Wall clock time and date at job start Tue Mar 31 2020 23:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35563 * 125.82296 * 2 1 4 4 N 1.35407 * 107.16263 * 179.97438 * 3 2 1 5 5 H 0.97000 * 126.44011 * 179.97438 * 4 3 2 6 6 C 1.36669 * 107.11848 * 0.02562 * 4 3 2 7 7 C 1.47407 * 125.86161 * 180.02562 * 6 4 3 8 8 O 1.21601 * 120.00017 * 353.92619 * 7 6 4 9 9 N 1.34775 * 119.99901 * 173.65636 * 7 6 4 10 10 C 1.46503 * 120.00124 * 354.73538 * 9 7 6 11 11 C 1.46500 * 120.00199 * 174.73866 * 9 7 6 12 12 C 1.52995 * 109.47030 * 89.99804 * 11 9 7 13 13 H 1.09001 * 109.47395 * 304.99760 * 12 11 9 14 14 O 1.42900 * 109.47502 * 65.00396 * 12 11 9 15 15 C 1.52999 * 109.47018 * 185.00342 * 12 11 9 16 16 N 1.46910 * 109.47417 * 180.02562 * 15 12 11 17 17 C 1.46895 * 110.99976 * 179.97438 * 16 15 12 18 18 C 1.50704 * 109.46764 * 179.97438 * 17 16 15 19 19 O 1.21297 * 119.99946 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99948 * 179.97438 * 18 17 16 21 21 C 1.37098 * 120.00019 * 179.97438 * 20 18 17 22 22 H 1.07997 * 119.99971 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00132 * 179.97438 * 21 20 18 24 24 N 1.31417 * 119.99703 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00040 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47278 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.46434 * 120.00573 * 25 23 21 28 28 H 1.48501 * 109.47083 * 240.00178 * 25 23 21 29 29 N 1.31619 * 108.26945 * 0.25630 * 6 4 3 30 30 H 1.08999 * 109.46799 * 89.99839 * 1 2 3 31 31 H 1.08995 * 109.47094 * 209.99690 * 1 2 3 32 32 H 1.08995 * 109.47110 * 329.99769 * 1 2 3 33 33 H 1.08005 * 126.42052 * 0.02562 * 3 2 1 34 34 H 1.09004 * 109.46952 * 85.29715 * 10 9 7 35 35 H 1.08996 * 109.47394 * 205.29937 * 10 9 7 36 36 H 1.09004 * 109.47032 * 325.30462 * 10 9 7 37 37 H 1.08999 * 109.47245 * 209.99939 * 11 9 7 38 38 H 1.08999 * 109.46783 * 330.00208 * 11 9 7 39 39 H 0.96695 * 114.00045 * 59.99600 * 14 12 11 40 40 H 1.09002 * 109.47356 * 299.99457 * 15 12 11 41 41 H 1.08999 * 109.47423 * 60.00180 * 15 12 11 42 42 H 1.00895 * 110.99653 * 56.03687 * 16 15 12 43 43 H 1.08997 * 109.47574 * 299.99494 * 17 16 15 44 44 H 1.08996 * 109.47039 * 59.99953 * 17 16 15 45 45 H 0.97006 * 119.99967 * 0.02562 * 20 18 17 46 46 H 0.97005 * 119.99826 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3005 1.0992 0.0000 4 7 3.5833 0.6659 0.0006 5 1 4.3789 1.2209 0.0004 6 6 3.5466 -0.7003 0.0003 7 6 4.7175 -1.5956 0.0013 8 8 5.8367 -1.1331 -0.1090 9 7 4.5481 -2.9265 0.1299 10 6 3.2131 -3.4738 0.3842 11 6 5.6988 -3.8259 0.0156 12 6 6.3254 -4.0305 1.3963 13 1 6.5725 -3.0616 1.8303 14 8 5.3975 -4.7098 2.2446 15 6 7.5987 -4.8676 1.2595 16 7 8.2001 -5.0646 2.5853 17 6 9.4273 -5.8666 2.4928 18 6 10.0146 -6.0466 3.8690 19 8 9.4651 -5.5547 4.8320 20 7 11.1504 -6.7541 4.0296 21 6 11.6850 -6.9174 5.2815 22 1 11.1957 -6.4794 6.1389 23 6 12.8557 -7.6473 5.4472 24 7 13.4507 -8.1806 4.4039 25 14 13.5837 -7.8704 7.1531 26 1 12.7292 -7.1774 8.1504 27 1 13.6485 -9.3180 7.4779 28 1 14.9517 -7.2937 7.1867 29 7 2.2861 -1.0791 -0.0060 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5138 33 1 1.9711 2.1278 0.0004 34 1 2.6894 -3.6086 -0.5623 35 1 3.3047 -4.4354 0.8890 36 1 2.6518 -2.7843 1.0149 37 1 5.3709 -4.7869 -0.3806 38 1 6.4365 -3.3883 -0.6570 39 1 5.1326 -5.5811 1.9196 40 1 7.3517 -5.8365 0.8255 41 1 8.3065 -4.3495 0.6125 42 1 7.5406 -5.4853 3.2225 43 1 9.1926 -6.8422 2.0671 44 1 10.1480 -5.3555 1.8545 45 1 11.5901 -7.1472 3.2594 46 1 14.2682 -8.6898 4.5196 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725709846.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:17 Heat of formation + Delta-G solvation = -50.728228 kcal Electronic energy + Delta-G solvation = -28505.680179 eV Core-core repulsion = 24238.863404 eV Total energy + Delta-G solvation = -4266.816776 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.71042 -40.01832 -38.42286 -37.75546 -35.70521 -34.67371 -33.74091 -33.61640 -31.94995 -31.20263 -30.50221 -27.94036 -27.44040 -26.50909 -25.17155 -23.77641 -22.73166 -21.73014 -20.74878 -20.32610 -19.22460 -18.35258 -17.87044 -17.12766 -16.85491 -16.51589 -16.01688 -15.98723 -15.65607 -15.27250 -14.78451 -14.49880 -14.44372 -14.32515 -14.09501 -13.74673 -13.46822 -13.39706 -13.28918 -13.04675 -12.84973 -12.78603 -12.62432 -12.46626 -11.96557 -11.73688 -11.54993 -11.48824 -11.17173 -11.01594 -10.69413 -10.56359 -10.52158 -10.31849 -10.20869 -10.17203 -9.49027 -9.00110 -8.75036 -8.40683 -8.02069 -7.92485 -6.39014 -3.79566 0.96958 2.10856 2.15438 2.97367 3.02504 3.18644 3.28925 3.36777 3.74483 3.94207 4.03776 4.23142 4.32908 4.42873 4.59798 4.76342 4.78192 4.90805 4.97970 5.10559 5.12824 5.26045 5.28216 5.29726 5.31577 5.35996 5.48285 5.52186 5.53460 5.65232 5.78296 5.81440 5.98077 6.00647 6.13874 6.25830 6.29655 6.70402 6.90797 7.22457 7.34005 7.52948 7.58367 7.74285 7.74906 8.09927 8.64726 9.21190 9.57591 10.09478 10.78901 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029784 B = 0.001625 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.864513 B =17229.308720 C =17324.983581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.006 4.006 3 C -0.023 4.023 4 N -0.523 5.523 5 H 0.431 0.569 6 C 0.152 3.848 7 C 0.602 3.398 8 O -0.539 6.539 9 N -0.582 5.582 10 C 0.086 3.914 11 C 0.087 3.913 12 C 0.095 3.905 13 H 0.113 0.887 14 O -0.550 6.550 15 C 0.031 3.969 16 N -0.663 5.663 17 C 0.051 3.949 18 C 0.441 3.559 19 O -0.581 6.581 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.104 0.896 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 N -0.435 5.435 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.186 0.814 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.367 0.633 40 H 0.029 0.971 41 H 0.081 0.919 42 H 0.356 0.644 43 H 0.042 0.958 44 H 0.085 0.915 45 H 0.392 0.608 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.926 13.185 -15.976 32.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.139 4.139 3 C -0.162 4.162 4 N -0.125 5.125 5 H 0.271 0.729 6 C -0.109 4.109 7 C 0.387 3.613 8 O -0.415 6.415 9 N -0.313 5.313 10 C -0.056 4.056 11 C -0.036 4.036 12 C 0.034 3.966 13 H 0.130 0.870 14 O -0.354 6.354 15 C -0.099 4.099 16 N -0.297 5.297 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.464 6.464 20 N -0.202 5.202 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 N -0.159 5.159 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.203 0.797 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.105 0.895 38 H 0.114 0.886 39 H 0.213 0.787 40 H 0.048 0.952 41 H 0.100 0.900 42 H 0.176 0.824 43 H 0.060 0.940 44 H 0.104 0.896 45 H 0.225 0.775 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -24.362 13.918 -15.039 31.833 hybrid contribution 1.028 -0.633 -0.306 1.246 sum -23.333 13.284 -15.345 30.925 Atomic orbital electron populations 1.20059 0.86950 1.03069 1.02461 1.21006 0.97120 0.88154 1.07657 1.22765 0.82955 1.01138 1.09355 1.42893 1.09302 1.07541 1.52753 0.72917 1.22544 0.93755 0.82277 1.12347 1.16538 0.85510 0.81863 0.77369 1.90870 1.23947 1.75521 1.51211 1.47307 1.10026 1.04680 1.69313 1.22100 0.81652 1.00047 1.01825 1.22286 0.88660 0.93996 0.98646 1.22425 0.87068 0.97416 0.89676 0.86964 1.86715 1.63764 1.34383 1.50567 1.22563 0.96418 0.98318 0.92648 1.59952 1.07460 1.53943 1.08358 1.21684 0.93268 0.95826 0.97421 1.19817 0.83690 0.83984 0.89863 1.90538 1.62405 1.52249 1.41256 1.41867 1.21790 1.46622 1.09915 1.19768 1.06222 1.30724 0.86058 0.87864 1.25260 0.96713 0.96745 0.99286 1.69627 1.19692 1.35456 1.29649 0.85795 0.78743 0.77917 0.81858 1.19220 1.20797 1.20762 1.70350 0.99112 1.30224 1.16205 0.91213 0.90834 0.91098 0.79705 0.92349 0.91146 0.88944 0.89498 0.88574 0.78661 0.95245 0.90018 0.82364 0.93977 0.89648 0.77486 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.42 36.01 0.38 0.05 16 2 C -0.01 -0.04 7.07 -83.00 -0.59 -0.63 16 3 C -0.02 -0.14 11.91 -16.93 -0.20 -0.35 16 4 N -0.52 -4.16 6.15 -10.78 -0.07 -4.22 16 5 H 0.43 2.64 8.96 -40.82 -0.37 2.28 16 6 C 0.15 1.61 7.59 -154.52 -1.17 0.44 16 7 C 0.60 7.26 7.66 -12.53 -0.10 7.17 16 8 O -0.54 -7.81 16.73 5.28 0.09 -7.72 16 9 N -0.58 -5.91 2.84 -182.86 -0.52 -6.43 16 10 C 0.09 0.72 9.08 59.85 0.54 1.26 16 11 C 0.09 0.79 5.00 -4.04 -0.02 0.77 16 12 C 0.09 1.08 3.48 -26.73 -0.09 0.99 16 13 H 0.11 1.67 8.14 -51.93 -0.42 1.24 16 14 O -0.55 -6.24 11.59 -35.23 -0.41 -6.64 16 15 C 0.03 0.38 5.39 -3.82 -0.02 0.36 16 16 N -0.66 -11.29 6.13 -115.05 -0.70 -11.99 16 17 C 0.05 0.92 6.17 -4.98 -0.03 0.89 16 18 C 0.44 10.78 7.82 -10.98 -0.09 10.70 16 19 O -0.58 -16.43 15.78 5.54 0.09 -16.34 16 20 N -0.57 -14.67 5.29 -10.96 -0.06 -14.73 16 21 C -0.30 -8.51 9.68 -14.93 -0.14 -8.65 16 22 H 0.10 3.10 7.16 -52.49 -0.38 2.72 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.89 13.05 55.50 0.72 -24.17 16 25 Si 0.93 21.41 29.55 -169.99 -5.02 16.39 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 29 N -0.43 -4.34 7.94 -7.50 -0.06 -4.40 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.19 0.44 8.06 -52.48 -0.42 0.02 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.49 7.21 -51.93 -0.37 0.11 16 36 H 0.09 0.89 5.89 -51.93 -0.31 0.59 16 37 H 0.09 0.55 8.07 -51.93 -0.42 0.13 16 38 H 0.10 0.93 7.50 -51.93 -0.39 0.54 16 39 H 0.37 2.68 9.04 45.56 0.41 3.09 16 40 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 41 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.36 6.39 7.82 -39.29 -0.31 6.08 16 43 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 45 H 0.39 9.68 7.90 -40.82 -0.32 9.35 16 46 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 392.32 15.07 5.91 5.91 Total: -1.00 -36.96 392.32 -7.47 -44.42 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: -5.81 Total: 16.44 kcal Atomic # 6 Polarization: 15.11 SS G_CDS: -1.63 Total: 13.48 kcal Atomic # 7 Polarization: -65.26 SS G_CDS: -0.68 Total: -65.94 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -0.23 Total: -30.71 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.96 -7.47 -44.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725709846.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.304 kcal (2) G-P(sol) polarization free energy of solvation -36.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds