Wall clock time and date at job start Tue Mar 31 2020 23:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38172 * 120.49609 * 2 1 4 4 N 1.31799 * 120.89270 * 180.02562 * 3 2 1 5 5 C 1.31831 * 122.04657 * 359.97438 * 4 3 2 6 6 C 1.38125 * 120.90120 * 0.02562 * 5 4 3 7 7 C 1.39794 * 120.50174 * 180.02562 * 2 1 3 8 8 C 1.48151 * 120.92200 * 0.02562 * 7 2 1 9 9 O 1.21520 * 120.00018 * 353.89927 * 8 7 2 10 10 N 1.34773 * 120.00194 * 173.90280 * 8 7 2 11 11 C 1.46503 * 120.00087 * 180.02562 * 10 8 7 12 12 C 1.50705 * 109.47045 * 179.97438 * 11 10 8 13 13 C 1.38236 * 119.99883 * 269.72393 * 12 11 10 14 14 C 1.38229 * 119.99583 * 179.76380 * 13 12 11 15 15 C 1.38241 * 120.00441 * 0.51174 * 14 13 12 16 16 C 1.50700 * 120.00053 * 179.72416 * 15 14 13 17 17 H 1.09000 * 109.46378 * 200.02203 * 16 15 14 18 18 C 1.52999 * 109.47304 * 80.01915 * 16 15 14 19 19 N 1.46493 * 109.46926 * 320.01500 * 16 15 14 20 20 C 1.36946 * 120.00307 * 205.00154 * 19 16 15 21 21 H 1.08005 * 119.99348 * 0.02562 * 20 19 16 22 22 C 1.38807 * 120.00441 * 180.02562 * 20 19 16 23 23 N 1.31622 * 119.99988 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00056 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46758 * 90.00122 * 24 22 20 26 26 H 1.48498 * 109.47538 * 210.00189 * 24 22 20 27 27 H 1.48497 * 109.47227 * 330.00404 * 24 22 20 28 28 C 1.38235 * 119.99435 * 359.74096 * 15 14 13 29 29 C 1.38229 * 120.00397 * 0.02562 * 28 15 14 30 30 H 1.09001 * 109.46982 * 263.64564 * 1 2 3 31 31 H 1.08993 * 109.47215 * 23.64814 * 1 2 3 32 32 H 1.08997 * 109.46828 * 143.64974 * 1 2 3 33 33 H 1.07996 * 119.55522 * 0.03793 * 3 2 1 34 34 H 1.08003 * 119.55145 * 179.97438 * 5 4 3 35 35 H 1.08003 * 120.49908 * 179.97438 * 6 5 4 36 36 H 0.96998 * 119.99972 * 359.97438 * 10 8 7 37 37 H 1.08998 * 109.46506 * 299.99636 * 11 10 8 38 38 H 1.08995 * 109.47436 * 59.99740 * 11 10 8 39 39 H 1.07993 * 120.00005 * 0.02562 * 13 12 11 40 40 H 1.08001 * 119.99930 * 180.23107 * 14 13 12 41 41 H 1.08992 * 109.46948 * 299.99956 * 18 16 15 42 42 H 1.09004 * 109.46687 * 59.99903 * 18 16 15 43 43 H 1.08994 * 109.46982 * 179.97438 * 18 16 15 44 44 H 0.97006 * 120.00190 * 25.01004 * 19 16 15 45 45 H 0.96996 * 120.00353 * 179.97438 * 23 22 20 46 46 H 1.08007 * 119.99645 * 179.97438 * 28 15 14 47 47 H 1.08000 * 120.00581 * 179.97438 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.1906 0.0000 4 7 3.5262 1.1997 -0.0005 5 6 4.2334 0.0871 -0.0005 6 6 3.6137 -1.1473 -0.0006 7 6 2.2166 -1.2045 -0.0005 8 6 1.5079 -2.5055 -0.0017 9 8 0.2983 -2.5387 0.1097 10 7 2.2048 -3.6524 -0.1262 11 6 1.5040 -4.9389 -0.1279 12 6 2.5044 -6.0557 -0.2797 13 6 2.8477 -6.5096 -1.5394 14 6 3.7690 -7.5307 -1.6788 15 6 4.3391 -8.1051 -0.5580 16 6 5.3388 -9.2225 -0.7099 17 1 5.4085 -9.7771 0.2259 18 6 6.7086 -8.6373 -1.0593 19 7 4.9051 -10.1235 -1.7804 20 6 5.3161 -11.4299 -1.7844 21 1 5.9595 -11.7959 -0.9980 22 6 4.9056 -12.2835 -2.7991 23 7 4.1218 -11.8373 -3.7577 24 14 5.4667 -14.0652 -2.8048 25 1 4.4912 -14.8937 -2.0517 26 1 5.5533 -14.5525 -4.2049 27 1 6.8017 -14.1658 -2.1623 28 6 3.9918 -7.6547 0.7019 29 6 3.0741 -6.6303 0.8411 30 1 -0.3633 -0.1137 1.0214 31 1 -0.3633 0.9413 -0.4122 32 1 -0.3633 -0.8277 -0.6091 33 1 1.6691 2.1263 0.0006 34 1 5.3121 0.1416 -0.0014 35 1 4.1995 -2.0547 -0.0010 36 1 3.1703 -3.6259 -0.2154 37 1 0.9639 -5.0595 0.8112 38 1 0.7991 -4.9676 -0.9587 39 1 2.3993 -6.0636 -2.4148 40 1 4.0400 -7.8828 -2.6631 41 1 6.6388 -8.0827 -1.9949 42 1 7.0312 -7.9669 -0.2626 43 1 7.4317 -9.4455 -1.1686 44 1 4.3270 -9.7948 -2.4866 45 1 3.8353 -12.4337 -4.4670 46 1 4.4369 -8.1037 1.5775 47 1 2.8025 -6.2787 1.8255 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724747920.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:17 Heat of formation + Delta-G solvation = 13.932150 kcal Electronic energy + Delta-G solvation = -27501.651994 eV Core-core repulsion = 23648.488366 eV Total energy + Delta-G solvation = -3853.163628 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -41.80777 -40.68585 -39.92683 -37.47346 -35.97203 -34.41710 -34.23224 -33.19527 -31.90667 -31.56350 -30.04381 -28.47905 -27.21728 -25.94267 -25.31049 -23.83573 -23.32181 -22.78181 -21.87900 -21.09963 -19.42248 -19.25150 -17.91029 -17.27593 -16.88544 -16.67755 -16.51335 -16.26784 -16.22873 -15.96097 -15.69478 -15.17716 -15.03678 -14.88858 -14.60262 -14.43521 -14.31760 -14.25107 -13.85863 -13.71829 -13.53469 -13.43168 -13.29498 -12.97020 -12.79447 -12.71144 -12.52104 -12.46741 -12.14990 -12.01796 -11.60430 -11.53345 -11.34766 -11.00673 -10.92889 -10.40427 -10.20277 -9.92408 -9.79187 -9.55235 -9.02524 -7.94566 -5.22829 -0.34886 0.07004 0.29492 0.53180 1.47182 1.48420 1.56675 1.79060 2.04794 2.55761 2.79780 2.90167 3.40006 3.47365 3.51864 3.64019 3.78396 3.82036 3.87428 3.96999 3.98962 4.04294 4.15958 4.35067 4.42088 4.54022 4.59495 4.60031 4.67606 4.75738 4.77931 4.79149 4.79982 4.84118 5.01575 5.06900 5.08006 5.12414 5.22473 5.22687 5.41992 5.43120 5.50415 5.56321 5.62526 5.62651 5.84375 6.09552 6.27916 6.38820 6.89688 7.03929 7.33993 8.09179 8.32551 9.28960 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023680 B = 0.001869 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.131648 B =14978.132119 C =15457.960344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.089 4.089 3 C 0.089 3.911 4 N -0.487 5.487 5 C 0.082 3.918 6 C -0.129 4.129 7 C -0.111 4.111 8 C 0.556 3.444 9 O -0.556 6.556 10 N -0.705 5.705 11 C 0.173 3.827 12 C -0.117 4.117 13 C -0.098 4.098 14 C -0.124 4.124 15 C -0.072 4.072 16 C 0.198 3.802 17 H 0.054 0.946 18 C -0.148 4.148 19 N -0.735 5.735 20 C -0.237 4.237 21 H 0.078 0.922 22 C -0.078 4.078 23 N -0.970 5.970 24 Si 0.972 3.028 25 H -0.289 1.289 26 H -0.297 1.297 27 H -0.268 1.268 28 C -0.121 4.121 29 C -0.091 4.091 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.183 0.817 34 H 0.188 0.812 35 H 0.164 0.836 36 H 0.412 0.588 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.131 0.869 40 H 0.103 0.897 41 H 0.041 0.959 42 H 0.071 0.929 43 H 0.041 0.959 44 H 0.374 0.626 45 H 0.250 0.750 46 H 0.138 0.862 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.146 25.911 10.969 28.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.091 4.091 3 C -0.068 4.068 4 N -0.196 5.196 5 C -0.074 4.074 6 C -0.149 4.149 7 C -0.122 4.122 8 C 0.343 3.657 9 O -0.435 6.435 10 N -0.357 5.357 11 C 0.050 3.950 12 C -0.117 4.117 13 C -0.116 4.116 14 C -0.142 4.142 15 C -0.073 4.073 16 C 0.090 3.910 17 H 0.072 0.928 18 C -0.208 4.208 19 N -0.376 5.376 20 C -0.369 4.369 21 H 0.095 0.905 22 C -0.270 4.270 23 N -0.621 5.621 24 Si 0.801 3.199 25 H -0.216 1.216 26 H -0.224 1.224 27 H -0.193 1.193 28 C -0.139 4.139 29 C -0.110 4.110 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.200 0.800 34 H 0.205 0.795 35 H 0.182 0.818 36 H 0.250 0.750 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.149 0.851 40 H 0.121 0.879 41 H 0.060 0.940 42 H 0.090 0.910 43 H 0.060 0.940 44 H 0.207 0.793 45 H 0.059 0.941 46 H 0.156 0.844 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.468 26.479 11.108 28.820 hybrid contribution 0.054 -2.173 -0.892 2.350 sum -2.413 24.306 10.216 26.476 Atomic orbital electron populations 1.20917 0.88795 1.03802 1.03366 1.21296 0.98797 0.92759 0.96298 1.23094 0.89690 0.98044 0.96015 1.67607 1.08831 1.32803 1.10352 1.23227 1.01924 0.86822 0.95437 1.22618 0.93124 1.01399 0.97793 1.20291 0.94740 0.93226 1.03896 1.18393 0.86668 0.84175 0.76430 1.90744 1.14739 1.87472 1.50587 1.45929 1.11685 1.04847 1.73242 1.20098 0.92475 0.79217 1.03181 1.19716 0.99853 0.98908 0.93236 1.21124 0.96637 0.96195 0.97669 1.20966 0.97984 0.96916 0.98355 1.20330 0.96914 0.95941 0.94161 1.19436 0.91587 0.88267 0.91727 0.92784 1.22248 0.97505 1.00102 1.00938 1.42736 1.59198 1.07657 1.28059 1.19636 1.23155 0.87530 1.06583 0.90455 1.25541 1.01306 1.02333 0.97785 1.69814 1.40964 1.36186 1.15124 0.85163 0.78156 0.80352 0.76243 1.21619 1.22425 1.19306 1.21195 0.98635 0.97754 0.96350 1.21222 0.95440 0.95349 0.98950 0.90701 0.89615 0.90713 0.80008 0.79504 0.81808 0.75002 0.89943 0.90893 0.85104 0.87906 0.94031 0.90982 0.93997 0.79252 0.94131 0.84421 0.83425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.72 8.84 71.24 0.63 -1.09 16 2 C -0.09 -1.45 5.93 -19.50 -0.12 -1.56 16 3 C 0.09 1.29 10.83 84.68 0.92 2.20 16 4 N -0.49 -7.93 10.34 -196.01 -2.03 -9.96 16 5 C 0.08 1.02 11.17 84.67 0.95 1.96 16 6 C -0.13 -1.55 9.60 22.63 0.22 -1.33 16 7 C -0.11 -1.85 5.91 -19.88 -0.12 -1.97 16 8 C 0.56 10.90 7.74 86.88 0.67 11.57 16 9 O -0.56 -14.21 13.53 -3.78 -0.05 -14.26 16 10 N -0.70 -11.22 5.51 -469.40 -2.58 -13.80 16 11 C 0.17 3.15 5.80 85.63 0.50 3.65 16 12 C -0.12 -2.43 5.25 -19.86 -0.10 -2.54 16 13 C -0.10 -2.47 9.70 22.27 0.22 -2.26 16 14 C -0.12 -3.96 9.06 22.27 0.20 -3.76 16 15 C -0.07 -2.33 4.95 -19.86 -0.10 -2.42 16 16 C 0.20 7.53 3.09 44.25 0.14 7.67 16 17 H 0.05 2.05 7.94 -2.39 -0.02 2.04 16 18 C -0.15 -5.01 9.47 71.98 0.68 -4.32 16 19 N -0.74 -36.37 5.07 -326.51 -1.66 -38.02 16 20 C -0.24 -12.96 9.93 84.03 0.83 -12.12 16 21 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 22 C -0.08 -4.42 5.50 84.86 0.47 -3.96 16 23 N -0.97 -59.14 13.06 21.65 0.28 -58.85 16 24 Si 0.97 45.86 29.55 68.60 2.03 47.89 16 25 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 26 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 27 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 28 C -0.12 -3.04 9.67 22.27 0.22 -2.83 16 29 C -0.09 -1.86 9.70 22.27 0.22 -1.65 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.09 0.87 8.05 -2.39 -0.02 0.85 16 32 H 0.07 1.50 5.95 -2.39 -0.01 1.48 16 33 H 0.18 1.64 8.06 -2.91 -0.02 1.61 16 34 H 0.19 1.21 8.06 -2.91 -0.02 1.18 16 35 H 0.16 1.03 6.58 -2.91 -0.02 1.01 16 36 H 0.41 4.86 6.64 -92.71 -0.62 4.24 16 37 H 0.08 1.48 8.09 -2.39 -0.02 1.46 16 38 H 0.07 1.45 8.08 -2.39 -0.02 1.43 16 39 H 0.13 2.93 8.06 -2.91 -0.02 2.91 16 40 H 0.10 3.78 6.92 -2.91 -0.02 3.76 16 41 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 43 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.37 19.89 6.06 -92.70 -0.56 19.33 16 45 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 46 H 0.14 2.97 8.04 -2.91 -0.02 2.94 16 47 H 0.15 2.19 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -70.99 393.82 2.23 -68.76 By element: Atomic # 1 Polarization: 33.16 SS G_CDS: -0.18 Total: 32.99 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: 6.41 Total: -14.74 kcal Atomic # 7 Polarization: -114.65 SS G_CDS: -5.98 Total: -120.63 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.05 Total: -14.26 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -70.99 2.23 -68.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724747920.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.689 kcal (2) G-P(sol) polarization free energy of solvation -70.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds