Wall clock time and date at job start Tue Mar 31 2020 23:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35564 * 125.82476 * 2 1 4 4 N 1.35399 * 107.16543 * 180.02562 * 3 2 1 5 5 H 0.96995 * 126.44339 * 179.73885 * 4 3 2 6 6 C 1.36670 * 107.11775 * 359.97438 * 4 3 2 7 7 C 1.47413 * 125.85994 * 179.97438 * 6 4 3 8 8 O 1.21596 * 120.00195 * 353.47344 * 7 6 4 9 9 N 1.34774 * 119.99437 * 173.47424 * 7 6 4 10 10 C 1.46501 * 120.00429 * 3.40198 * 9 7 6 11 11 C 1.46503 * 119.99687 * 183.40227 * 9 7 6 12 12 C 1.52996 * 109.47278 * 90.00236 * 11 9 7 13 13 H 1.08997 * 109.47492 * 59.99953 * 12 11 9 14 14 O 1.42906 * 109.46869 * 299.99690 * 12 11 9 15 15 C 1.53004 * 109.47121 * 180.02562 * 12 11 9 16 16 N 1.46908 * 109.46647 * 184.99762 * 15 12 11 17 17 C 1.46903 * 110.99477 * 180.02562 * 16 15 12 18 18 C 1.50699 * 109.46850 * 180.02562 * 17 16 15 19 19 O 1.21291 * 120.00083 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00019 * 179.97438 * 18 17 16 21 21 C 1.37093 * 120.00382 * 179.97438 * 20 18 17 22 22 H 1.08001 * 119.99979 * 359.97438 * 21 20 18 23 23 C 1.38947 * 120.00365 * 179.97438 * 21 20 18 24 24 N 1.31410 * 119.99827 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00242 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46648 * 60.00021 * 25 23 21 27 27 H 1.48497 * 109.47003 * 180.02562 * 25 23 21 28 28 H 1.48496 * 109.46912 * 300.00516 * 25 23 21 29 29 N 1.31609 * 108.27098 * 0.02562 * 6 4 3 30 30 H 1.09000 * 109.47375 * 89.99967 * 1 2 3 31 31 H 1.09006 * 109.46172 * 209.99935 * 1 2 3 32 32 H 1.08995 * 109.46841 * 329.99046 * 1 2 3 33 33 H 1.08003 * 126.41918 * 0.05517 * 3 2 1 34 34 H 1.09005 * 109.47012 * 84.10506 * 10 9 7 35 35 H 1.08998 * 109.47311 * 204.10518 * 10 9 7 36 36 H 1.08994 * 109.47063 * 324.10656 * 10 9 7 37 37 H 1.09003 * 109.47287 * 210.00133 * 11 9 7 38 38 H 1.09004 * 109.47293 * 329.99823 * 11 9 7 39 39 H 0.96693 * 114.00415 * 299.99877 * 14 12 11 40 40 H 1.08988 * 109.46935 * 304.99378 * 15 12 11 41 41 H 1.08995 * 109.47196 * 65.00020 * 15 12 11 42 42 H 1.00896 * 111.00099 * 303.95172 * 16 15 12 43 43 H 1.09007 * 109.46659 * 299.99837 * 17 16 15 44 44 H 1.08994 * 109.47500 * 59.99898 * 17 16 15 45 45 H 0.97006 * 119.99695 * 359.97438 * 20 18 17 46 46 H 0.97002 * 120.00103 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3005 1.0992 0.0000 4 7 3.5833 0.6660 -0.0006 5 1 4.3788 1.2209 -0.0043 6 6 3.5465 -0.7002 -0.0003 7 6 4.7176 -1.5956 -0.0013 8 8 5.8359 -1.1338 -0.1221 9 7 4.5485 -2.9261 0.1317 10 6 3.1981 -3.4896 0.2023 11 6 5.7154 -3.8089 0.2057 12 6 6.1376 -3.9748 1.6668 13 1 5.3159 -4.4103 2.2353 14 8 6.4712 -2.6975 2.2142 15 6 7.3566 -4.8963 1.7440 16 7 7.6890 -5.1516 3.1520 17 6 8.8577 -6.0344 3.2652 18 6 9.1674 -6.2736 4.7205 19 8 8.4823 -5.7589 5.5789 20 7 10.2057 -7.0594 5.0682 21 6 10.4878 -7.2767 6.3920 22 1 9.8783 -6.8177 7.1564 23 6 11.5579 -8.0873 6.7505 24 7 12.2998 -8.6453 5.8204 25 14 11.9428 -8.3827 8.5544 26 1 10.7737 -9.0202 9.2119 27 1 13.1236 -9.2757 8.6688 28 1 12.2370 -7.0864 9.2164 29 7 2.2861 -1.0791 -0.0002 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3632 -0.8901 0.5139 32 1 -0.3633 0.8899 0.5140 33 1 1.9711 2.1277 0.0008 34 1 2.8109 -3.6327 -0.8065 35 1 3.2313 -4.4491 0.7183 36 1 2.5473 -2.8061 0.7477 37 1 5.4610 -4.7831 -0.2119 38 1 6.5371 -3.3734 -0.3628 39 1 7.1965 -2.2508 1.7566 40 1 7.1309 -5.8397 1.2471 41 1 8.2040 -4.4197 1.2513 42 1 7.8394 -4.2874 3.6505 43 1 8.6427 -6.9859 2.7786 44 1 9.7154 -5.5654 2.7831 45 1 10.7534 -7.4714 4.3816 46 1 13.0467 -9.2115 6.0706 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725709850.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:19 Heat of formation + Delta-G solvation = -80.091256 kcal Electronic energy + Delta-G solvation = -28610.760489 eV Core-core repulsion = 24342.670437 eV Total energy + Delta-G solvation = -4268.090052 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.31019 -40.82333 -40.16257 -38.73432 -36.64255 -36.15589 -35.55162 -34.19323 -33.28029 -32.57451 -31.33831 -29.02903 -28.12622 -27.53438 -26.54804 -25.09494 -23.57702 -22.57949 -21.35470 -21.12291 -20.96625 -19.92232 -19.03144 -18.26360 -17.64581 -17.51355 -17.18694 -17.03627 -16.69499 -16.42420 -16.19523 -15.92684 -15.70664 -15.14938 -15.05548 -14.95701 -14.63335 -14.35150 -14.09402 -14.03237 -13.82476 -13.53697 -13.48907 -13.38311 -13.21971 -13.03909 -12.94923 -12.78214 -12.59674 -12.44281 -12.12743 -12.08213 -11.51652 -11.45715 -11.31043 -11.17509 -10.81406 -10.36375 -10.02774 -9.72756 -9.35467 -9.33218 -8.47358 -5.96394 0.31575 1.39378 1.41088 1.45769 1.52340 1.58710 2.04145 2.27354 2.30072 2.39367 2.89332 3.12479 3.19599 3.44605 3.54209 3.84348 3.92089 4.07097 4.12361 4.14267 4.31361 4.37886 4.38366 4.44303 4.49511 4.55120 4.63179 4.73055 4.79895 4.87003 4.98134 4.99622 5.06992 5.11398 5.21679 5.39711 5.43467 5.73859 5.87177 6.09219 6.16516 6.18412 6.34768 6.59457 6.71099 6.75083 7.01480 7.11618 7.54898 8.10909 8.69702 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028804 B = 0.001649 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.859320 B =16979.364174 C =17182.284346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.032 4.032 3 C -0.003 4.003 4 N -0.520 5.520 5 H 0.437 0.563 6 C 0.115 3.885 7 C 0.602 3.398 8 O -0.570 6.570 9 N -0.584 5.584 10 C 0.072 3.928 11 C 0.090 3.910 12 C 0.099 3.901 13 H 0.096 0.904 14 O -0.571 6.571 15 C 0.034 3.966 16 N -0.682 5.682 17 C 0.065 3.935 18 C 0.435 3.565 19 O -0.626 6.626 20 N -0.572 5.572 21 C -0.338 4.338 22 H 0.077 0.923 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.994 3.006 26 H -0.272 1.272 27 H -0.268 1.268 28 H -0.273 1.273 29 N -0.448 5.448 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.227 0.773 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.123 0.877 38 H 0.089 0.911 39 H 0.378 0.622 40 H 0.103 0.897 41 H 0.046 0.954 42 H 0.344 0.656 43 H 0.109 0.891 44 H 0.066 0.934 45 H 0.397 0.603 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.457 16.452 -20.158 33.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.166 4.166 3 C -0.143 4.143 4 N -0.122 5.122 5 H 0.278 0.722 6 C -0.144 4.144 7 C 0.390 3.610 8 O -0.449 6.449 9 N -0.314 5.314 10 C -0.070 4.070 11 C -0.033 4.033 12 C 0.039 3.961 13 H 0.114 0.886 14 O -0.378 6.378 15 C -0.095 4.095 16 N -0.314 5.314 17 C -0.067 4.067 18 C 0.222 3.778 19 O -0.512 6.512 20 N -0.209 5.209 21 C -0.467 4.467 22 H 0.095 0.905 23 C -0.211 4.211 24 N -0.559 5.559 25 Si 0.817 3.183 26 H -0.197 1.197 27 H -0.193 1.193 28 H -0.198 1.198 29 N -0.173 5.173 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.111 0.889 33 H 0.243 0.757 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.113 0.887 37 H 0.141 0.859 38 H 0.107 0.893 39 H 0.227 0.773 40 H 0.121 0.879 41 H 0.064 0.936 42 H 0.162 0.838 43 H 0.127 0.873 44 H 0.084 0.916 45 H 0.231 0.769 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.312 15.349 -19.184 32.524 hybrid contribution 2.492 1.249 0.046 2.788 sum -18.819 16.597 -19.138 31.558 Atomic orbital electron populations 1.20131 0.85087 1.03773 1.03191 1.21650 0.98543 0.88234 1.08153 1.23472 0.81898 1.02603 1.06329 1.42971 1.10259 1.06865 1.52076 0.72183 1.22463 0.93657 0.83288 1.14992 1.16683 0.85521 0.82324 0.76518 1.90756 1.25153 1.76119 1.52915 1.47389 1.09084 1.04885 1.70013 1.22363 0.81179 1.00297 1.03189 1.22317 0.88692 0.95844 0.96494 1.22361 0.96745 0.83058 0.93976 0.88618 1.86593 1.57789 1.32864 1.60520 1.22665 0.97218 1.01088 0.88557 1.60032 1.38233 1.20335 1.12817 1.21556 0.93255 0.99853 0.92027 1.20941 0.82200 0.82528 0.92093 1.90499 1.52536 1.54734 1.53464 1.41913 1.27460 1.43636 1.07883 1.19638 1.13489 1.29241 0.84357 0.90480 1.26038 0.95262 0.95648 1.04195 1.69662 1.19081 1.32386 1.34816 0.84984 0.77973 0.78352 0.76977 1.19739 1.19277 1.19813 1.70233 0.99333 1.31268 1.16458 0.90382 0.91644 0.88931 0.75651 0.91594 0.90006 0.88686 0.85882 0.89305 0.77327 0.87920 0.93567 0.83775 0.87269 0.91642 0.76885 0.91236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.53 10.42 71.24 0.74 0.21 16 2 C -0.03 -0.47 7.07 41.75 0.30 -0.17 16 3 C 0.00 -0.04 11.91 83.52 0.99 0.96 16 4 N -0.52 -7.82 6.15 -188.02 -1.16 -8.98 16 5 H 0.44 5.04 8.96 -92.71 -0.83 4.20 16 6 C 0.12 2.45 7.67 136.28 1.04 3.49 16 7 C 0.60 14.35 7.13 86.66 0.62 14.96 16 8 O -0.57 -15.58 15.68 -0.19 0.00 -15.58 16 9 N -0.58 -11.61 2.83 -850.69 -2.41 -14.01 16 10 C 0.07 1.18 9.60 127.77 1.23 2.40 16 11 C 0.09 1.51 5.14 86.38 0.44 1.96 16 12 C 0.10 2.16 3.48 30.59 0.11 2.27 16 13 H 0.10 2.37 8.14 -2.39 -0.02 2.36 16 14 O -0.57 -15.52 11.74 -145.15 -1.70 -17.22 16 15 C 0.03 0.76 5.36 86.30 0.46 1.22 16 16 N -0.68 -22.42 6.13 -517.92 -3.17 -25.59 16 17 C 0.07 2.28 6.17 85.56 0.53 2.81 16 18 C 0.43 21.40 7.82 87.66 0.69 22.09 16 19 O -0.63 -36.29 15.78 -3.06 -0.05 -36.34 16 20 N -0.57 -30.00 5.29 -306.99 -1.62 -31.62 16 21 C -0.34 -19.63 9.68 84.04 0.81 -18.82 16 22 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 23 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 24 N -0.92 -49.98 13.05 21.66 0.28 -49.70 16 25 Si 0.99 43.58 29.55 68.60 2.03 45.61 16 26 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 27 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 28 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 29 N -0.45 -8.94 7.69 -177.63 -1.37 -10.31 16 30 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.23 0.27 8.06 -2.91 -0.02 0.25 16 34 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.08 1.08 8.03 -2.39 -0.02 1.06 16 36 H 0.10 1.86 5.34 -2.39 -0.01 1.85 16 37 H 0.12 1.35 8.07 -2.39 -0.02 1.33 16 38 H 0.09 1.56 7.38 -2.39 -0.02 1.55 16 39 H 0.38 9.05 8.56 -74.06 -0.63 8.41 16 40 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.34 12.75 7.99 -89.70 -0.72 12.03 16 43 H 0.11 3.32 8.14 -2.38 -0.02 3.30 16 44 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.40 19.61 7.90 -92.70 -0.73 18.88 16 46 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -80.03 391.15 -2.59 -82.62 By element: Atomic # 1 Polarization: 49.74 SS G_CDS: -1.85 Total: 47.89 kcal Atomic # 6 Polarization: 24.81 SS G_CDS: 8.43 Total: 33.23 kcal Atomic # 7 Polarization: -130.76 SS G_CDS: -9.44 Total: -140.21 kcal Atomic # 8 Polarization: -67.39 SS G_CDS: -1.76 Total: -69.14 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -80.03 -2.59 -82.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725709850.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.528 kcal (2) G-P(sol) polarization free energy of solvation -80.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds