Wall clock time and date at job start Tue Mar 31 2020 23:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38172 * 120.49609 * 2 1 4 4 N 1.31799 * 120.89270 * 180.02562 * 3 2 1 5 5 C 1.31831 * 122.04657 * 359.97438 * 4 3 2 6 6 C 1.38125 * 120.90120 * 0.02562 * 5 4 3 7 7 C 1.39794 * 120.50174 * 180.02562 * 2 1 3 8 8 C 1.48151 * 120.92200 * 0.02562 * 7 2 1 9 9 O 1.21520 * 120.00018 * 353.89927 * 8 7 2 10 10 N 1.34773 * 120.00194 * 173.90280 * 8 7 2 11 11 C 1.46503 * 120.00087 * 180.02562 * 10 8 7 12 12 C 1.50705 * 109.47045 * 179.97438 * 11 10 8 13 13 C 1.38236 * 119.99883 * 269.72393 * 12 11 10 14 14 C 1.38229 * 119.99583 * 179.76380 * 13 12 11 15 15 C 1.38241 * 120.00441 * 0.51174 * 14 13 12 16 16 C 1.50700 * 120.00053 * 179.72416 * 15 14 13 17 17 H 1.09000 * 109.46378 * 200.02203 * 16 15 14 18 18 C 1.52999 * 109.47304 * 80.01915 * 16 15 14 19 19 N 1.46493 * 109.46926 * 320.01500 * 16 15 14 20 20 C 1.36946 * 120.00307 * 205.00154 * 19 16 15 21 21 H 1.08005 * 119.99348 * 0.02562 * 20 19 16 22 22 C 1.38807 * 120.00441 * 180.02562 * 20 19 16 23 23 N 1.31622 * 119.99988 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00056 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46758 * 90.00122 * 24 22 20 26 26 H 1.48498 * 109.47538 * 210.00189 * 24 22 20 27 27 H 1.48497 * 109.47227 * 330.00404 * 24 22 20 28 28 C 1.38235 * 119.99435 * 359.74096 * 15 14 13 29 29 C 1.38229 * 120.00397 * 0.02562 * 28 15 14 30 30 H 1.09001 * 109.46982 * 263.64564 * 1 2 3 31 31 H 1.08993 * 109.47215 * 23.64814 * 1 2 3 32 32 H 1.08997 * 109.46828 * 143.64974 * 1 2 3 33 33 H 1.07996 * 119.55522 * 0.03793 * 3 2 1 34 34 H 1.08003 * 119.55145 * 179.97438 * 5 4 3 35 35 H 1.08003 * 120.49908 * 179.97438 * 6 5 4 36 36 H 0.96998 * 119.99972 * 359.97438 * 10 8 7 37 37 H 1.08998 * 109.46506 * 299.99636 * 11 10 8 38 38 H 1.08995 * 109.47436 * 59.99740 * 11 10 8 39 39 H 1.07993 * 120.00005 * 0.02562 * 13 12 11 40 40 H 1.08001 * 119.99930 * 180.23107 * 14 13 12 41 41 H 1.08992 * 109.46948 * 299.99956 * 18 16 15 42 42 H 1.09004 * 109.46687 * 59.99903 * 18 16 15 43 43 H 1.08994 * 109.46982 * 179.97438 * 18 16 15 44 44 H 0.97006 * 120.00190 * 25.01004 * 19 16 15 45 45 H 0.96996 * 120.00353 * 179.97438 * 23 22 20 46 46 H 1.08007 * 119.99645 * 179.97438 * 28 15 14 47 47 H 1.08000 * 120.00581 * 179.97438 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.1906 0.0000 4 7 3.5262 1.1997 -0.0005 5 6 4.2334 0.0871 -0.0005 6 6 3.6137 -1.1473 -0.0006 7 6 2.2166 -1.2045 -0.0005 8 6 1.5079 -2.5055 -0.0017 9 8 0.2983 -2.5387 0.1097 10 7 2.2048 -3.6524 -0.1262 11 6 1.5040 -4.9389 -0.1279 12 6 2.5044 -6.0557 -0.2797 13 6 2.8477 -6.5096 -1.5394 14 6 3.7690 -7.5307 -1.6788 15 6 4.3391 -8.1051 -0.5580 16 6 5.3388 -9.2225 -0.7099 17 1 5.4085 -9.7771 0.2259 18 6 6.7086 -8.6373 -1.0593 19 7 4.9051 -10.1235 -1.7804 20 6 5.3161 -11.4299 -1.7844 21 1 5.9595 -11.7959 -0.9980 22 6 4.9056 -12.2835 -2.7991 23 7 4.1218 -11.8373 -3.7577 24 14 5.4667 -14.0652 -2.8048 25 1 4.4912 -14.8937 -2.0517 26 1 5.5533 -14.5525 -4.2049 27 1 6.8017 -14.1658 -2.1623 28 6 3.9918 -7.6547 0.7019 29 6 3.0741 -6.6303 0.8411 30 1 -0.3633 -0.1137 1.0214 31 1 -0.3633 0.9413 -0.4122 32 1 -0.3633 -0.8277 -0.6091 33 1 1.6691 2.1263 0.0006 34 1 5.3121 0.1416 -0.0014 35 1 4.1995 -2.0547 -0.0010 36 1 3.1703 -3.6259 -0.2154 37 1 0.9639 -5.0595 0.8112 38 1 0.7991 -4.9676 -0.9587 39 1 2.3993 -6.0636 -2.4148 40 1 4.0400 -7.8828 -2.6631 41 1 6.6388 -8.0827 -1.9949 42 1 7.0312 -7.9669 -0.2626 43 1 7.4317 -9.4455 -1.1686 44 1 4.3270 -9.7948 -2.4866 45 1 3.8353 -12.4337 -4.4670 46 1 4.4369 -8.1037 1.5775 47 1 2.8025 -6.2787 1.8255 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724747920.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:19 Heat of formation + Delta-G solvation = 33.132330 kcal Electronic energy + Delta-G solvation = -27500.819411 eV Core-core repulsion = 23648.488366 eV Total energy + Delta-G solvation = -3852.331046 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.13288 -39.71400 -39.03506 -36.13826 -34.82990 -33.77337 -32.83963 -32.15548 -30.79066 -30.31167 -28.45262 -27.78832 -26.26478 -24.74301 -23.90592 -22.77195 -22.51555 -21.66812 -21.12270 -19.79734 -18.58064 -17.49098 -17.19439 -16.11520 -15.95930 -15.82154 -15.68570 -15.39730 -15.13990 -14.74185 -14.47348 -14.22324 -13.90288 -13.80066 -13.46014 -13.42541 -13.19462 -13.07629 -13.02244 -12.78696 -12.50375 -12.34934 -11.99446 -11.96778 -11.60198 -11.28298 -10.97399 -10.87689 -10.68418 -10.58126 -10.34140 -10.27016 -10.04555 -9.73988 -9.72422 -9.46246 -9.29695 -9.02300 -8.71737 -8.40149 -7.04581 -5.82877 -3.11936 0.29890 0.63063 1.37311 1.61260 2.53488 2.85129 3.39853 3.40416 3.45038 3.46638 3.96256 3.98007 4.19582 4.29392 4.38749 4.54215 4.54393 4.62934 4.90618 4.93730 5.14153 5.18921 5.23391 5.25842 5.32550 5.37853 5.42481 5.50998 5.51430 5.65344 5.66858 5.71699 5.89270 5.93467 5.96041 6.10058 6.18108 6.19583 6.24653 6.28885 6.43955 6.55621 6.64464 6.69875 6.89289 7.09664 7.11807 7.20596 7.46661 7.64393 7.79725 8.35326 9.46734 10.01799 10.36832 11.39685 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023680 B = 0.001869 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.131648 B =14978.132119 C =15457.960344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.077 4.077 3 C 0.092 3.908 4 N -0.466 5.466 5 C 0.087 3.913 6 C -0.136 4.136 7 C -0.094 4.094 8 C 0.556 3.444 9 O -0.525 6.525 10 N -0.715 5.715 11 C 0.167 3.833 12 C -0.134 4.134 13 C -0.098 4.098 14 C -0.106 4.106 15 C -0.051 4.051 16 C 0.203 3.797 17 H 0.056 0.944 18 C -0.159 4.159 19 N -0.721 5.721 20 C -0.241 4.241 21 H 0.071 0.929 22 C -0.012 4.012 23 N -0.932 5.932 24 Si 0.908 3.092 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 C -0.121 4.121 29 C -0.101 4.101 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.096 0.904 33 H 0.162 0.838 34 H 0.163 0.837 35 H 0.140 0.860 36 H 0.402 0.598 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.119 0.881 40 H 0.129 0.871 41 H 0.048 0.952 42 H 0.038 0.962 43 H 0.057 0.943 44 H 0.385 0.615 45 H 0.256 0.744 46 H 0.121 0.879 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.841 24.445 9.068 26.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.080 4.080 3 C -0.065 4.065 4 N -0.175 5.175 5 C -0.070 4.070 6 C -0.156 4.156 7 C -0.105 4.105 8 C 0.342 3.658 9 O -0.403 6.403 10 N -0.367 5.367 11 C 0.045 3.955 12 C -0.134 4.134 13 C -0.116 4.116 14 C -0.124 4.124 15 C -0.052 4.052 16 C 0.093 3.907 17 H 0.074 0.926 18 C -0.220 4.220 19 N -0.364 5.364 20 C -0.372 4.372 21 H 0.089 0.911 22 C -0.209 4.209 23 N -0.580 5.580 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.207 1.207 28 C -0.140 4.140 29 C -0.120 4.120 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.114 0.886 33 H 0.179 0.821 34 H 0.180 0.820 35 H 0.158 0.842 36 H 0.238 0.762 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.137 0.863 40 H 0.147 0.853 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.076 0.924 44 H 0.220 0.780 45 H 0.066 0.934 46 H 0.139 0.861 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.213 24.988 9.161 26.807 hybrid contribution 0.267 -1.858 -0.378 1.914 sum -2.947 23.130 8.783 24.916 Atomic orbital electron populations 1.20994 0.88941 1.03546 1.03927 1.21145 0.98501 0.92429 0.95890 1.22773 0.89763 0.97438 0.96559 1.67559 1.08333 1.31856 1.09727 1.22746 1.00687 0.87173 0.96350 1.22383 0.93862 1.00363 0.99003 1.20252 0.93794 0.93862 1.02599 1.18175 0.86984 0.83542 0.77076 1.90751 1.13398 1.87027 1.49100 1.46083 1.11236 1.05575 1.73770 1.20204 0.92983 0.79310 1.03003 1.19618 1.00644 0.99231 0.93922 1.21022 0.97373 0.96967 0.96286 1.21100 0.96373 0.95445 0.99480 1.20556 0.96242 0.95683 0.92768 1.19256 0.89917 0.87935 0.93550 0.92598 1.22420 0.99178 1.00297 1.00060 1.42524 1.59280 1.07699 1.26853 1.19237 1.24422 0.86300 1.07204 0.91055 1.24749 1.00220 0.98347 0.97546 1.69654 1.38947 1.35136 1.14246 0.86179 0.78148 0.85013 0.76772 1.21693 1.21752 1.20726 1.21024 0.98447 0.97437 0.97093 1.20927 0.96868 0.96610 0.97600 0.90292 0.91775 0.88572 0.82083 0.82026 0.84203 0.76209 0.90509 0.90438 0.86299 0.85322 0.93323 0.94346 0.92350 0.77995 0.93429 0.86069 0.86459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 8.84 36.01 0.32 -0.62 16 2 C -0.08 -0.67 5.93 -104.06 -0.62 -1.29 16 3 C 0.09 0.74 10.83 -17.59 -0.19 0.55 16 4 N -0.47 -4.23 10.34 -13.30 -0.14 -4.37 16 5 C 0.09 0.64 11.17 -17.59 -0.20 0.45 16 6 C -0.14 -0.98 9.60 -39.03 -0.37 -1.35 16 7 C -0.09 -0.86 5.91 -104.65 -0.62 -1.47 16 8 C 0.56 5.83 7.74 -12.19 -0.09 5.74 16 9 O -0.53 -6.86 13.53 5.35 0.07 -6.79 16 10 N -0.71 -6.51 5.51 -62.33 -0.34 -6.85 16 11 C 0.17 1.72 5.80 -5.19 -0.03 1.69 16 12 C -0.13 -1.56 5.25 -104.62 -0.55 -2.11 16 13 C -0.10 -1.29 9.70 -39.59 -0.38 -1.67 16 14 C -0.11 -1.68 9.06 -39.58 -0.36 -2.04 16 15 C -0.05 -0.84 4.95 -104.62 -0.52 -1.36 16 16 C 0.20 3.88 3.09 -69.09 -0.21 3.67 16 17 H 0.06 1.08 7.94 -51.93 -0.41 0.67 16 18 C -0.16 -2.74 9.47 37.16 0.35 -2.39 16 19 N -0.72 -17.44 5.07 -54.55 -0.28 -17.72 16 20 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 21 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 22 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -27.58 13.06 55.49 0.72 -26.85 16 24 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 C -0.12 -1.68 9.67 -39.59 -0.38 -2.06 16 29 C -0.10 -1.20 9.70 -39.58 -0.38 -1.59 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.37 8.05 -51.93 -0.42 -0.05 16 32 H 0.10 0.96 5.95 -51.93 -0.31 0.65 16 33 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.16 0.77 8.06 -52.48 -0.42 0.35 16 35 H 0.14 0.67 6.58 -52.48 -0.35 0.33 16 36 H 0.40 2.96 6.64 -40.82 -0.27 2.69 16 37 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 38 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 39 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 40 H 0.13 2.22 6.92 -52.49 -0.36 1.86 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.38 9.82 6.06 -40.82 -0.25 9.57 16 45 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.12 1.49 8.04 -52.48 -0.42 1.07 16 47 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 393.82 15.07 5.93 5.93 Total: -1.00 -32.17 393.82 -10.09 -42.27 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -6.56 Total: 10.34 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -4.49 Total: -12.94 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: -0.03 Total: -55.79 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: 0.07 Total: -6.79 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.17 -10.09 -42.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724747920.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.400 kcal (2) G-P(sol) polarization free energy of solvation -32.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds