Wall clock time and date at job start Tue Mar 31 2020 22:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 110.63892 * 2 1 4 4 N 1.46502 * 109.46965 * 298.31273 * 3 2 1 5 5 C 1.36936 * 119.99759 * 180.02562 * 4 3 2 6 6 H 1.07998 * 120.00221 * 359.97438 * 5 4 3 7 7 C 1.38810 * 119.99984 * 180.02562 * 5 4 3 8 8 N 1.31624 * 120.00121 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00249 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47059 * 59.99985 * 9 7 5 11 11 H 1.48501 * 109.47260 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46856 * 300.00010 * 9 7 5 13 13 C 1.55159 * 110.87338 * 123.24845 * 2 1 3 14 14 C 1.55129 * 101.48552 * 82.76710 * 13 2 1 15 15 N 1.47424 * 104.72397 * 37.29307 * 14 13 2 16 16 C 1.34771 * 125.64811 * 155.81775 * 15 14 13 17 17 O 1.21605 * 120.00281 * 184.94286 * 16 15 14 18 18 C 1.47454 * 120.00276 * 4.94138 * 16 15 14 19 19 C 1.38858 * 120.45614 * 39.38166 * 18 16 15 20 20 C 1.38900 * 120.67541 * 180.02562 * 19 18 16 21 21 C 1.36377 * 121.26991 * 359.97438 * 20 19 18 22 22 C 1.40395 * 119.98818 * 0.02562 * 21 20 19 23 23 C 1.40470 * 121.95624 * 179.97438 * 22 21 20 24 24 N 1.31286 * 119.87963 * 180.02562 * 23 22 21 25 25 C 1.32551 * 122.73462 * 359.97438 * 24 23 22 26 26 C 1.36331 * 121.81982 * 0.28266 * 25 24 23 27 27 C 1.40292 * 118.70006 * 359.45724 * 26 25 24 28 28 C 1.47024 * 108.70346 * 335.55646 * 15 14 13 29 29 H 1.08999 * 109.46929 * 181.68982 * 1 2 3 30 30 H 1.08995 * 109.47089 * 301.68751 * 1 2 3 31 31 H 1.08995 * 109.47504 * 61.68908 * 1 2 3 32 32 H 1.08994 * 109.47288 * 58.31053 * 3 2 1 33 33 H 1.09004 * 109.47020 * 178.31631 * 3 2 1 34 34 H 0.97001 * 120.00024 * 359.97438 * 4 3 2 35 35 H 0.96997 * 120.00350 * 180.02562 * 8 7 5 36 36 H 1.09002 * 111.00037 * 201.00971 * 13 2 1 37 37 H 1.08997 * 110.99939 * 324.81608 * 13 2 1 38 38 H 1.09005 * 110.49547 * 278.45640 * 14 13 2 39 39 H 1.08997 * 110.34372 * 156.05959 * 14 13 2 40 40 H 1.08000 * 119.66886 * 359.97438 * 19 18 16 41 41 H 1.08001 * 119.36935 * 180.02562 * 20 19 18 42 42 H 1.08002 * 120.00330 * 179.97438 * 21 20 19 43 43 H 1.07999 * 120.06150 * 0.02562 * 23 22 21 44 44 H 1.07996 * 119.08836 * 179.97438 * 25 24 23 45 45 H 1.07998 * 120.64757 * 179.71584 * 26 25 24 46 46 H 1.08994 * 109.88309 * 120.70175 * 28 15 14 47 47 H 1.09004 * 109.87808 * 241.71675 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0693 1.4318 0.0000 4 7 1.6284 2.1197 -1.2160 5 6 1.9923 3.4213 -1.4365 6 1 2.6040 3.9408 -0.7139 7 6 1.5741 4.0732 -2.5884 8 7 0.8282 3.4402 -3.4690 9 14 2.0699 5.8490 -2.8890 10 1 3.5508 5.9479 -2.9384 11 1 1.5002 6.3102 -4.1805 12 1 1.5535 6.7003 -1.7873 13 6 2.0829 -0.7949 1.2124 14 6 2.0141 -2.2517 0.6840 15 7 2.3756 -2.1507 -0.7417 16 6 2.8902 -3.1436 -1.4938 17 8 3.2355 -2.9227 -2.6387 18 6 3.0345 -4.4978 -0.9285 19 6 2.0506 -5.0240 -0.1020 20 6 2.1821 -6.2989 0.4334 21 6 3.2747 -7.0699 0.1656 22 6 4.2940 -6.5781 -0.6652 23 6 5.4371 -7.3363 -0.9680 24 7 6.3658 -6.8359 -1.7494 25 6 6.2794 -5.6245 -2.2805 26 6 5.2124 -4.8098 -2.0427 27 6 4.1766 -5.2788 -1.2210 28 6 2.0760 -0.7891 -1.2086 29 1 -0.3633 -1.0272 0.0303 30 1 -0.3633 0.5398 0.8744 31 1 -0.3634 0.4873 -0.9047 32 1 1.6923 1.9621 0.8744 33 1 3.1587 1.4098 0.0302 34 1 1.0793 1.6529 -1.8653 35 1 0.5362 3.8957 -4.2741 36 1 3.1097 -0.5043 1.4346 37 1 1.4450 -0.6671 2.0869 38 1 1.0051 -2.6497 0.7921 39 1 2.7297 -2.8810 1.2131 40 1 1.1745 -4.4357 0.1277 41 1 1.4038 -6.6875 1.0735 42 1 3.3561 -8.0583 0.5931 43 1 5.5517 -8.3292 -0.5587 44 1 7.0785 -5.2713 -2.9152 45 1 5.1636 -3.8243 -2.4817 46 1 2.9851 -0.3162 -1.5801 47 1 1.3270 -0.8250 -1.9998 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724266541.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:43 Heat of formation + Delta-G solvation = 37.721194 kcal Electronic energy + Delta-G solvation = -28991.021771 eV Core-core repulsion = 25138.889713 eV Total energy + Delta-G solvation = -3852.132058 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.34748 -40.04166 -38.15250 -37.36608 -34.88476 -33.25365 -32.79593 -31.49496 -30.59174 -30.04259 -29.12372 -26.72762 -25.82154 -24.77255 -23.83871 -23.73340 -22.82977 -21.98469 -19.76473 -18.88941 -18.44972 -17.63354 -17.07003 -16.85992 -16.45200 -16.27099 -15.35094 -15.12642 -14.74874 -14.68432 -14.44217 -14.07350 -13.95164 -13.85902 -13.62816 -13.24502 -13.16485 -12.92714 -12.65793 -12.50518 -12.39226 -12.10399 -12.10108 -11.77585 -11.68049 -11.64767 -11.04359 -10.83166 -10.64114 -10.48460 -10.46951 -10.35544 -10.03902 -9.95971 -9.66347 -9.63754 -9.43521 -8.87975 -8.63173 -8.36526 -6.93065 -5.76244 -3.05308 -0.13349 0.56241 1.42053 2.46273 2.80847 3.00902 3.44556 3.49044 3.50098 3.79305 4.08729 4.17394 4.32247 4.37271 4.48759 4.55710 4.56385 4.62046 4.74994 4.78465 4.91630 5.04406 5.21975 5.24857 5.30134 5.39330 5.41872 5.53223 5.57253 5.60545 5.63884 5.66480 5.82061 5.88691 5.95295 6.01066 6.04570 6.07766 6.12738 6.25507 6.30152 6.33823 6.43675 6.45990 6.59482 6.69862 6.78618 7.46738 7.69392 7.70203 8.07564 8.42213 9.53595 10.09980 10.44507 11.46405 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017805 B = 0.002564 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.231893 B =10918.892895 C =11917.779219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.077 4.077 3 C 0.169 3.831 4 N -0.730 5.730 5 C -0.241 4.241 6 H 0.069 0.931 7 C -0.012 4.012 8 N -0.932 5.932 9 Si 0.907 3.093 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C -0.123 4.123 14 C 0.097 3.903 15 N -0.608 5.608 16 C 0.569 3.431 17 O -0.527 6.527 18 C -0.114 4.114 19 C -0.063 4.063 20 C -0.127 4.127 21 C -0.066 4.066 22 C -0.118 4.118 23 C 0.141 3.859 24 N -0.486 5.486 25 C 0.076 3.924 26 C -0.143 4.143 27 C 0.010 3.990 28 C 0.121 3.879 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.025 0.975 33 H 0.021 0.979 34 H 0.385 0.615 35 H 0.256 0.744 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.137 0.863 43 H 0.165 0.835 44 H 0.156 0.844 45 H 0.153 0.847 46 H 0.079 0.921 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.719 -23.668 12.675 26.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.078 4.078 3 C 0.041 3.959 4 N -0.375 5.375 5 C -0.373 4.373 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.581 5.581 9 Si 0.738 3.262 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.161 4.161 14 C -0.026 4.026 15 N -0.341 5.341 16 C 0.358 3.642 17 O -0.404 6.404 18 C -0.117 4.117 19 C -0.083 4.083 20 C -0.145 4.145 21 C -0.086 4.086 22 C -0.120 4.120 23 C -0.031 4.031 24 N -0.194 5.194 25 C -0.066 4.066 26 C -0.163 4.163 27 C 0.004 3.996 28 C 0.000 4.000 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.042 0.958 33 H 0.038 0.962 34 H 0.219 0.781 35 H 0.066 0.934 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.155 0.845 43 H 0.182 0.818 44 H 0.173 0.827 45 H 0.171 0.829 46 H 0.098 0.902 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.807 -23.789 11.714 26.789 hybrid contribution -0.797 1.413 -0.253 1.642 sum 3.010 -22.376 11.461 25.320 Atomic orbital electron populations 1.21756 0.93231 1.00552 1.03339 1.21837 0.96452 0.96281 0.93233 1.20638 0.96111 0.87972 0.91182 1.42358 1.62596 1.11812 1.20744 1.19153 1.26346 0.88455 1.03310 0.91273 1.24733 1.00519 0.98346 0.97220 1.69641 1.40313 1.36556 1.11558 0.86273 0.77999 0.84860 0.77065 1.21289 1.21703 1.21299 1.22909 1.02420 0.92888 0.97894 1.22547 1.00136 0.98654 0.81231 1.48470 1.62140 1.12182 1.11292 1.17693 0.77876 0.83386 0.85276 1.90820 1.49098 1.82889 1.17626 1.19875 0.96204 0.94941 1.00649 1.21622 0.97919 0.95726 0.93033 1.20852 0.98657 0.94108 1.00858 1.21150 0.92459 0.99732 0.95270 1.18990 0.97714 0.94748 1.00530 1.23204 0.87990 0.98884 0.92974 1.67428 1.29339 1.14020 1.08614 1.22291 0.97422 0.89327 0.97582 1.22295 0.93529 1.02725 0.97729 1.17884 0.93661 0.92659 0.95396 1.22142 1.01581 0.79498 0.96800 0.93567 0.92312 0.91099 0.95759 0.96172 0.78106 0.93421 0.90245 0.89589 0.91146 0.90699 0.84601 0.84787 0.84502 0.81837 0.82667 0.82934 0.90247 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 8.26 37.16 0.31 -1.56 16 2 C -0.08 -1.14 0.61 -152.67 -0.09 -1.24 16 3 C 0.17 3.22 5.07 -4.04 -0.02 3.20 16 4 N -0.73 -17.90 5.15 -59.91 -0.31 -18.21 16 5 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 6 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 7 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 8 N -0.93 -28.17 13.06 55.49 0.72 -27.44 16 9 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 C -0.12 -1.35 6.04 -24.46 -0.15 -1.49 16 14 C 0.10 0.98 4.96 -2.41 -0.01 0.97 16 15 N -0.61 -8.48 3.32 -171.64 -0.57 -9.05 16 16 C 0.57 8.72 7.13 -12.51 -0.09 8.63 16 17 O -0.53 -10.07 15.14 5.27 0.08 -9.99 16 18 C -0.11 -1.40 5.36 -104.70 -0.56 -1.96 16 19 C -0.06 -0.56 8.22 -39.11 -0.32 -0.89 16 20 C -0.13 -0.85 9.92 -40.01 -0.40 -1.25 16 21 C -0.07 -0.45 9.79 -39.44 -0.39 -0.84 16 22 C -0.12 -1.15 5.74 -106.88 -0.61 -1.77 16 23 C 0.14 1.30 11.05 -16.95 -0.19 1.12 16 24 N -0.49 -5.59 10.30 -13.11 -0.14 -5.73 16 25 C 0.08 0.89 11.07 -17.93 -0.20 0.69 16 26 C -0.14 -1.87 9.21 -39.50 -0.36 -2.24 16 27 C 0.01 0.12 5.76 -106.55 -0.61 -0.49 16 28 C 0.12 2.01 5.47 -3.06 -0.02 2.00 16 29 H 0.05 0.55 7.44 -51.93 -0.39 0.16 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.07 1.21 7.11 -51.93 -0.37 0.84 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.02 0.40 8.13 -51.93 -0.42 -0.02 16 34 H 0.38 9.92 6.37 -40.82 -0.26 9.66 16 35 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.08 0.89 8.04 -51.93 -0.42 0.47 16 37 H 0.09 0.77 8.04 -51.93 -0.42 0.35 16 38 H 0.07 0.58 6.59 -51.93 -0.34 0.24 16 39 H 0.07 0.65 7.35 -51.93 -0.38 0.27 16 40 H 0.14 1.01 6.03 -52.49 -0.32 0.70 16 41 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 42 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 43 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 44 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 45 H 0.15 2.22 6.04 -52.49 -0.32 1.90 16 46 H 0.08 1.54 7.82 -51.93 -0.41 1.14 16 47 H 0.07 1.33 7.85 -51.93 -0.41 0.93 16 LS Contribution 378.45 15.07 5.70 5.70 Total: -1.00 -34.34 378.45 -10.02 -44.35 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -6.53 Total: 7.31 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -3.96 Total: -4.39 kcal Atomic # 7 Polarization: -60.14 SS G_CDS: -0.29 Total: -60.43 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.08 Total: -9.99 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.34 -10.02 -44.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724266541.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.074 kcal (2) G-P(sol) polarization free energy of solvation -34.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds