0.9422 24 7 -1.2141 -7.4767 1.7320 25 6 -1.3202 -6.2719 2.2745 26 6 -0.3962 -5.2962 2.0445 27 6 0.6940 -5.5840 1.2097 28 6 2.0732 -0.7965 1.2085 29 1 -0.3633 -1.0261 0.0573 30 1 -0.3633 0.5627 0.8599 31 1 -0.3632 0.4634 -0.9173 32 1 3.1581 1.4096 0.0572 33 1 1.7643 1.9351 -0.9173 34 1 0.9347 1.7080 1.7729 35 1 0.2049 4.0217 4.0623 36 1 2.9910 -0.3287 -1.5832 37 1 1.3293 -0.8430 -2.0009 38 1 3.4403 -2.4173 -0.7584 39 1 1.7937 -2.9417 -1.2107 40 1 3.5143 -4.2580 -0.1432 41 1 3.6443 -6.5094 -1.1089 42 1 1.9406 -8.1803 -0.6327 43 1 -0.1775 -8.8095 0.5240 44 1 -2.1596 -6.0586 2.9197 45 1 -0.5015 -4.3208 2.4960 46 1 1.4488 -0.6344 2.0871 47 1 3.1076 -0.5212 1.4144 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724266539.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:38 Heat of formation + Delta-G solvation = 17.659982 kcal Electronic energy + Delta-G solvation = -29076.828652 eV Core-core repulsion = 25223.826675 eV Total energy + Delta-G solvation = -3853.001977 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.17221 -41.06260 -39.29160 -38.14997 -36.52071 -34.47630 -33.91581 -32.46784 -32.01789 -30.83189 -30.46926 -28.01712 -27.33910 -25.75691 -25.06837 -24.52420 -23.92994 -23.25252 -20.71487 -20.20799 -19.34862 -19.03073 -18.28938 -17.74965 -17.48775 -17.06846 -16.70383 -16.46311 -15.80237 -15.64917 -15.47543 -15.31488 -15.16135 -15.08450 -14.71118 -14.64600 -14.49535 -13.97851 -13.66791 -13.60947 -13.50022 -13.13288 -13.03853 -12.97113 -12.78755 -12.76088 -12.57963 -12.51376 -12.22027 -12.07810 -11.71315 -11.50779 -11.44909 -11.27940 -11.03859 -10.92139 -10.52294 -10.14449 -9.79568 -9.13443 -8.98296 -7.93992 -5.22825 -0.85511 -0.16138 0.60031 1.46000 1.49460 1.55579 1.58432 1.80108 2.10831 2.56141 3.02963 3.22408 3.39510 3.45026 3.54420 3.59579 3.66556 3.76489 3.83256 3.86369 3.91891 4.13326 4.18436 4.26360 4.29804 4.34429 4.37457 4.50627 4.61538 4.66904 4.73056 4.74341 4.77268 4.83735 4.88575 4.94492 5.01922 5.04369 5.07310 5.10516 5.25108 5.28346 5.33335 5.35394 5.43532 5.50666 5.60024 5.77690 6.27301 6.43621 6.91747 6.96866 7.33668 8.11405 8.32440 9.29585 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019810 B = 0.002533 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.082340 B =11051.067670 C =11880.581805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.072 4.072 3 C 0.168 3.832 4 N -0.746 5.746 5 C -0.241 4.241 6 H 0.081 0.919 7 C -0.080 4.080 8 N -0.974 5.974 9 Si 0.974 3.026 10 H -0.275 1.275 11 H -0.300 1.300 12 H -0.277 1.277 13 C -0.114 4.114 14 C 0.097 3.903 15 N -0.609 5.609 16 C 0.568 3.432 17 O -0.585 6.585 18 C -0.153 4.153 19 C -0.040 4.040 20 C -0.125 4.125 21 C -0.042 4.042 22 C -0.133 4.133 23 C 0.156 3.844 24 N -0.513 5.513 25 C 0.075 3.925 26 C -0.179 4.179 27 C -0.007 4.007 28 C 0.123 3.877 29 H 0.047 0.953 30 H 0.028 0.972 31 H 0.068 0.932 32 H 0.031 0.969 33 H 0.032 0.968 34 H 0.372 0.628 35 H 0.249 0.751 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.155 0.845 41 H 0.179 0.821 42 H 0.184 0.816 43 H 0.209 0.791 44 H 0.161 0.839 45 H 0.121 0.879 46 H 0.042 0.958 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.414 -26.728 -16.471 32.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.074 4.074 3 C 0.041 3.959 4 N -0.389 5.389 5 C -0.372 4.372 6 H 0.098 0.902 7 C -0.272 4.272 8 N -0.625 5.625 9 Si 0.803 3.197 10 H -0.201 1.201 11 H -0.227 1.227 12 H -0.203 1.203 13 C -0.152 4.152 14 C -0.024 4.024 15 N -0.341 5.341 16 C 0.359 3.641 17 O -0.467 6.467 18 C -0.156 4.156 19 C -0.060 4.060 20 C -0.143 4.143 21 C -0.062 4.062 22 C -0.135 4.135 23 C -0.016 4.016 24 N -0.222 5.222 25 C -0.067 4.067 26 C -0.199 4.199 27 C -0.013 4.013 28 C 0.000 4.000 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.205 0.795 35 H 0.058 0.942 36 H 0.121 0.879 37 H 0.114 0.886 38 H 0.120 0.880 39 H 0.111 0.889 40 H 0.172 0.828 41 H 0.196 0.804 42 H 0.202 0.798 43 H 0.226 0.774 44 H 0.179 0.821 45 H 0.139 0.861 46 H 0.061 0.939 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.550 -27.053 -15.592 31.714 hybrid contribution 0.020 2.301 1.434 2.711 sum 5.570 -24.752 -14.157 29.054 Atomic orbital electron populations 1.21602 0.94461 1.00197 1.01587 1.21665 0.95705 0.94477 0.95521 1.20822 0.95913 0.89310 0.89842 1.42671 1.56926 1.10454 1.28847 1.19636 1.21949 0.89070 1.06587 0.90152 1.25606 1.00829 1.02626 0.98170 1.69842 1.38059 1.37913 1.16660 0.85196 0.77661 0.80091 0.76719 1.20147 1.22675 1.20269 1.22610 1.03373 0.93118 0.96092 1.22571 1.02054 0.98834 0.78934 1.48784 1.65658 1.06465 1.13203 1.18302 0.76505 0.84610 0.84689 1.90775 1.48801 1.86594 1.20495 1.19645 0.99661 0.92352 1.03985 1.21967 0.94992 0.98549 0.90508 1.21333 1.00780 0.91558 1.00610 1.21716 0.90150 1.01702 0.92616 1.19301 0.99680 0.93174 1.01308 1.23996 0.86806 0.99894 0.90861 1.67502 1.25110 1.19429 1.10128 1.22386 0.98387 0.88390 0.97566 1.22130 0.95895 1.01797 1.00092 1.18119 0.93845 0.93846 0.95515 1.22296 1.00631 0.79708 0.97333 0.93368 0.95302 0.91285 0.95081 0.94975 0.79541 0.94233 0.87876 0.88607 0.88002 0.88915 0.82768 0.80412 0.79836 0.77410 0.82143 0.86113 0.93921 0.90648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.06 8.30 71.98 0.60 -3.46 16 2 C -0.07 -2.20 0.64 -51.09 -0.03 -2.24 16 3 C 0.17 6.28 5.11 86.38 0.44 6.72 16 4 N -0.75 -37.88 5.16 -343.44 -1.77 -39.65 16 5 C -0.24 -13.45 9.99 84.03 0.84 -12.61 16 6 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 7 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 8 N -0.97 -61.89 13.06 21.65 0.28 -61.61 16 9 Si 0.97 46.95 29.55 68.60 2.03 48.98 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 C -0.11 -2.14 6.08 31.48 0.19 -1.94 16 14 C 0.10 1.64 5.31 86.53 0.46 2.10 16 15 N -0.61 -16.94 3.19 -813.90 -2.60 -19.53 16 16 C 0.57 18.28 7.20 86.67 0.62 18.91 16 17 O -0.59 -24.82 14.92 -4.03 -0.06 -24.88 16 18 C -0.15 -3.71 5.42 -19.92 -0.11 -3.81 16 19 C -0.04 -0.57 8.24 22.58 0.19 -0.38 16 20 C -0.13 -0.93 9.92 21.99 0.22 -0.71 16 21 C -0.04 -0.34 9.79 22.36 0.22 -0.12 16 22 C -0.13 -2.24 5.74 -21.33 -0.12 -2.37 16 23 C 0.16 2.47 11.05 85.32 0.94 3.41 16 24 N -0.51 -11.69 10.30 -195.40 -2.01 -13.71 16 25 C 0.07 1.91 11.07 84.14 0.93 2.84 16 26 C -0.18 -5.27 9.21 22.33 0.21 -5.06 16 27 C -0.01 -0.19 5.76 -21.11 -0.12 -0.31 16 28 C 0.12 4.21 5.68 86.61 0.49 4.70 16 29 H 0.05 1.54 8.07 -2.39 -0.02 1.52 16 30 H 0.03 1.19 6.69 -2.39 -0.02 1.18 16 31 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.03 1.13 8.11 -2.39 -0.02 1.11 16 33 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.37 20.78 6.21 -92.71 -0.58 20.20 16 35 H 0.25 15.46 8.31 -92.71 -0.77 14.69 16 36 H 0.10 1.56 7.85 -2.39 -0.02 1.54 16 37 H 0.10 1.51 7.87 -2.39 -0.02 1.49 16 38 H 0.10 1.09 7.12 -2.39 -0.02 1.07 16 39 H 0.09 1.26 7.31 -2.39 -0.02 1.24 16 40 H 0.15 1.51 6.05 -2.91 -0.02 1.49 16 41 H 0.18 -0.12 8.06 -2.91 -0.02 -0.14 16 42 H 0.18 -0.20 8.06 -2.91 -0.02 -0.22 16 43 H 0.21 1.22 8.06 -2.91 -0.02 1.19 16 44 H 0.16 3.58 8.06 -2.91 -0.02 3.56 16 45 H 0.12 4.25 5.98 -2.91 -0.02 4.23 16 46 H 0.04 1.86 7.71 -2.39 -0.02 1.84 16 47 H 0.08 2.56 8.02 -2.39 -0.02 2.54 16 Total: -1.00 -83.81 379.17 2.72 -81.09 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: 0.42 Total: 27.90 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 6.43 Total: 1.42 kcal Atomic # 7 Polarization: -128.40 SS G_CDS: -6.10 Total: -134.50 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -0.06 Total: -24.88 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -83.81 2.72 -81.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724266539.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.748 kcal (2) G-P(sol) polarization free energy of solvation -83.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds