Wall clock time and date at job start Tue Mar 31 2020 23:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35563 * 125.82296 * 2 1 4 4 N 1.35407 * 107.16263 * 179.97438 * 3 2 1 5 5 H 0.97000 * 126.44011 * 179.97438 * 4 3 2 6 6 C 1.36669 * 107.11848 * 0.02562 * 4 3 2 7 7 C 1.47407 * 125.86161 * 180.02562 * 6 4 3 8 8 O 1.21601 * 120.00017 * 353.92619 * 7 6 4 9 9 N 1.34775 * 119.99901 * 173.65636 * 7 6 4 10 10 C 1.46503 * 120.00124 * 354.73538 * 9 7 6 11 11 C 1.46500 * 120.00199 * 174.73866 * 9 7 6 12 12 C 1.52995 * 109.47030 * 89.99804 * 11 9 7 13 13 H 1.09001 * 109.47395 * 304.99760 * 12 11 9 14 14 O 1.42900 * 109.47502 * 65.00396 * 12 11 9 15 15 C 1.52999 * 109.47018 * 185.00342 * 12 11 9 16 16 N 1.46910 * 109.47417 * 180.02562 * 15 12 11 17 17 C 1.46895 * 110.99976 * 179.97438 * 16 15 12 18 18 C 1.50704 * 109.46764 * 179.97438 * 17 16 15 19 19 O 1.21297 * 119.99946 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99948 * 179.97438 * 18 17 16 21 21 C 1.37098 * 120.00019 * 179.97438 * 20 18 17 22 22 H 1.07997 * 119.99971 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00132 * 179.97438 * 21 20 18 24 24 N 1.31417 * 119.99703 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00040 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47278 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.46434 * 120.00573 * 25 23 21 28 28 H 1.48501 * 109.47083 * 240.00178 * 25 23 21 29 29 N 1.31619 * 108.26945 * 0.25630 * 6 4 3 30 30 H 1.08999 * 109.46799 * 89.99839 * 1 2 3 31 31 H 1.08995 * 109.47094 * 209.99690 * 1 2 3 32 32 H 1.08995 * 109.47110 * 329.99769 * 1 2 3 33 33 H 1.08005 * 126.42052 * 0.02562 * 3 2 1 34 34 H 1.09004 * 109.46952 * 85.29715 * 10 9 7 35 35 H 1.08996 * 109.47394 * 205.29937 * 10 9 7 36 36 H 1.09004 * 109.47032 * 325.30462 * 10 9 7 37 37 H 1.08999 * 109.47245 * 209.99939 * 11 9 7 38 38 H 1.08999 * 109.46783 * 330.00208 * 11 9 7 39 39 H 0.96695 * 114.00045 * 59.99600 * 14 12 11 40 40 H 1.09002 * 109.47356 * 299.99457 * 15 12 11 41 41 H 1.08999 * 109.47423 * 60.00180 * 15 12 11 42 42 H 1.00895 * 110.99653 * 56.03687 * 16 15 12 43 43 H 1.08997 * 109.47574 * 299.99494 * 17 16 15 44 44 H 1.08996 * 109.47039 * 59.99953 * 17 16 15 45 45 H 0.97006 * 119.99967 * 0.02562 * 20 18 17 46 46 H 0.97005 * 119.99826 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3005 1.0992 0.0000 4 7 3.5833 0.6659 0.0006 5 1 4.3789 1.2209 0.0004 6 6 3.5466 -0.7003 0.0003 7 6 4.7175 -1.5956 0.0013 8 8 5.8367 -1.1331 -0.1090 9 7 4.5481 -2.9265 0.1299 10 6 3.2131 -3.4738 0.3842 11 6 5.6988 -3.8259 0.0156 12 6 6.3254 -4.0305 1.3963 13 1 6.5725 -3.0616 1.8303 14 8 5.3975 -4.7098 2.2446 15 6 7.5987 -4.8676 1.2595 16 7 8.2001 -5.0646 2.5853 17 6 9.4273 -5.8666 2.4928 18 6 10.0146 -6.0466 3.8690 19 8 9.4651 -5.5547 4.8320 20 7 11.1504 -6.7541 4.0296 21 6 11.6850 -6.9174 5.2815 22 1 11.1957 -6.4794 6.1389 23 6 12.8557 -7.6473 5.4472 24 7 13.4507 -8.1806 4.4039 25 14 13.5837 -7.8704 7.1531 26 1 12.7292 -7.1774 8.1504 27 1 13.6485 -9.3180 7.4779 28 1 14.9517 -7.2937 7.1867 29 7 2.2861 -1.0791 -0.0060 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5138 33 1 1.9711 2.1278 0.0004 34 1 2.6894 -3.6086 -0.5623 35 1 3.3047 -4.4354 0.8890 36 1 2.6518 -2.7843 1.0149 37 1 5.3709 -4.7869 -0.3806 38 1 6.4365 -3.3883 -0.6570 39 1 5.1326 -5.5811 1.9196 40 1 7.3517 -5.8365 0.8255 41 1 8.3065 -4.3495 0.6125 42 1 7.5406 -5.4853 3.2225 43 1 9.1926 -6.8422 2.0671 44 1 10.1480 -5.3555 1.8545 45 1 11.5901 -7.1472 3.2594 46 1 14.2682 -8.6898 4.5196 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725709846.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:16 Heat of formation + Delta-G solvation = -82.672896 kcal Electronic energy + Delta-G solvation = -28507.065404 eV Core-core repulsion = 24238.863404 eV Total energy + Delta-G solvation = -4268.202000 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.32459 -40.85851 -40.17423 -38.88311 -36.66178 -36.11767 -35.53511 -34.19923 -33.28327 -32.60419 -31.40053 -29.03872 -28.16134 -27.44998 -26.58212 -25.11788 -23.60315 -22.66851 -21.32916 -21.13283 -21.00460 -19.92940 -19.06301 -18.25082 -17.71324 -17.41759 -17.30249 -16.92245 -16.78816 -16.47507 -16.18549 -15.98019 -15.69743 -15.16481 -15.02076 -14.97057 -14.83014 -14.29679 -14.13753 -14.01499 -13.74851 -13.55308 -13.50354 -13.40108 -13.18973 -13.02162 -12.94977 -12.77626 -12.59986 -12.42018 -12.12522 -12.10584 -11.57077 -11.52901 -11.35310 -11.20317 -10.89607 -10.37038 -10.02765 -9.75558 -9.36157 -9.30263 -8.48043 -5.96915 0.27021 1.35824 1.41007 1.44471 1.54337 1.55604 2.03588 2.23366 2.28475 2.37429 2.88161 3.09660 3.19033 3.42882 3.53788 3.82142 3.91003 4.03043 4.11864 4.13110 4.29583 4.37310 4.38339 4.43304 4.47999 4.54800 4.64445 4.74972 4.83228 4.87330 4.98108 4.98748 5.06433 5.09062 5.20873 5.39928 5.43748 5.69600 5.87295 6.09204 6.12971 6.15175 6.41000 6.59115 6.68124 6.87888 6.96569 7.11505 7.54611 8.10632 8.69540 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029784 B = 0.001625 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.864513 B =17229.308720 C =17324.983581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.031 4.031 3 C -0.001 4.001 4 N -0.521 5.521 5 H 0.437 0.563 6 C 0.112 3.888 7 C 0.592 3.408 8 O -0.577 6.577 9 N -0.581 5.581 10 C 0.091 3.909 11 C 0.092 3.908 12 C 0.107 3.893 13 H 0.070 0.930 14 O -0.566 6.566 15 C 0.035 3.965 16 N -0.687 5.687 17 C 0.066 3.934 18 C 0.435 3.565 19 O -0.626 6.626 20 N -0.572 5.572 21 C -0.336 4.336 22 H 0.077 0.923 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.994 3.006 26 H -0.275 1.275 27 H -0.268 1.268 28 H -0.270 1.270 29 N -0.443 5.443 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.228 0.772 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.125 0.875 38 H 0.090 0.910 39 H 0.387 0.613 40 H 0.064 0.936 41 H 0.086 0.914 42 H 0.348 0.652 43 H 0.073 0.927 44 H 0.102 0.898 45 H 0.397 0.603 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.046 12.962 -17.124 33.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.165 4.165 3 C -0.141 4.141 4 N -0.123 5.123 5 H 0.278 0.722 6 C -0.147 4.147 7 C 0.379 3.621 8 O -0.457 6.457 9 N -0.311 5.311 10 C -0.051 4.051 11 C -0.031 4.031 12 C 0.046 3.954 13 H 0.088 0.912 14 O -0.373 6.373 15 C -0.095 4.095 16 N -0.320 5.320 17 C -0.066 4.066 18 C 0.223 3.777 19 O -0.512 6.512 20 N -0.209 5.209 21 C -0.466 4.466 22 H 0.095 0.905 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.818 3.182 26 H -0.200 1.200 27 H -0.194 1.194 28 H -0.196 1.196 29 N -0.168 5.168 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.111 0.889 33 H 0.244 0.756 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.143 0.857 38 H 0.108 0.892 39 H 0.236 0.764 40 H 0.082 0.918 41 H 0.104 0.896 42 H 0.167 0.833 43 H 0.090 0.910 44 H 0.120 0.880 45 H 0.231 0.769 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -25.484 13.650 -16.234 33.156 hybrid contribution 1.258 -0.505 0.040 1.357 sum -24.226 13.145 -16.194 31.968 Atomic orbital electron populations 1.20130 0.84964 1.03833 1.03195 1.21649 0.98565 0.88133 1.08171 1.23505 0.81812 1.02677 1.06109 1.43010 1.10338 1.06905 1.52074 0.72221 1.22350 0.93585 0.83209 1.15582 1.16881 0.85583 0.82658 0.76942 1.90828 1.25325 1.76258 1.53267 1.47443 1.10885 1.04374 1.68394 1.22118 0.80691 1.00177 1.02106 1.22306 0.88408 0.95438 0.96932 1.22122 0.87251 0.95456 0.90546 0.91226 1.86677 1.63632 1.35821 1.51165 1.22627 0.96416 1.00107 0.90313 1.59915 1.07296 1.53873 1.10959 1.21539 0.93946 0.97926 0.93180 1.20952 0.82690 0.82105 0.91994 1.90502 1.63432 1.53649 1.43643 1.41923 1.22470 1.47216 1.09326 1.19709 1.07614 1.32645 0.86599 0.90518 1.26041 0.96328 0.95687 1.03110 1.69678 1.19954 1.35173 1.31193 0.84860 0.77946 0.78342 0.77097 1.19997 1.19355 1.19563 1.70298 0.99113 1.31487 1.15934 0.90427 0.91550 0.88877 0.75572 0.91549 0.89463 0.90412 0.85719 0.89184 0.76399 0.91776 0.89603 0.83251 0.90971 0.87951 0.76878 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.50 10.42 71.24 0.74 0.25 16 2 C -0.03 -0.45 7.07 41.75 0.30 -0.15 16 3 C 0.00 -0.01 11.91 83.52 0.99 0.98 16 4 N -0.52 -8.07 6.15 -188.01 -1.16 -9.23 16 5 H 0.44 5.36 8.96 -92.71 -0.83 4.53 16 6 C 0.11 2.41 7.59 136.28 1.03 3.45 16 7 C 0.59 14.86 7.66 86.66 0.66 15.52 16 8 O -0.58 -17.65 16.73 -4.03 -0.07 -17.72 16 9 N -0.58 -11.69 2.84 -850.70 -2.41 -14.11 16 10 C 0.09 1.44 9.08 127.77 1.16 2.60 16 11 C 0.09 1.56 5.00 86.38 0.43 2.00 16 12 C 0.11 2.40 3.48 30.59 0.11 2.51 16 13 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 14 O -0.57 -12.31 11.59 -148.98 -1.73 -14.04 16 15 C 0.03 0.79 5.39 86.30 0.47 1.25 16 16 N -0.69 -22.94 6.13 -517.92 -3.17 -26.11 16 17 C 0.07 2.34 6.17 85.56 0.53 2.86 16 18 C 0.43 21.54 7.82 87.66 0.69 22.22 16 19 O -0.63 -36.53 15.78 -3.08 -0.05 -36.57 16 20 N -0.57 -30.13 5.29 -306.98 -1.62 -31.76 16 21 C -0.34 -19.61 9.68 84.04 0.81 -18.80 16 22 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 23 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 24 N -0.92 -50.10 13.05 21.66 0.28 -49.81 16 25 Si 0.99 43.73 29.55 68.60 2.03 45.75 16 26 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 27 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 28 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 29 N -0.44 -8.76 7.94 -177.63 -1.41 -10.17 16 30 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.09 0.29 8.14 -2.39 -0.02 0.28 16 33 H 0.23 0.24 8.06 -2.91 -0.02 0.22 16 34 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.09 1.06 7.21 -2.39 -0.02 1.04 16 36 H 0.08 1.51 5.89 -2.38 -0.01 1.49 16 37 H 0.12 1.17 8.07 -2.39 -0.02 1.15 16 38 H 0.09 1.68 7.50 -2.39 -0.02 1.67 16 39 H 0.39 4.77 9.04 -74.06 -0.67 4.10 16 40 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.35 12.45 7.82 -89.70 -0.70 11.75 16 43 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 45 H 0.40 19.67 7.90 -92.70 -0.73 18.94 16 46 H 0.28 14.11 8.31 -92.70 -0.77 13.34 16 Total: -1.00 -83.55 392.32 -2.79 -86.34 By element: Atomic # 1 Polarization: 44.78 SS G_CDS: -1.87 Total: 42.91 kcal Atomic # 6 Polarization: 26.13 SS G_CDS: 8.39 Total: 34.52 kcal Atomic # 7 Polarization: -131.70 SS G_CDS: -9.49 Total: -141.19 kcal Atomic # 8 Polarization: -66.49 SS G_CDS: -1.84 Total: -68.33 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -83.55 -2.79 -86.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725709846.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.668 kcal (2) G-P(sol) polarization free energy of solvation -83.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds